RNA–Protein interactions for RNA: ENST00000508387.5

NR1I3-225, Transcript of nuclear receptor subfamily 1 group I member 3, humanhuman

TSL 1 (best) BASIC

Gene NR1I3, Length 634 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1I3-225ENST00000508387 NISCHQ9Y2I1 1504 aa31.96■■■□□ 2.71
NR1I3-225ENST00000508387 CCDC180Q9P1Z9 1646 aa28.57■■■□□ 2.16
NR1I3-225ENST00000508387 ABCC9O60706 1549 aa28.36■■■□□ 2.13
NR1I3-225ENST00000508387 RB1CC1Q8TDY2 1594 aa27.03■■□□□ 1.92
NR1I3-225ENST00000508387 NACADO15069 1562 aa26.88■■□□□ 1.89
NR1I3-225ENST00000508387 DCAF8L2P0C7V8 631 aa26.81■■□□□ 1.88
NR1I3-225ENST00000508387 ZCCHC6Q5VYS8 1495 aaKnown RBP26.58■■□□□ 1.85
NR1I3-225ENST00000508387 UNC13AQ9UPW8 1703 aa26.58■■□□□ 1.85
NR1I3-225ENST00000508387 MYO15BQ96JP2 1530 aa26.56■■□□□ 1.84
NR1I3-225ENST00000508387 PABPN1Q86U42 306 aaKnown RBP eCLIP26.42■■□□□ 1.82
NR1I3-225ENST00000508387 DNAJC5BQ9UF47 199 aa26.36■■□□□ 1.81
NR1I3-225ENST00000508387 DCAF1Q9Y4B6 1507 aa26.35■■□□□ 1.81
NR1I3-225ENST00000508387 BICRAQ9NZM4 1560 aa26.33■■□□□ 1.81
NR1I3-225ENST00000508387 SCRIBQ14160 1630 aa26.15■■□□□ 1.78
NR1I3-225ENST00000508387 SHROOM4Q9ULL8 1493 aa25.84■■□□□ 1.73
NR1I3-225ENST00000508387 CC2D2AQ9P2K1 1620 aa25.63■■□□□ 1.69
NR1I3-225ENST00000508387 EIF4G1Q04637 1599 aaKnown RBP25.63■■□□□ 1.69
NR1I3-225ENST00000508387 CECR2Q9BXF3 1484 aa25.47■■□□□ 1.67
NR1I3-225ENST00000508387 SMARCA4P51532 1647 aa24.92■■□□□ 1.58
NR1I3-225ENST00000508387 ATAD2BQ9ULI0 1458 aa24.83■■□□□ 1.57
NR1I3-225ENST00000508387 NCAPD3P42695 1498 aa24.81■■□□□ 1.56
NR1I3-225ENST00000508387 BAZ1AQ9NRL2 1556 aaPredicted RBP24.77■■□□□ 1.56
NR1I3-225ENST00000508387 SMARCA2P51531 1590 aa24.73■■□□□ 1.55
NR1I3-225ENST00000508387 HMGXB3Q12766 1538 aa24.7■■□□□ 1.54
NR1I3-225ENST00000508387 MROH2BQ7Z745 1585 aa24.69■■□□□ 1.54
NR1I3-225ENST00000508387 PEG3Q9GZU2 1588 aa24.63■■□□□ 1.53
NR1I3-225ENST00000508387 BAZ1BQ9UIG0 1483 aaKnown RBP24.6■■□□□ 1.53
NR1I3-225ENST00000508387 NESP48681 1621 aa24.47■■□□□ 1.51
NR1I3-225ENST00000508387 WIZO95785 1651 aa24.43■■□□□ 1.5
NR1I3-225ENST00000508387 ERCC6Q03468 1493 aa24.39■■□□□ 1.5
NR1I3-225ENST00000508387 LAMC3Q9Y6N6 1575 aa24.25■■□□□ 1.47
NR1I3-225ENST00000508387 CUX2O14529 1486 aa24.23■■□□□ 1.47
NR1I3-225ENST00000508387 RSF1Q96T23 1441 aaPredicted RBP24.22■■□□□ 1.47
NR1I3-225ENST00000508387 KIF21AQ7Z4S6 1674 aa24.19■■□□□ 1.46
NR1I3-225ENST00000508387 THOC2Q8NI27 1593 aaKnown RBP24.18■■□□□ 1.46
NR1I3-225ENST00000508387 TOP2AP11388 1531 aaKnown RBP24.09■■□□□ 1.45
NR1I3-225ENST00000508387 CADPSQ9ULU8 1353 aa24.06■■□□□ 1.44
NR1I3-225ENST00000508387 PDS5BQ9NTI5 1447 aa24.02■■□□□ 1.44
NR1I3-225ENST00000508387 MRC2Q9UBG0 1479 aa23.88■■□□□ 1.41
NR1I3-225ENST00000508387 CFTRP13569 1480 aa23.87■■□□□ 1.41
NR1I3-225ENST00000508387 DNAJC5Q9H3Z4 198 aa23.87■■□□□ 1.41
NR1I3-225ENST00000508387 FANCD2Q9BXW9 1451 aa23.85■■□□□ 1.41
NR1I3-225ENST00000508387 WDR62O43379 1518 aa23.84■■□□□ 1.41
NR1I3-225ENST00000508387 CEP164Q9UPV0 1460 aa23.84■■□□□ 1.41
NR1I3-225ENST00000508387 CCDC88BA6NC98 1476 aa23.81■■□□□ 1.4
NR1I3-225ENST00000508387 PRDM2Q13029 1718 aa23.75■■□□□ 1.39
NR1I3-225ENST00000508387 URB2Q14146 1524 aaKnown RBP23.69■■□□□ 1.38
NR1I3-225ENST00000508387 TOPBP1Q92547 1522 aa23.45■■□□□ 1.34
NR1I3-225ENST00000508387 DNMBPQ6XZF7 1577 aa23.38■■□□□ 1.33
NR1I3-225ENST00000508387 ZNF608Q9ULD9 1512 aaPredicted RBP23.36■■□□□ 1.33
NR1I3-225ENST00000508387 SUPT5HO00267 1087 aaKnown RBP23.34■■□□□ 1.33
NR1I3-225ENST00000508387 IFT140Q96RY7 1462 aa23.33■■□□□ 1.33
NR1I3-225ENST00000508387 ABCC8Q09428 1581 aa23.28■■□□□ 1.32
NR1I3-225ENST00000508387 EIF4G3O43432 1585 aaKnown RBP23.27■■□□□ 1.32
NR1I3-225ENST00000508387 TARBP1Q13395 1621 aaKnown RBP23.25■■□□□ 1.31
NR1I3-225ENST00000508387 POLA1P09884 1462 aaPredicted RBP23.23■■□□□ 1.31
NR1I3-225ENST00000508387 CUX1P39880 1505 aa23.18■■□□□ 1.3
NR1I3-225ENST00000508387 RAD54L2Q9Y4B4 1467 aa23.17■■□□□ 1.3
NR1I3-225ENST00000508387 AQRO60306 1485 aaKnown RBP eCLIP23.15■■□□□ 1.3
NR1I3-225ENST00000508387 FGD5Q6ZNL6 1462 aa23.13■■□□□ 1.29
NR1I3-225ENST00000508387 OSCARQ8IYS5 282 aa23.09■■□□□ 1.29
NR1I3-225ENST00000508387 SOGA1O94964 1423 aa23.07■■□□□ 1.28
NR1I3-225ENST00000508387 CHD1O14646 1710 aa23.05■■□□□ 1.28
NR1I3-225ENST00000508387 TRIM41Q8WV44 630 aa23.03■■□□□ 1.28
NR1I3-225ENST00000508387 TDRD9Q8NDG6 1382 aaKnown RBP23.02■■□□□ 1.28
NR1I3-225ENST00000508387 WDR97A6NE52 1622 aa23.02■■□□□ 1.28
NR1I3-225ENST00000508387 RIMBP3CA6NJZ7 1639 aa22.95■■□□□ 1.26
NR1I3-225ENST00000508387 RIMBP3BA6NNM3 1639 aa22.95■■□□□ 1.26
NR1I3-225ENST00000508387 RIMBP3Q9UFD9 1639 aa22.95■■□□□ 1.26
NR1I3-225ENST00000508387 SNAPC4Q5SXM2 1469 aa22.94■■□□□ 1.26
NR1I3-225ENST00000508387 SYNJ1O43426 1573 aa22.9■■□□□ 1.26
NR1I3-225ENST00000508387 PBRM1Q86U86 1689 aa22.89■■□□□ 1.25
NR1I3-225ENST00000508387 BIVM-ERCC5R4GMW8 1640 aa22.87■■□□□ 1.25
NR1I3-225ENST00000508387 FBLN2P98095 1184 aa22.87■■□□□ 1.25
NR1I3-225ENST00000508387 ARHGEF11O15085 1522 aa22.87■■□□□ 1.25
NR1I3-225ENST00000508387 ABCA5Q8WWZ7 1642 aa22.86■■□□□ 1.25
NR1I3-225ENST00000508387 ABCA10Q8WWZ4 1543 aa22.85■■□□□ 1.25
NR1I3-225ENST00000508387 TOP2BQ02880 1626 aa22.84■■□□□ 1.25
NR1I3-225ENST00000508387 GRIN2BQ13224 1484 aa22.84■■□□□ 1.25
NR1I3-225ENST00000508387 WRNQ14191 1432 aaPredicted RBP eCLIP22.82■■□□□ 1.24
NR1I3-225ENST00000508387 GAPVD1Q14C86 1478 aa22.81■■□□□ 1.24
NR1I3-225ENST00000508387 MAGI1Q96QZ7 1491 aaPredicted RBP22.81■■□□□ 1.24
NR1I3-225ENST00000508387 CLASP1Q7Z460 1538 aa22.75■■□□□ 1.23
NR1I3-225ENST00000508387 SYNJ2O15056 1496 aa22.74■■□□□ 1.23
NR1I3-225ENST00000508387 CHMP7Q8WUX9 453 aaPredicted RBP22.71■■□□□ 1.23
NR1I3-225ENST00000508387 ARAP1Q96P48 1450 aa22.69■■□□□ 1.22
NR1I3-225ENST00000508387 ADAMTS12P58397 1594 aa22.67■■□□□ 1.22
NR1I3-225ENST00000508387 CYB5RLQ6IPT4 315 aa22.61■■□□□ 1.21
NR1I3-225ENST00000508387 GRIN2AQ12879 1464 aa22.59■■□□□ 1.21
NR1I3-225ENST00000508387 CEP170Q5SW79 1584 aa22.56■■□□□ 1.2
NR1I3-225ENST00000508387 ERICH3Q5RHP9 1530 aa22.55■■□□□ 1.2
NR1I3-225ENST00000508387 FHAD1B1AJZ9 1412 aa22.51■■□□□ 1.19
NR1I3-225ENST00000508387 ERCC6L2Q5T890 1561 aa22.5■■□□□ 1.19
NR1I3-225ENST00000508387 NUP160Q12769 1436 aa22.48■■□□□ 1.19
NR1I3-225ENST00000508387 SHROOM2Q13796 1616 aa22.4■■□□□ 1.18
NR1I3-225ENST00000508387 RUSC2Q8N2Y8 1516 aa22.35■■□□□ 1.17
NR1I3-225ENST00000508387 KIF27Q86VH2 1401 aa22.33■■□□□ 1.17
NR1I3-225ENST00000508387 IGF1RP08069 1367 aa22.31■■□□□ 1.16
NR1I3-225ENST00000508387 CUL7Q14999 1698 aa22.3■■□□□ 1.16
NR1I3-225ENST00000508387 TRHP20396 242 aaPredicted RBP22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms