RNA–Protein interactions for RNA: ENST00000508736.1

PRPF40B-203, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 1,861 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-203ENST00000508736 NISCHQ9Y2I1 1504 aa25.46■■□□□ 1.67
PRPF40B-203ENST00000508736 CCDC180Q9P1Z9 1646 aa22.11■■□□□ 1.13
PRPF40B-203ENST00000508736 ZCCHC6Q5VYS8 1495 aaKnown RBP21.45■■□□□ 1.03
PRPF40B-203ENST00000508736 ABCC9O60706 1549 aa21.42■■□□□ 1.02
PRPF40B-203ENST00000508736 DCAF1Q9Y4B6 1507 aa21.12■□□□□ 0.97
PRPF40B-203ENST00000508736 DCAF8L2P0C7V8 631 aa21.07■□□□□ 0.96
PRPF40B-203ENST00000508736 SHROOM4Q9ULL8 1493 aa20.81■□□□□ 0.92
PRPF40B-203ENST00000508736 MYO15BQ96JP2 1530 aa20.8■□□□□ 0.92
PRPF40B-203ENST00000508736 NACADO15069 1562 aa20.74■□□□□ 0.91
PRPF40B-203ENST00000508736 RB1CC1Q8TDY2 1594 aa20.69■□□□□ 0.9
PRPF40B-203ENST00000508736 SCRIBQ14160 1630 aa20.31■□□□□ 0.84
PRPF40B-203ENST00000508736 UNC13AQ9UPW8 1703 aa20.2■□□□□ 0.82
PRPF40B-203ENST00000508736 SUPT5HO00267 1087 aaKnown RBP20.17■□□□□ 0.82
PRPF40B-203ENST00000508736 PABPN1Q86U42 306 aaKnown RBP eCLIP20.16■□□□□ 0.82
PRPF40B-203ENST00000508736 BICRAQ9NZM4 1560 aa20.05■□□□□ 0.8
PRPF40B-203ENST00000508736 RSF1Q96T23 1441 aaPredicted RBP19.83■□□□□ 0.77
PRPF40B-203ENST00000508736 CECR2Q9BXF3 1484 aa19.71■□□□□ 0.75
PRPF40B-203ENST00000508736 BAZ1AQ9NRL2 1556 aaPredicted RBP19.65■□□□□ 0.74
PRPF40B-203ENST00000508736 MROH2BQ7Z745 1585 aa19.65■□□□□ 0.74
PRPF40B-203ENST00000508736 SMARCA4P51532 1647 aa19.51■□□□□ 0.71
PRPF40B-203ENST00000508736 CHIC1Q5VXU3 224 aa19.5■□□□□ 0.71
PRPF40B-203ENST00000508736 EIF4G1Q04637 1599 aaKnown RBP19.5■□□□□ 0.71
PRPF40B-203ENST00000508736 WIZO95785 1651 aa19.48■□□□□ 0.71
PRPF40B-203ENST00000508736 DNAJC5BQ9UF47 199 aa19.37■□□□□ 0.69
PRPF40B-203ENST00000508736 TOP2AP11388 1531 aaKnown RBP19.34■□□□□ 0.69
PRPF40B-203ENST00000508736 CC2D2AQ9P2K1 1620 aa19.34■□□□□ 0.69
PRPF40B-203ENST00000508736 PEG3Q9GZU2 1588 aa19.32■□□□□ 0.68
PRPF40B-203ENST00000508736 ATAD2BQ9ULI0 1458 aa19.25■□□□□ 0.67
PRPF40B-203ENST00000508736 SMARCA2P51531 1590 aa19.21■□□□□ 0.67
PRPF40B-203ENST00000508736 NCAPD3P42695 1498 aa19.16■□□□□ 0.66
PRPF40B-203ENST00000508736 CCDC88BA6NC98 1476 aa19.12■□□□□ 0.65
PRPF40B-203ENST00000508736 BAZ1BQ9UIG0 1483 aaKnown RBP19.12■□□□□ 0.65
PRPF40B-203ENST00000508736 HMGXB3Q12766 1538 aa19.06■□□□□ 0.64
PRPF40B-203ENST00000508736 TRIM41Q8WV44 630 aa19■□□□□ 0.63
PRPF40B-203ENST00000508736 ABCC8Q09428 1581 aa18.76■□□□□ 0.59
PRPF40B-203ENST00000508736 LOC105371045A0A1W2PR82 267 aa18.7■□□□□ 0.58
PRPF40B-203ENST00000508736 WRNQ14191 1432 aaPredicted RBP eCLIP18.67■□□□□ 0.58
PRPF40B-203ENST00000508736 CADPSQ9ULU8 1353 aa18.66■□□□□ 0.58
PRPF40B-203ENST00000508736 NESP48681 1621 aa18.65■□□□□ 0.58
PRPF40B-203ENST00000508736 CFTRP13569 1480 aa18.6■□□□□ 0.57
PRPF40B-203ENST00000508736 EEA1Q15075 1411 aa18.58■□□□□ 0.57
PRPF40B-203ENST00000508736 FAM9AQ8IZU1 332 aaPredicted RBP18.57■□□□□ 0.56
PRPF40B-203ENST00000508736 LAMC3Q9Y6N6 1575 aa18.57■□□□□ 0.56
PRPF40B-203ENST00000508736 SYNJ1O43426 1573 aa18.55■□□□□ 0.56
PRPF40B-203ENST00000508736 PCGF6Q9BYE7 350 aa18.51■□□□□ 0.55
PRPF40B-203ENST00000508736 TOP2BQ02880 1626 aa18.5■□□□□ 0.55
PRPF40B-203ENST00000508736 PRDM2Q13029 1718 aa18.5■□□□□ 0.55
PRPF40B-203ENST00000508736 PDS5BQ9NTI5 1447 aa18.49■□□□□ 0.55
PRPF40B-203ENST00000508736 HRCP23327 699 aa18.49■□□□□ 0.55
PRPF40B-203ENST00000508736 BIVM-ERCC5R4GMW8 1640 aa18.48■□□□□ 0.55
PRPF40B-203ENST00000508736 SOGA1O94964 1423 aa18.47■□□□□ 0.55
PRPF40B-203ENST00000508736 FANCD2Q9BXW9 1451 aa18.45■□□□□ 0.54
PRPF40B-203ENST00000508736 ERCC6Q03468 1493 aa18.42■□□□□ 0.54
PRPF40B-203ENST00000508736 CSRNP3Q8WYN3 585 aa18.39■□□□□ 0.54
PRPF40B-203ENST00000508736 RUSC2Q8N2Y8 1516 aa18.38■□□□□ 0.53
PRPF40B-203ENST00000508736 CEP164Q9UPV0 1460 aa18.37■□□□□ 0.53
PRPF40B-203ENST00000508736 KIF21AQ7Z4S6 1674 aa18.36■□□□□ 0.53
PRPF40B-203ENST00000508736 CUX1P39880 1505 aa18.36■□□□□ 0.53
PRPF40B-203ENST00000508736 TRIM26Q12899 539 aaPredicted RBP18.35■□□□□ 0.53
PRPF40B-203ENST00000508736 KIF21BO75037 1637 aa18.3■□□□□ 0.52
PRPF40B-203ENST00000508736 GOLGA3Q08378 1498 aa18.29■□□□□ 0.52
PRPF40B-203ENST00000508736 TNIKQ9UKE5 1360 aa18.29■□□□□ 0.52
PRPF40B-203ENST00000508736 MRC2Q9UBG0 1479 aa18.25■□□□□ 0.51
PRPF40B-203ENST00000508736 EHMT2Q96KQ7 1210 aa18.23■□□□□ 0.51
PRPF40B-203ENST00000508736 URB2Q14146 1524 aaKnown RBP18.23■□□□□ 0.51
PRPF40B-203ENST00000508736 THOC2Q8NI27 1593 aaKnown RBP18.18■□□□□ 0.5
PRPF40B-203ENST00000508736 TOPBP1Q92547 1522 aa18.18■□□□□ 0.5
PRPF40B-203ENST00000508736 CEP162Q5TB80 1403 aa18.18■□□□□ 0.5
PRPF40B-203ENST00000508736 KIF27Q86VH2 1401 aa18.18■□□□□ 0.5
PRPF40B-203ENST00000508736 DNMBPQ6XZF7 1577 aa18.16■□□□□ 0.5
PRPF40B-203ENST00000508736 ERICH3Q5RHP9 1530 aa18.15■□□□□ 0.5
PRPF40B-203ENST00000508736 WDR62O43379 1518 aa18.14■□□□□ 0.49
PRPF40B-203ENST00000508736 PRXQ9BXM0 1461 aa18.14■□□□□ 0.49
PRPF40B-203ENST00000508736 UBTFP17480 764 aaKnown RBP18.13■□□□□ 0.49
PRPF40B-203ENST00000508736 FGD5Q6ZNL6 1462 aa18.12■□□□□ 0.49
PRPF40B-203ENST00000508736 RAPGEF2Q9Y4G8 1499 aa18.1■□□□□ 0.49
PRPF40B-203ENST00000508736 POLA1P09884 1462 aaPredicted RBP18.05■□□□□ 0.48
PRPF40B-203ENST00000508736 CUX2O14529 1486 aa18.04■□□□□ 0.48
PRPF40B-203ENST00000508736 RAD54L2Q9Y4B4 1467 aa18.02■□□□□ 0.47
PRPF40B-203ENST00000508736 ABCA10Q8WWZ4 1543 aa18.01■□□□□ 0.47
PRPF40B-203ENST00000508736 ZEB1P37275 1124 aaPredicted RBP17.99■□□□□ 0.47
PRPF40B-203ENST00000508736 CLIP1P30622 1438 aa17.98■□□□□ 0.47
PRPF40B-203ENST00000508736 IGF1RP08069 1367 aa17.98■□□□□ 0.47
PRPF40B-203ENST00000508736 IFT140Q96RY7 1462 aa17.96■□□□□ 0.47
PRPF40B-203ENST00000508736 PPARGC1BQ86YN6 1023 aaKnown RBP17.92■□□□□ 0.46
PRPF40B-203ENST00000508736 TARBP1Q13395 1621 aaKnown RBP17.92■□□□□ 0.46
PRPF40B-203ENST00000508736 TDRD9Q8NDG6 1382 aaKnown RBP17.91■□□□□ 0.46
PRPF40B-203ENST00000508736 WDR97A6NE52 1622 aa17.91■□□□□ 0.46
PRPF40B-203ENST00000508736 ZNF608Q9ULD9 1512 aaPredicted RBP17.89■□□□□ 0.45
PRPF40B-203ENST00000508736 CARMIL1Q5VZK9 1371 aa17.88■□□□□ 0.45
PRPF40B-203ENST00000508736 VPS8Q8N3P4 1428 aa17.88■□□□□ 0.45
PRPF40B-203ENST00000508736 AQRO60306 1485 aaKnown RBP eCLIP17.86■□□□□ 0.45
PRPF40B-203ENST00000508736 CUL7Q14999 1698 aa17.84■□□□□ 0.45
PRPF40B-203ENST00000508736 ABCA5Q8WWZ7 1642 aa17.83■□□□□ 0.44
PRPF40B-203ENST00000508736 GAPVD1Q14C86 1478 aa17.8■□□□□ 0.44
PRPF40B-203ENST00000508736 ARAP1Q96P48 1450 aa17.78■□□□□ 0.44
PRPF40B-203ENST00000508736 EIF4G3O43432 1585 aaKnown RBP17.77■□□□□ 0.44
PRPF40B-203ENST00000508736 GRIN2BQ13224 1484 aa17.73■□□□□ 0.43
PRPF40B-203ENST00000508736 ARHGAP35Q9NRY4 1499 aa17.73■□□□□ 0.43
PRPF40B-203ENST00000508736 PBRM1Q86U86 1689 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms