RNA–Protein interactions for RNA: ENST00000508503.5

CLDND1-218, Transcript of claudin domain containing 1, humanhuman

TSL 2

Gene CLDND1, Length 707 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-218ENST00000508503 NISCHQ9Y2I1 1504 aa30.04■■■□□ 2.4
CLDND1-218ENST00000508503 CCDC180Q9P1Z9 1646 aa26.79■■□□□ 1.88
CLDND1-218ENST00000508503 ABCC9O60706 1549 aa26.45■■□□□ 1.83
CLDND1-218ENST00000508503 RB1CC1Q8TDY2 1594 aa25.35■■□□□ 1.65
CLDND1-218ENST00000508503 NACADO15069 1562 aa25.29■■□□□ 1.64
CLDND1-218ENST00000508503 DCAF8L2P0C7V8 631 aa25.14■■□□□ 1.62
CLDND1-218ENST00000508503 MYO15BQ96JP2 1530 aa25.11■■□□□ 1.61
CLDND1-218ENST00000508503 ZCCHC6Q5VYS8 1495 aaKnown RBP24.94■■□□□ 1.58
CLDND1-218ENST00000508503 DCAF1Q9Y4B6 1507 aa24.88■■□□□ 1.57
CLDND1-218ENST00000508503 UNC13AQ9UPW8 1703 aa24.77■■□□□ 1.56
CLDND1-218ENST00000508503 PABPN1Q86U42 306 aaKnown RBP eCLIP24.7■■□□□ 1.54
CLDND1-218ENST00000508503 DNAJC5BQ9UF47 199 aa24.66■■□□□ 1.54
CLDND1-218ENST00000508503 BICRAQ9NZM4 1560 aa24.64■■□□□ 1.54
CLDND1-218ENST00000508503 SHROOM4Q9ULL8 1493 aa24.35■■□□□ 1.49
CLDND1-218ENST00000508503 SCRIBQ14160 1630 aa24.35■■□□□ 1.49
CLDND1-218ENST00000508503 EIF4G1Q04637 1599 aaKnown RBP23.97■■□□□ 1.43
CLDND1-218ENST00000508503 CC2D2AQ9P2K1 1620 aa23.93■■□□□ 1.42
CLDND1-218ENST00000508503 CECR2Q9BXF3 1484 aa23.82■■□□□ 1.4
CLDND1-218ENST00000508503 NCAPD3P42695 1498 aa23.39■■□□□ 1.34
CLDND1-218ENST00000508503 SMARCA4P51532 1647 aa23.33■■□□□ 1.32
CLDND1-218ENST00000508503 ATAD2BQ9ULI0 1458 aa23.32■■□□□ 1.32
CLDND1-218ENST00000508503 BAZ1AQ9NRL2 1556 aaPredicted RBP23.27■■□□□ 1.32
CLDND1-218ENST00000508503 SMARCA2P51531 1590 aa23.24■■□□□ 1.31
CLDND1-218ENST00000508503 HMGXB3Q12766 1538 aa23.18■■□□□ 1.3
CLDND1-218ENST00000508503 PEG3Q9GZU2 1588 aa23.17■■□□□ 1.3
CLDND1-218ENST00000508503 MROH2BQ7Z745 1585 aa23.13■■□□□ 1.29
CLDND1-218ENST00000508503 BAZ1BQ9UIG0 1483 aaKnown RBP23.05■■□□□ 1.28
CLDND1-218ENST00000508503 WIZO95785 1651 aa22.83■■□□□ 1.24
CLDND1-218ENST00000508503 NESP48681 1621 aa22.82■■□□□ 1.24
CLDND1-218ENST00000508503 RSF1Q96T23 1441 aaPredicted RBP22.79■■□□□ 1.24
CLDND1-218ENST00000508503 ERCC6Q03468 1493 aa22.79■■□□□ 1.24
CLDND1-218ENST00000508503 LAMC3Q9Y6N6 1575 aa22.75■■□□□ 1.23
CLDND1-218ENST00000508503 CUX2O14529 1486 aa22.73■■□□□ 1.23
CLDND1-218ENST00000508503 CADPSQ9ULU8 1353 aa22.66■■□□□ 1.22
CLDND1-218ENST00000508503 PDS5BQ9NTI5 1447 aa22.62■■□□□ 1.21
CLDND1-218ENST00000508503 TOP2AP11388 1531 aaKnown RBP22.57■■□□□ 1.2
CLDND1-218ENST00000508503 THOC2Q8NI27 1593 aaKnown RBP22.53■■□□□ 1.2
CLDND1-218ENST00000508503 KIF21AQ7Z4S6 1674 aa22.52■■□□□ 1.2
CLDND1-218ENST00000508503 CFTRP13569 1480 aa22.47■■□□□ 1.19
CLDND1-218ENST00000508503 DNAJC5Q9H3Z4 198 aa22.43■■□□□ 1.18
CLDND1-218ENST00000508503 CCDC88BA6NC98 1476 aa22.36■■□□□ 1.17
CLDND1-218ENST00000508503 MRC2Q9UBG0 1479 aa22.36■■□□□ 1.17
CLDND1-218ENST00000508503 FANCD2Q9BXW9 1451 aa22.35■■□□□ 1.17
CLDND1-218ENST00000508503 CEP164Q9UPV0 1460 aa22.33■■□□□ 1.16
CLDND1-218ENST00000508503 WDR62O43379 1518 aa22.31■■□□□ 1.16
CLDND1-218ENST00000508503 PRDM2Q13029 1718 aa22.19■■□□□ 1.14
CLDND1-218ENST00000508503 URB2Q14146 1524 aaKnown RBP22.16■■□□□ 1.14
CLDND1-218ENST00000508503 ABCC8Q09428 1581 aa21.99■■□□□ 1.11
CLDND1-218ENST00000508503 TOPBP1Q92547 1522 aa21.97■■□□□ 1.11
CLDND1-218ENST00000508503 SUPT5HO00267 1087 aaKnown RBP21.93■■□□□ 1.1
CLDND1-218ENST00000508503 DNMBPQ6XZF7 1577 aa21.91■■□□□ 1.1
CLDND1-218ENST00000508503 IFT140Q96RY7 1462 aa21.9■■□□□ 1.1
CLDND1-218ENST00000508503 ZNF608Q9ULD9 1512 aaPredicted RBP21.82■■□□□ 1.08
CLDND1-218ENST00000508503 TARBP1Q13395 1621 aaKnown RBP21.77■■□□□ 1.08
CLDND1-218ENST00000508503 OSCARQ8IYS5 282 aa21.77■■□□□ 1.08
CLDND1-218ENST00000508503 POLA1P09884 1462 aaPredicted RBP21.77■■□□□ 1.07
CLDND1-218ENST00000508503 SOGA1O94964 1423 aa21.7■■□□□ 1.06
CLDND1-218ENST00000508503 CUX1P39880 1505 aa21.7■■□□□ 1.06
CLDND1-218ENST00000508503 AQRO60306 1485 aaKnown RBP eCLIP21.68■■□□□ 1.061e-6■■■■□ 26.1
CLDND1-218ENST00000508503 EIF4G3O43432 1585 aaKnown RBP21.67■■□□□ 1.06
CLDND1-218ENST00000508503 RAD54L2Q9Y4B4 1467 aa21.67■■□□□ 1.06
CLDND1-218ENST00000508503 FGD5Q6ZNL6 1462 aa21.64■■□□□ 1.06
CLDND1-218ENST00000508503 TDRD9Q8NDG6 1382 aaKnown RBP21.6■■□□□ 1.05
CLDND1-218ENST00000508503 WDR97A6NE52 1622 aa21.58■■□□□ 1.04
CLDND1-218ENST00000508503 ABCA10Q8WWZ4 1543 aa21.47■■□□□ 1.03
CLDND1-218ENST00000508503 WRNQ14191 1432 aaPredicted RBP eCLIP21.46■■□□□ 1.03
CLDND1-218ENST00000508503 GRIN2BQ13224 1484 aa21.45■■□□□ 1.03
CLDND1-218ENST00000508503 CHD1O14646 1710 aa21.45■■□□□ 1.02
CLDND1-218ENST00000508503 TOP2BQ02880 1626 aa21.44■■□□□ 1.02
CLDND1-218ENST00000508503 BIVM-ERCC5R4GMW8 1640 aa21.44■■□□□ 1.02
CLDND1-218ENST00000508503 TRIM41Q8WV44 630 aa21.43■■□□□ 1.02
CLDND1-218ENST00000508503 MAGI1Q96QZ7 1491 aaPredicted RBP21.43■■□□□ 1.02
CLDND1-218ENST00000508503 FBLN2P98095 1184 aa21.42■■□□□ 1.02
CLDND1-218ENST00000508503 GAPVD1Q14C86 1478 aa21.42■■□□□ 1.02
CLDND1-218ENST00000508503 SNAPC4Q5SXM2 1469 aa21.42■■□□□ 1.02
CLDND1-218ENST00000508503 SYNJ1O43426 1573 aa21.4■■□□□ 1.02
CLDND1-218ENST00000508503 RIMBP3CA6NJZ7 1639 aa21.37■■□□□ 1.01
CLDND1-218ENST00000508503 RIMBP3BA6NNM3 1639 aa21.37■■□□□ 1.01
CLDND1-218ENST00000508503 ABCA5Q8WWZ7 1642 aa21.37■■□□□ 1.01
CLDND1-218ENST00000508503 RIMBP3Q9UFD9 1639 aa21.37■■□□□ 1.01
CLDND1-218ENST00000508503 CHMP7Q8WUX9 453 aaPredicted RBP21.37■■□□□ 1.01
CLDND1-218ENST00000508503 ARHGEF11O15085 1522 aa21.35■■□□□ 1.01
CLDND1-218ENST00000508503 SYNJ2O15056 1496 aa21.34■■□□□ 1.01
CLDND1-218ENST00000508503 PBRM1Q86U86 1689 aa21.32■■□□□ 1
CLDND1-218ENST00000508503 CLASP1Q7Z460 1538 aa21.28■■□□□ 1
CLDND1-218ENST00000508503 ERICH3Q5RHP9 1530 aa21.2■□□□□ 0.98
CLDND1-218ENST00000508503 CYB5RLQ6IPT4 315 aa21.2■□□□□ 0.98
CLDND1-218ENST00000508503 FHAD1B1AJZ9 1412 aa21.18■□□□□ 0.98
CLDND1-218ENST00000508503 GRIN2AQ12879 1464 aa21.17■□□□□ 0.98
CLDND1-218ENST00000508503 ARAP1Q96P48 1450 aa21.17■□□□□ 0.98
CLDND1-218ENST00000508503 ADAMTS12P58397 1594 aa21.16■□□□□ 0.98
CLDND1-218ENST00000508503 NUP160Q12769 1436 aa21.12■□□□□ 0.97
CLDND1-218ENST00000508503 CEP170Q5SW79 1584 aa21.06■□□□□ 0.96
CLDND1-218ENST00000508503 IGF1RP08069 1367 aa21.06■□□□□ 0.96
CLDND1-218ENST00000508503 KIF27Q86VH2 1401 aa21.03■□□□□ 0.96
CLDND1-218ENST00000508503 SHROOM2Q13796 1616 aa20.97■□□□□ 0.95
CLDND1-218ENST00000508503 ERCC6L2Q5T890 1561 aa20.94■□□□□ 0.94
CLDND1-218ENST00000508503 JPH4Q96JJ6 628 aa20.94■□□□□ 0.94
CLDND1-218ENST00000508503 CUL7Q14999 1698 aa20.91■□□□□ 0.94
CLDND1-218ENST00000508503 CARMIL1Q5VZK9 1371 aa20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 138 ms