RNA–Protein interactions for RNA: ENST00000508070.1

HMGCR-206, Transcript of 3-hydroxy-3-methylglutaryl-CoA reductase, humanhuman

TSL 3

Gene HMGCR, Length 450 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCR-206ENST00000508070 NISCHQ9Y2I1 1504 aa19.91■□□□□ 0.78
HMGCR-206ENST00000508070 ABCC9O60706 1549 aa18.17■□□□□ 0.5
HMGCR-206ENST00000508070 CCDC180Q9P1Z9 1646 aa17.9■□□□□ 0.46
HMGCR-206ENST00000508070 DNAJC5BQ9UF47 199 aa17.32■□□□□ 0.36
HMGCR-206ENST00000508070 RB1CC1Q8TDY2 1594 aa17.19■□□□□ 0.34
HMGCR-206ENST00000508070 NACADO15069 1562 aa17.05■□□□□ 0.32
HMGCR-206ENST00000508070 DCAF8L2P0C7V8 631 aa16.99■□□□□ 0.31
HMGCR-206ENST00000508070 PABPN1Q86U42 306 aaKnown RBP eCLIP16.93■□□□□ 0.3
HMGCR-206ENST00000508070 MYO15BQ96JP2 1530 aa16.75■□□□□ 0.27
HMGCR-206ENST00000508070 UNC13AQ9UPW8 1703 aa16.68■□□□□ 0.26
HMGCR-206ENST00000508070 BICRAQ9NZM4 1560 aa16.67■□□□□ 0.26
HMGCR-206ENST00000508070 SHROOM4Q9ULL8 1493 aa16.48■□□□□ 0.23
HMGCR-206ENST00000508070 DCAF1Q9Y4B6 1507 aa16.44■□□□□ 0.22
HMGCR-206ENST00000508070 CECR2Q9BXF3 1484 aa16.42■□□□□ 0.22
HMGCR-206ENST00000508070 ZCCHC6Q5VYS8 1495 aaKnown RBP16.41■□□□□ 0.22
HMGCR-206ENST00000508070 CC2D2AQ9P2K1 1620 aa16.37■□□□□ 0.21
HMGCR-206ENST00000508070 EIF4G1Q04637 1599 aaKnown RBP16.29■□□□□ 0.2
HMGCR-206ENST00000508070 SCRIBQ14160 1630 aa16.27■□□□□ 0.19
HMGCR-206ENST00000508070 DNAJC5Q9H3Z4 198 aa16.13■□□□□ 0.17
HMGCR-206ENST00000508070 CUX2O14529 1486 aa15.78■□□□□ 0.12
HMGCR-206ENST00000508070 NCAPD3P42695 1498 aa15.78■□□□□ 0.12
HMGCR-206ENST00000508070 ERCC6Q03468 1493 aa15.72■□□□□ 0.11
HMGCR-206ENST00000508070 ATAD2BQ9ULI0 1458 aa15.66■□□□□ 0.1
HMGCR-206ENST00000508070 SMARCA2P51531 1590 aa15.59■□□□□ 0.09
HMGCR-206ENST00000508070 HMGXB3Q12766 1538 aa15.57■□□□□ 0.08
HMGCR-206ENST00000508070 NESP48681 1621 aa15.53■□□□□ 0.08
HMGCR-206ENST00000508070 SMARCA4P51532 1647 aa15.52■□□□□ 0.08
HMGCR-206ENST00000508070 BAZ1BQ9UIG0 1483 aaKnown RBP15.48■□□□□ 0.07
HMGCR-206ENST00000508070 BAZ1AQ9NRL2 1556 aaPredicted RBP15.45■□□□□ 0.06
HMGCR-206ENST00000508070 PEG3Q9GZU2 1588 aa15.41■□□□□ 0.06
HMGCR-206ENST00000508070 LAMC3Q9Y6N6 1575 aa15.4■□□□□ 0.06
HMGCR-206ENST00000508070 PDS5BQ9NTI5 1447 aa15.38■□□□□ 0.05
HMGCR-206ENST00000508070 THOC2Q8NI27 1593 aaKnown RBP15.36■□□□□ 0.05
HMGCR-206ENST00000508070 MROH2BQ7Z745 1585 aa15.31■□□□□ 0.04
HMGCR-206ENST00000508070 CADPSQ9ULU8 1353 aa15.3■□□□□ 0.04
HMGCR-206ENST00000508070 TRIM41Q8WV44 630 aa15.27■□□□□ 0.04
HMGCR-206ENST00000508070 KIF21AQ7Z4S6 1674 aa15.25■□□□□ 0.03
HMGCR-206ENST00000508070 MRC2Q9UBG0 1479 aa15.2■□□□□ 0.02
HMGCR-206ENST00000508070 WDR62O43379 1518 aa15.15■□□□□ 0.02
HMGCR-206ENST00000508070 OSCARQ8IYS5 282 aa15.12■□□□□ 0.01
HMGCR-206ENST00000508070 CEP164Q9UPV0 1460 aa15.1■□□□□ 0.01
HMGCR-206ENST00000508070 WIZO95785 1651 aa15.07■□□□□ 0
HMGCR-206ENST00000508070 FANCD2Q9BXW9 1451 aa15.07■□□□□ 0
HMGCR-206ENST00000508070 CFTRP13569 1480 aa15.04■□□□□ -0
HMGCR-206ENST00000508070 RSF1Q96T23 1441 aaPredicted RBP14.95□□□□□ -0.02
HMGCR-206ENST00000508070 URB2Q14146 1524 aaKnown RBP14.94□□□□□ -0.02
HMGCR-206ENST00000508070 TOP2AP11388 1531 aaKnown RBP14.9□□□□□ -0.02
HMGCR-206ENST00000508070 IFT140Q96RY7 1462 aa14.83□□□□□ -0.03
HMGCR-206ENST00000508070 RIMBP3CA6NJZ7 1639 aa14.79□□□□□ -0.04
HMGCR-206ENST00000508070 RIMBP3BA6NNM3 1639 aa14.79□□□□□ -0.04
HMGCR-206ENST00000508070 RIMBP3Q9UFD9 1639 aa14.79□□□□□ -0.04
HMGCR-206ENST00000508070 ZNF608Q9ULD9 1512 aaPredicted RBP14.79□□□□□ -0.04
HMGCR-206ENST00000508070 ABCC8Q09428 1581 aa14.77□□□□□ -0.04
HMGCR-206ENST00000508070 CCDC88BA6NC98 1476 aa14.77□□□□□ -0.04
HMGCR-206ENST00000508070 CYB5RLQ6IPT4 315 aa14.76□□□□□ -0.05
HMGCR-206ENST00000508070 ARHGEF11O15085 1522 aa14.75□□□□□ -0.05
HMGCR-206ENST00000508070 TOPBP1Q92547 1522 aa14.75□□□□□ -0.05
HMGCR-206ENST00000508070 PRDM2Q13029 1718 aa14.72□□□□□ -0.05
HMGCR-206ENST00000508070 FBLN2P98095 1184 aa14.67□□□□□ -0.06
HMGCR-206ENST00000508070 AQRO60306 1485 aaKnown RBP eCLIP14.66□□□□□ -0.064e-8■■■■■ 45.4
HMGCR-206ENST00000508070 TRHP20396 242 aaPredicted RBP14.66□□□□□ -0.06
HMGCR-206ENST00000508070 DNMBPQ6XZF7 1577 aa14.65□□□□□ -0.06
HMGCR-206ENST00000508070 EIF4G3O43432 1585 aaKnown RBP14.64□□□□□ -0.07
HMGCR-206ENST00000508070 TARBP1Q13395 1621 aaKnown RBP14.6□□□□□ -0.07
HMGCR-206ENST00000508070 ARAP1Q96P48 1450 aa14.59□□□□□ -0.07
HMGCR-206ENST00000508070 POLA1P09884 1462 aaPredicted RBP14.58□□□□□ -0.08
HMGCR-206ENST00000508070 SOGA1O94964 1423 aa14.57□□□□□ -0.08
HMGCR-206ENST00000508070 TDRD9Q8NDG6 1382 aaKnown RBP14.56□□□□□ -0.08
HMGCR-206ENST00000508070 CHD1O14646 1710 aa14.55□□□□□ -0.08
HMGCR-206ENST00000508070 CHMP7Q8WUX9 453 aaPredicted RBP14.54□□□□□ -0.08
HMGCR-206ENST00000508070 RAD54L2Q9Y4B4 1467 aa14.54□□□□□ -0.08
HMGCR-206ENST00000508070 SNAPC4Q5SXM2 1469 aa14.47□□□□□ -0.09
HMGCR-206ENST00000508070 WDR97A6NE52 1622 aa14.46□□□□□ -0.09
HMGCR-206ENST00000508070 FGD5Q6ZNL6 1462 aa14.45□□□□□ -0.1
HMGCR-206ENST00000508070 MAGI1Q96QZ7 1491 aaPredicted RBP14.45□□□□□ -0.1
HMGCR-206ENST00000508070 GRIN2BQ13224 1484 aa14.44□□□□□ -0.1
HMGCR-206ENST00000508070 CLASP1Q7Z460 1538 aa14.44□□□□□ -0.1
HMGCR-206ENST00000508070 SYNJ1O43426 1573 aa14.43□□□□□ -0.1
HMGCR-206ENST00000508070 AEBP2Q6ZN18 517 aaPredicted RBP14.43□□□□□ -0.1
HMGCR-206ENST00000508070 SYNJ2O15056 1496 aa14.41□□□□□ -0.1
HMGCR-206ENST00000508070 CUX1P39880 1505 aa14.39□□□□□ -0.11
HMGCR-206ENST00000508070 GAPVD1Q14C86 1478 aa14.36□□□□□ -0.11
HMGCR-206ENST00000508070 ABCA10Q8WWZ4 1543 aa14.3□□□□□ -0.12
HMGCR-206ENST00000508070 PBRM1Q86U86 1689 aa14.24□□□□□ -0.13
HMGCR-206ENST00000508070 GRIN2AQ12879 1464 aa14.23□□□□□ -0.13
HMGCR-206ENST00000508070 WRNQ14191 1432 aaPredicted RBP eCLIP14.23□□□□□ -0.13
HMGCR-206ENST00000508070 ABCA5Q8WWZ7 1642 aa14.23□□□□□ -0.13
HMGCR-206ENST00000508070 NUP160Q12769 1436 aa14.22□□□□□ -0.13
HMGCR-206ENST00000508070 FHAD1B1AJZ9 1412 aa14.18□□□□□ -0.14
HMGCR-206ENST00000508070 CEP170Q5SW79 1584 aa14.17□□□□□ -0.14
HMGCR-206ENST00000508070 ERCC6L2Q5T890 1561 aa14.17□□□□□ -0.14
HMGCR-206ENST00000508070 SUPT5HO00267 1087 aaKnown RBP14.15□□□□□ -0.14
HMGCR-206ENST00000508070 JPH4Q96JJ6 628 aa14.15□□□□□ -0.14
HMGCR-206ENST00000508070 ADAMTS12P58397 1594 aa14.13□□□□□ -0.15
HMGCR-206ENST00000508070 SHROOM2Q13796 1616 aa14.12□□□□□ -0.15
HMGCR-206ENST00000508070 NPM1P06748 294 aaKnown RBP eCLIP14.11□□□□□ -0.15
HMGCR-206ENST00000508070 PRG4Q92954 1404 aaPredicted RBP14.11□□□□□ -0.15
HMGCR-206ENST00000508070 ERICH3Q5RHP9 1530 aa14.1□□□□□ -0.15
HMGCR-206ENST00000508070 TOP2BQ02880 1626 aa14.08□□□□□ -0.15
HMGCR-206ENST00000508070 FAM69CQ0P6D2 419 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms