RNA–Protein interactions for RNA: ENST00000508386.1

KDM3B-205, Transcript of lysine demethylase 3B, humanhuman

TSL 4

Gene KDM3B, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3B-205ENST00000508386 AEBP2Q6ZN18 517 aaPredicted RBP15.96■□□□□ 0.15
KDM3B-205ENST00000508386 CHIC1Q5VXU3 224 aa15.29■□□□□ 0.04
KDM3B-205ENST00000508386 NISCHQ9Y2I1 1504 aa14.92□□□□□ -0.02
KDM3B-205ENST00000508386 ABCC9O60706 1549 aa13.85□□□□□ -0.19
KDM3B-205ENST00000508386 SENP3Q9H4L4 574 aaPredicted RBP13.71□□□□□ -0.21
KDM3B-205ENST00000508386 PHF23Q9BUL5 403 aaPredicted RBP13.5□□□□□ -0.25
KDM3B-205ENST00000508386 DNAJC5BQ9UF47 199 aa13.43□□□□□ -0.26
KDM3B-205ENST00000508386 CCDC180Q9P1Z9 1646 aa13.42□□□□□ -0.26
KDM3B-205ENST00000508386 RB1CC1Q8TDY2 1594 aa12.94□□□□□ -0.34
KDM3B-205ENST00000508386 PABPN1Q86U42 306 aaKnown RBP eCLIP12.91□□□□□ -0.34
KDM3B-205ENST00000508386 NACADO15069 1562 aa12.8□□□□□ -0.36
KDM3B-205ENST00000508386 DCAF8L2P0C7V8 631 aa12.74□□□□□ -0.37
KDM3B-205ENST00000508386 UNC13AQ9UPW8 1703 aa12.71□□□□□ -0.38
KDM3B-205ENST00000508386 BICRAQ9NZM4 1560 aa12.7□□□□□ -0.38
KDM3B-205ENST00000508386 FOXD1Q16676 465 aa12.7□□□□□ -0.38
KDM3B-205ENST00000508386 MYO15BQ96JP2 1530 aa12.52□□□□□ -0.4
KDM3B-205ENST00000508386 CECR2Q9BXF3 1484 aa12.48□□□□□ -0.41
KDM3B-205ENST00000508386 CC2D2AQ9P2K1 1620 aa12.47□□□□□ -0.41
KDM3B-205ENST00000508386 DNAJC5Q9H3Z4 198 aa12.46□□□□□ -0.41
KDM3B-205ENST00000508386 PLPPR3Q6T4P5 718 aa12.42□□□□□ -0.42
KDM3B-205ENST00000508386 EIF4G1Q04637 1599 aaKnown RBP12.35□□□□□ -0.43
KDM3B-205ENST00000508386 SHROOM4Q9ULL8 1493 aa12.34□□□□□ -0.43
KDM3B-205ENST00000508386 ZCCHC6Q5VYS8 1495 aaKnown RBP12.27□□□□□ -0.44
KDM3B-205ENST00000508386 SCRIBQ14160 1630 aa12.27□□□□□ -0.44
KDM3B-205ENST00000508386 DCAF1Q9Y4B6 1507 aa12.26□□□□□ -0.45
KDM3B-205ENST00000508386 CUX2O14529 1486 aa11.99□□□□□ -0.49
KDM3B-205ENST00000508386 MSH5O43196 834 aa11.93□□□□□ -0.5
KDM3B-205ENST00000508386 PIAS4Q8N2W9 510 aaPredicted RBP11.93□□□□□ -0.5
KDM3B-205ENST00000508386 PPP6R1Q9UPN7 881 aa11.9□□□□□ -0.5
KDM3B-205ENST00000508386 ERCC6Q03468 1493 aa11.89□□□□□ -0.51
KDM3B-205ENST00000508386 ADRA2BP18089 450 aa11.89□□□□□ -0.51
KDM3B-205ENST00000508386 NCAPD3P42695 1498 aa11.89□□□□□ -0.51
KDM3B-205ENST00000508386 NESP48681 1621 aa11.85□□□□□ -0.51
KDM3B-205ENST00000508386 ATAD2BQ9ULI0 1458 aa11.81□□□□□ -0.52
KDM3B-205ENST00000508386 TRIM41Q8WV44 630 aa11.74□□□□□ -0.53
KDM3B-205ENST00000508386 THOC2Q8NI27 1593 aaKnown RBP11.71□□□□□ -0.54
KDM3B-205ENST00000508386 HMGXB3Q12766 1538 aa11.7□□□□□ -0.54
KDM3B-205ENST00000508386 SMARCA2P51531 1590 aa11.67□□□□□ -0.54
KDM3B-205ENST00000508386 SMARCA4P51532 1647 aa11.67□□□□□ -0.54
KDM3B-205ENST00000508386 BAZ1BQ9UIG0 1483 aaKnown RBP11.61□□□□□ -0.55
KDM3B-205ENST00000508386 KIF21AQ7Z4S6 1674 aa11.59□□□□□ -0.55
KDM3B-205ENST00000508386 LAMC3Q9Y6N6 1575 aa11.58□□□□□ -0.55
KDM3B-205ENST00000508386 PEG3Q9GZU2 1588 aa11.56□□□□□ -0.56
KDM3B-205ENST00000508386 PDS5BQ9NTI5 1447 aa11.55□□□□□ -0.56
KDM3B-205ENST00000508386 BAZ1AQ9NRL2 1556 aaPredicted RBP11.54□□□□□ -0.56
KDM3B-205ENST00000508386 MROH2BQ7Z745 1585 aa11.53□□□□□ -0.56
KDM3B-205ENST00000508386 CADPSQ9ULU8 1353 aa11.51□□□□□ -0.57
KDM3B-205ENST00000508386 MRC2Q9UBG0 1479 aa11.48□□□□□ -0.57
KDM3B-205ENST00000508386 WDR62O43379 1518 aa11.47□□□□□ -0.57
KDM3B-205ENST00000508386 OSCARQ8IYS5 282 aa11.45□□□□□ -0.58
KDM3B-205ENST00000508386 POTEDQ86YR6 584 aa11.44□□□□□ -0.58
KDM3B-205ENST00000508386 FANCD2Q9BXW9 1451 aa11.35□□□□□ -0.59
KDM3B-205ENST00000508386 CEP164Q9UPV0 1460 aa11.35□□□□□ -0.59
KDM3B-205ENST00000508386 WIZO95785 1651 aa11.34□□□□□ -0.59
KDM3B-205ENST00000508386 URB2Q14146 1524 aaKnown RBP11.32□□□□□ -0.6
KDM3B-205ENST00000508386 RIMBP3CA6NJZ7 1639 aa11.31□□□□□ -0.6
KDM3B-205ENST00000508386 RIMBP3BA6NNM3 1639 aa11.31□□□□□ -0.6
KDM3B-205ENST00000508386 RIMBP3Q9UFD9 1639 aa11.31□□□□□ -0.6
KDM3B-205ENST00000508386 CFTRP13569 1480 aa11.31□□□□□ -0.6
KDM3B-205ENST00000508386 ZNF608Q9ULD9 1512 aaPredicted RBP11.26□□□□□ -0.61
KDM3B-205ENST00000508386 ARHGEF11O15085 1522 aa11.25□□□□□ -0.61
KDM3B-205ENST00000508386 CYB5RLQ6IPT4 315 aa11.24□□□□□ -0.61
KDM3B-205ENST00000508386 RSF1Q96T23 1441 aaPredicted RBP11.18□□□□□ -0.62
KDM3B-205ENST00000508386 ARAP1Q96P48 1450 aa11.15□□□□□ -0.62
KDM3B-205ENST00000508386 IFT140Q96RY7 1462 aa11.15□□□□□ -0.62
KDM3B-205ENST00000508386 TRHP20396 242 aaPredicted RBP11.15□□□□□ -0.62
KDM3B-205ENST00000508386 TOP2AP11388 1531 aaKnown RBP11.13□□□□□ -0.63
KDM3B-205ENST00000508386 TOPBP1Q92547 1522 aa11.11□□□□□ -0.63
KDM3B-205ENST00000508386 AQRO60306 1485 aaKnown RBP eCLIP11.11□□□□□ -0.637e-6■■□□□ 12.2
KDM3B-205ENST00000508386 EIF4G3O43432 1585 aaKnown RBP11.08□□□□□ -0.64
KDM3B-205ENST00000508386 CCDC88BA6NC98 1476 aa11.08□□□□□ -0.64
KDM3B-205ENST00000508386 CHD1O14646 1710 aa11.06□□□□□ -0.64
KDM3B-205ENST00000508386 FBLN2P98095 1184 aa11.05□□□□□ -0.64
KDM3B-205ENST00000508386 PRDM2Q13029 1718 aa11.04□□□□□ -0.64
KDM3B-205ENST00000508386 TARBP1Q13395 1621 aaKnown RBP11.04□□□□□ -0.64
KDM3B-205ENST00000508386 DNMBPQ6XZF7 1577 aa11□□□□□ -0.65
KDM3B-205ENST00000508386 SCAF1Q9H7N4 1312 aaKnown RBP11□□□□□ -0.65
KDM3B-205ENST00000508386 RAD54L2Q9Y4B4 1467 aa11□□□□□ -0.65
KDM3B-205ENST00000508386 TDRD9Q8NDG6 1382 aaKnown RBP10.99□□□□□ -0.65
KDM3B-205ENST00000508386 POLA1P09884 1462 aaPredicted RBP10.99□□□□□ -0.65
KDM3B-205ENST00000508386 ABCC8Q09428 1581 aa10.99□□□□□ -0.65
KDM3B-205ENST00000508386 CLASP1Q7Z460 1538 aa10.96□□□□□ -0.65
KDM3B-205ENST00000508386 SNAPC4Q5SXM2 1469 aa10.93□□□□□ -0.66
KDM3B-205ENST00000508386 SOGA1O94964 1423 aa10.92□□□□□ -0.66
KDM3B-205ENST00000508386 PPP4R3CPQ6ZMV5 832 aa10.92□□□□□ -0.66
KDM3B-205ENST00000508386 CHMP7Q8WUX9 453 aaPredicted RBP10.91□□□□□ -0.66
KDM3B-205ENST00000508386 MAPK8IP2Q13387 824 aaPredicted RBP10.88□□□□□ -0.67
KDM3B-205ENST00000508386 GAPVD1Q14C86 1478 aa10.86□□□□□ -0.67
KDM3B-205ENST00000508386 FGD5Q6ZNL6 1462 aa10.86□□□□□ -0.67
KDM3B-205ENST00000508386 DMRT2Q9Y5R5 561 aa10.85□□□□□ -0.67
KDM3B-205ENST00000508386 MAGI1Q96QZ7 1491 aaPredicted RBP10.85□□□□□ -0.67
KDM3B-205ENST00000508386 SYNJ1O43426 1573 aa10.85□□□□□ -0.67
KDM3B-205ENST00000508386 SYNJ2O15056 1496 aa10.84□□□□□ -0.67
KDM3B-205ENST00000508386 GRIN2BQ13224 1484 aa10.84□□□□□ -0.67
KDM3B-205ENST00000508386 ERCC6L2Q5T890 1561 aa10.84□□□□□ -0.67
KDM3B-205ENST00000508386 CUX1P39880 1505 aa10.84□□□□□ -0.67
KDM3B-205ENST00000508386 WDR97A6NE52 1622 aa10.8□□□□□ -0.68
KDM3B-205ENST00000508386 PBRM1Q86U86 1689 aa10.73□□□□□ -0.69
KDM3B-205ENST00000508386 CEP170Q5SW79 1584 aa10.72□□□□□ -0.69
KDM3B-205ENST00000508386 KDM4FA0A1W2PPD8 638 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 132.5 ms