RNA–Protein interactions for RNA: ENST00000508500.1

LMNA-222, Transcript of lamin A/C, humanhuman

TSL 1 (best)

Gene LMNA, Length 848 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-222ENST00000508500 NISCHQ9Y2I1 1504 aa40.52■■■■■ 4.08
LMNA-222ENST00000508500 CCDC180Q9P1Z9 1646 aa36.32■■■■□ 3.4
LMNA-222ENST00000508500 ABCC9O60706 1549 aa36.24■■■■□ 3.39
LMNA-222ENST00000508500 RB1CC1Q8TDY2 1594 aa34.52■■■■□ 3.12
LMNA-222ENST00000508500 NACADO15069 1562 aa34.29■■■■□ 3.08
LMNA-222ENST00000508500 DNAJC5BQ9UF47 199 aa34.19■■■■□ 3.06
LMNA-222ENST00000508500 DCAF8L2P0C7V8 631 aa33.99■■■■□ 3.03
LMNA-222ENST00000508500 UNC13AQ9UPW8 1703 aa33.93■■■■□ 3.02
LMNA-222ENST00000508500 MYO15BQ96JP2 1530 aa33.86■■■■□ 3.01
LMNA-222ENST00000508500 BICRAQ9NZM4 1560 aa33.65■■■□□ 2.98
LMNA-222ENST00000508500 PABPN1Q86U42 306 aaKnown RBP eCLIP33.65■■■□□ 2.98
LMNA-222ENST00000508500 ZCCHC6Q5VYS8 1495 aaKnown RBP33.63■■■□□ 2.97
LMNA-222ENST00000508500 DCAF1Q9Y4B6 1507 aa33.47■■■□□ 2.95
LMNA-222ENST00000508500 SHROOM4Q9ULL8 1493 aa33.13■■■□□ 2.89
LMNA-222ENST00000508500 SCRIBQ14160 1630 aa33.06■■■□□ 2.88
LMNA-222ENST00000508500 CC2D2AQ9P2K1 1620 aa32.84■■■□□ 2.85
LMNA-222ENST00000508500 EIF4G1Q04637 1599 aaKnown RBP32.74■■■□□ 2.83
LMNA-222ENST00000508500 CECR2Q9BXF3 1484 aa32.68■■■□□ 2.82
LMNA-222ENST00000508500 NCAPD3P42695 1498 aa31.66■■■□□ 2.66
LMNA-222ENST00000508500 SMARCA4P51532 1647 aa31.58■■■□□ 2.65
LMNA-222ENST00000508500 ATAD2BQ9ULI0 1458 aa31.52■■■□□ 2.64
LMNA-222ENST00000508500 HMGXB3Q12766 1538 aa31.44■■■□□ 2.62
LMNA-222ENST00000508500 DNAJC5Q9H3Z4 198 aa31.44■■■□□ 2.62
LMNA-222ENST00000508500 SMARCA2P51531 1590 aa31.41■■■□□ 2.62
LMNA-222ENST00000508500 BAZ1AQ9NRL2 1556 aaPredicted RBP31.4■■■□□ 2.62
LMNA-222ENST00000508500 CUX2O14529 1486 aa31.36■■■□□ 2.61
LMNA-222ENST00000508500 PEG3Q9GZU2 1588 aa31.27■■■□□ 2.6
LMNA-222ENST00000508500 MROH2BQ7Z745 1585 aa31.26■■■□□ 2.6
LMNA-222ENST00000508500 ERCC6Q03468 1493 aa31.22■■■□□ 2.59
LMNA-222ENST00000508500 BAZ1BQ9UIG0 1483 aaKnown RBP31.18■■■□□ 2.58
LMNA-222ENST00000508500 NESP48681 1621 aa31.16■■■□□ 2.58
LMNA-222ENST00000508500 THOC2Q8NI27 1593 aaKnown RBP30.97■■■□□ 2.55
LMNA-222ENST00000508500 LAMC3Q9Y6N6 1575 aa30.96■■■□□ 2.55
LMNA-222ENST00000508500 WIZO95785 1651 aa30.94■■■□□ 2.54
LMNA-222ENST00000508500 KIF21AQ7Z4S6 1674 aa30.84■■■□□ 2.53
LMNA-222ENST00000508500 RSF1Q96T23 1441 aaPredicted RBP30.67■■■□□ 2.5
LMNA-222ENST00000508500 PDS5BQ9NTI5 1447 aa30.67■■■□□ 2.5
LMNA-222ENST00000508500 CADPSQ9ULU8 1353 aa30.62■■■□□ 2.49
LMNA-222ENST00000508500 WDR62O43379 1518 aa30.48■■■□□ 2.47
LMNA-222ENST00000508500 TOP2AP11388 1531 aaKnown RBP30.48■■■□□ 2.47
LMNA-222ENST00000508500 MRC2Q9UBG0 1479 aa30.47■■■□□ 2.47
LMNA-222ENST00000508500 CFTRP13569 1480 aa30.31■■■□□ 2.44
LMNA-222ENST00000508500 CEP164Q9UPV0 1460 aa30.3■■■□□ 2.44
LMNA-222ENST00000508500 FANCD2Q9BXW9 1451 aa30.27■■■□□ 2.44
LMNA-222ENST00000508500 PRDM2Q13029 1718 aa30.16■■■□□ 2.42
LMNA-222ENST00000508500 CCDC88BA6NC98 1476 aa30.15■■■□□ 2.42
LMNA-222ENST00000508500 URB2Q14146 1524 aaKnown RBP30.1■■■□□ 2.41
LMNA-222ENST00000508500 TRIM41Q8WV44 630 aa29.81■■■□□ 2.36
LMNA-222ENST00000508500 OSCARQ8IYS5 282 aa29.77■■■□□ 2.36
LMNA-222ENST00000508500 TOPBP1Q92547 1522 aa29.73■■■□□ 2.35
LMNA-222ENST00000508500 IFT140Q96RY7 1462 aa29.72■■■□□ 2.35
LMNA-222ENST00000508500 ZNF608Q9ULD9 1512 aaPredicted RBP29.71■■■□□ 2.35
LMNA-222ENST00000508500 DNMBPQ6XZF7 1577 aa29.64■■■□□ 2.34
LMNA-222ENST00000508500 ABCC8Q09428 1581 aa29.61■■■□□ 2.33
LMNA-222ENST00000508500 EIF4G3O43432 1585 aaKnown RBP29.58■■■□□ 2.33
LMNA-222ENST00000508500 RIMBP3CA6NJZ7 1639 aa29.56■■■□□ 2.32
LMNA-222ENST00000508500 RIMBP3BA6NNM3 1639 aa29.56■■■□□ 2.32
LMNA-222ENST00000508500 TARBP1Q13395 1621 aaKnown RBP29.56■■■□□ 2.32
LMNA-222ENST00000508500 RIMBP3Q9UFD9 1639 aa29.56■■■□□ 2.32
LMNA-222ENST00000508500 POLA1P09884 1462 aaPredicted RBP29.44■■■□□ 2.3
LMNA-222ENST00000508500 SUPT5HO00267 1087 aaKnown RBP29.44■■■□□ 2.3
LMNA-222ENST00000508500 ARHGEF11O15085 1522 aa29.43■■■□□ 2.3
LMNA-222ENST00000508500 CHD1O14646 1710 aa29.42■■■□□ 2.3
LMNA-222ENST00000508500 AQRO60306 1485 aaKnown RBP eCLIP29.38■■■□□ 2.292e-9■■■■■ 43.2
LMNA-222ENST00000508500 RAD54L2Q9Y4B4 1467 aa29.35■■■□□ 2.29
LMNA-222ENST00000508500 CUX1P39880 1505 aa29.34■■■□□ 2.29
LMNA-222ENST00000508500 FGD5Q6ZNL6 1462 aa29.29■■■□□ 2.28
LMNA-222ENST00000508500 SOGA1O94964 1423 aa29.28■■■□□ 2.28
LMNA-222ENST00000508500 WDR97A6NE52 1622 aa29.23■■■□□ 2.27
LMNA-222ENST00000508500 TDRD9Q8NDG6 1382 aaKnown RBP29.2■■■□□ 2.26
LMNA-222ENST00000508500 ARAP1Q96P48 1450 aa29.15■■■□□ 2.26
LMNA-222ENST00000508500 CLASP1Q7Z460 1538 aa29.1■■■□□ 2.25
LMNA-222ENST00000508500 SNAPC4Q5SXM2 1469 aa29.09■■■□□ 2.25
LMNA-222ENST00000508500 CYB5RLQ6IPT4 315 aa29.04■■■□□ 2.24
LMNA-222ENST00000508500 MAGI1Q96QZ7 1491 aaPredicted RBP29.04■■■□□ 2.24
LMNA-222ENST00000508500 FBLN2P98095 1184 aa29.02■■■□□ 2.24
LMNA-222ENST00000508500 PBRM1Q86U86 1689 aa29.01■■■□□ 2.23
LMNA-222ENST00000508500 GRIN2BQ13224 1484 aa28.99■■■□□ 2.23
LMNA-222ENST00000508500 BIVM-ERCC5R4GMW8 1640 aa28.98■■■□□ 2.23
LMNA-222ENST00000508500 ABCA10Q8WWZ4 1543 aa28.97■■■□□ 2.23
LMNA-222ENST00000508500 ABCA5Q8WWZ7 1642 aa28.95■■■□□ 2.23
LMNA-222ENST00000508500 SYNJ1O43426 1573 aa28.95■■■□□ 2.22
LMNA-222ENST00000508500 TOP2BQ02880 1626 aa28.94■■■□□ 2.22
LMNA-222ENST00000508500 SYNJ2O15056 1496 aa28.93■■■□□ 2.22
LMNA-222ENST00000508500 GAPVD1Q14C86 1478 aa28.93■■■□□ 2.22
LMNA-222ENST00000508500 WRNQ14191 1432 aaPredicted RBP eCLIP28.88■■■□□ 2.21
LMNA-222ENST00000508500 CHMP7Q8WUX9 453 aaPredicted RBP28.85■■■□□ 2.21
LMNA-222ENST00000508500 ADAMTS12P58397 1594 aa28.69■■■□□ 2.18
LMNA-222ENST00000508500 TRHP20396 242 aaPredicted RBP28.66■■■□□ 2.18
LMNA-222ENST00000508500 GRIN2AQ12879 1464 aa28.65■■■□□ 2.18
LMNA-222ENST00000508500 CEP170Q5SW79 1584 aa28.61■■■□□ 2.17
LMNA-222ENST00000508500 NUP160Q12769 1436 aa28.6■■■□□ 2.17
LMNA-222ENST00000508500 ERICH3Q5RHP9 1530 aa28.6■■■□□ 2.17
LMNA-222ENST00000508500 ERCC6L2Q5T890 1561 aa28.6■■■□□ 2.17
LMNA-222ENST00000508500 SHROOM2Q13796 1616 aa28.57■■■□□ 2.16
LMNA-222ENST00000508500 FHAD1B1AJZ9 1412 aa28.56■■■□□ 2.16
LMNA-222ENST00000508500 IGF1RP08069 1367 aa28.3■■■□□ 2.12
LMNA-222ENST00000508500 RUSC2Q8N2Y8 1516 aa28.29■■■□□ 2.12
LMNA-222ENST00000508500 KIF27Q86VH2 1401 aa28.28■■■□□ 2.12
LMNA-222ENST00000508500 KIF13AQ9H1H9 1805 aa28.26■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms