RNA–Protein interactions for RNA: ENST00000507902.5

PTPN13-206, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

TSL 4

Gene PTPN13, Length 516 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-206ENST00000507902 NISCHQ9Y2I1 1504 aa33.58■■■□□ 2.97
PTPN13-206ENST00000507902 CCDC180Q9P1Z9 1646 aa29.95■■■□□ 2.38
PTPN13-206ENST00000507902 ABCC9O60706 1549 aa29.14■■■□□ 2.25
PTPN13-206ENST00000507902 RB1CC1Q8TDY2 1594 aa28.16■■■□□ 2.1
PTPN13-206ENST00000507902 NACADO15069 1562 aa28.13■■■□□ 2.09
PTPN13-206ENST00000507902 MYO15BQ96JP2 1530 aa27.99■■■□□ 2.07
PTPN13-206ENST00000507902 ZCCHC6Q5VYS8 1495 aaKnown RBP27.99■■■□□ 2.07
PTPN13-206ENST00000507902 DCAF8L2P0C7V8 631 aa27.96■■■□□ 2.07
PTPN13-206ENST00000507902 DCAF1Q9Y4B6 1507 aa27.86■■■□□ 2.05
PTPN13-206ENST00000507902 UNC13AQ9UPW8 1703 aa27.44■■□□□ 1.98
PTPN13-206ENST00000507902 SCRIBQ14160 1630 aa27.23■■□□□ 1.95
PTPN13-206ENST00000507902 BICRAQ9NZM4 1560 aa27.19■■□□□ 1.94
PTPN13-206ENST00000507902 PABPN1Q86U42 306 aaKnown RBP eCLIP27.16■■□□□ 1.94
PTPN13-206ENST00000507902 SHROOM4Q9ULL8 1493 aa27.11■■□□□ 1.93
PTPN13-206ENST00000507902 DNAJC5BQ9UF47 199 aa26.58■■□□□ 1.85
PTPN13-206ENST00000507902 EIF4G1Q04637 1599 aaKnown RBP26.54■■□□□ 1.84
PTPN13-206ENST00000507902 CC2D2AQ9P2K1 1620 aa26.4■■□□□ 1.82
PTPN13-206ENST00000507902 CECR2Q9BXF3 1484 aa26.23■■□□□ 1.79
PTPN13-206ENST00000507902 BAZ1AQ9NRL2 1556 aaPredicted RBP26.08■■□□□ 1.77
PTPN13-206ENST00000507902 SMARCA4P51532 1647 aa26.07■■□□□ 1.76
PTPN13-206ENST00000507902 SMARCA2P51531 1590 aa25.95■■□□□ 1.75
PTPN13-206ENST00000507902 NCAPD3P42695 1498 aa25.9■■□□□ 1.74
PTPN13-206ENST00000507902 ATAD2BQ9ULI0 1458 aa25.89■■□□□ 1.73
PTPN13-206ENST00000507902 PEG3Q9GZU2 1588 aa25.85■■□□□ 1.73
PTPN13-206ENST00000507902 HMGXB3Q12766 1538 aa25.83■■□□□ 1.73
PTPN13-206ENST00000507902 MROH2BQ7Z745 1585 aa25.82■■□□□ 1.72
PTPN13-206ENST00000507902 BAZ1BQ9UIG0 1483 aaKnown RBP25.73■■□□□ 1.71
PTPN13-206ENST00000507902 WIZO95785 1651 aa25.55■■□□□ 1.68
PTPN13-206ENST00000507902 RSF1Q96T23 1441 aaPredicted RBP25.54■■□□□ 1.68
PTPN13-206ENST00000507902 TOP2AP11388 1531 aaKnown RBP25.36■■□□□ 1.65
PTPN13-206ENST00000507902 LAMC3Q9Y6N6 1575 aa25.27■■□□□ 1.64
PTPN13-206ENST00000507902 ERCC6Q03468 1493 aa25.21■■□□□ 1.63
PTPN13-206ENST00000507902 NESP48681 1621 aa25.18■■□□□ 1.62
PTPN13-206ENST00000507902 CADPSQ9ULU8 1353 aa25.13■■□□□ 1.61
PTPN13-206ENST00000507902 PDS5BQ9NTI5 1447 aa25.09■■□□□ 1.61
PTPN13-206ENST00000507902 CFTRP13569 1480 aa25■■□□□ 1.59
PTPN13-206ENST00000507902 CCDC88BA6NC98 1476 aa24.98■■□□□ 1.59
PTPN13-206ENST00000507902 KIF21AQ7Z4S6 1674 aa24.97■■□□□ 1.59
PTPN13-206ENST00000507902 CUX2O14529 1486 aa24.96■■□□□ 1.59
PTPN13-206ENST00000507902 PRDM2Q13029 1718 aa24.9■■□□□ 1.58
PTPN13-206ENST00000507902 THOC2Q8NI27 1593 aaKnown RBP24.89■■□□□ 1.58
PTPN13-206ENST00000507902 CEP164Q9UPV0 1460 aa24.87■■□□□ 1.57
PTPN13-206ENST00000507902 FANCD2Q9BXW9 1451 aa24.85■■□□□ 1.57
PTPN13-206ENST00000507902 SUPT5HO00267 1087 aaKnown RBP24.85■■□□□ 1.57
PTPN13-206ENST00000507902 MRC2Q9UBG0 1479 aa24.81■■□□□ 1.56
PTPN13-206ENST00000507902 WDR62O43379 1518 aa24.73■■□□□ 1.55
PTPN13-206ENST00000507902 URB2Q14146 1524 aaKnown RBP24.56■■□□□ 1.52
PTPN13-206ENST00000507902 ABCC8Q09428 1581 aa24.55■■□□□ 1.52
PTPN13-206ENST00000507902 DNMBPQ6XZF7 1577 aa24.47■■□□□ 1.51
PTPN13-206ENST00000507902 TOPBP1Q92547 1522 aa24.45■■□□□ 1.51
PTPN13-206ENST00000507902 IFT140Q96RY7 1462 aa24.34■■□□□ 1.49
PTPN13-206ENST00000507902 CUX1P39880 1505 aa24.25■■□□□ 1.47
PTPN13-206ENST00000507902 POLA1P09884 1462 aaPredicted RBP24.24■■□□□ 1.47
PTPN13-206ENST00000507902 FGD5Q6ZNL6 1462 aa24.19■■□□□ 1.46
PTPN13-206ENST00000507902 TARBP1Q13395 1621 aaKnown RBP24.18■■□□□ 1.46
PTPN13-206ENST00000507902 SOGA1O94964 1423 aa24.14■■□□□ 1.45
PTPN13-206ENST00000507902 WRNQ14191 1432 aaPredicted RBP eCLIP24.14■■□□□ 1.45
PTPN13-206ENST00000507902 WDR97A6NE52 1622 aa24.13■■□□□ 1.45
PTPN13-206ENST00000507902 EIF4G3O43432 1585 aaKnown RBP24.12■■□□□ 1.45
PTPN13-206ENST00000507902 ZNF608Q9ULD9 1512 aaPredicted RBP24.12■■□□□ 1.45
PTPN13-206ENST00000507902 TOP2BQ02880 1626 aa24.1■■□□□ 1.45
PTPN13-206ENST00000507902 BIVM-ERCC5R4GMW8 1640 aa24.1■■□□□ 1.45
PTPN13-206ENST00000507902 RAD54L2Q9Y4B4 1467 aa24.07■■□□□ 1.44
PTPN13-206ENST00000507902 DNAJC5Q9H3Z4 198 aa24.05■■□□□ 1.44
PTPN13-206ENST00000507902 SYNJ1O43426 1573 aa24.04■■□□□ 1.44
PTPN13-206ENST00000507902 AQRO60306 1485 aaKnown RBP eCLIP23.99■■□□□ 1.43
PTPN13-206ENST00000507902 ABCA10Q8WWZ4 1543 aa23.98■■□□□ 1.43
PTPN13-206ENST00000507902 TDRD9Q8NDG6 1382 aaKnown RBP23.95■■□□□ 1.42
PTPN13-206ENST00000507902 GRIN2BQ13224 1484 aa23.9■■□□□ 1.42
PTPN13-206ENST00000507902 ABCA5Q8WWZ7 1642 aa23.89■■□□□ 1.42
PTPN13-206ENST00000507902 GAPVD1Q14C86 1478 aa23.88■■□□□ 1.41
PTPN13-206ENST00000507902 MAGI1Q96QZ7 1491 aaPredicted RBP23.87■■□□□ 1.41
PTPN13-206ENST00000507902 PBRM1Q86U86 1689 aa23.86■■□□□ 1.41
PTPN13-206ENST00000507902 OSCARQ8IYS5 282 aa23.85■■□□□ 1.41
PTPN13-206ENST00000507902 SNAPC4Q5SXM2 1469 aa23.83■■□□□ 1.41
PTPN13-206ENST00000507902 CHD1O14646 1710 aa23.8■■□□□ 1.4
PTPN13-206ENST00000507902 SYNJ2O15056 1496 aa23.75■■□□□ 1.39
PTPN13-206ENST00000507902 ERICH3Q5RHP9 1530 aa23.73■■□□□ 1.39
PTPN13-206ENST00000507902 FBLN2P98095 1184 aa23.72■■□□□ 1.39
PTPN13-206ENST00000507902 CHMP7Q8WUX9 453 aaPredicted RBP23.7■■□□□ 1.38
PTPN13-206ENST00000507902 ADAMTS12P58397 1594 aa23.67■■□□□ 1.38
PTPN13-206ENST00000507902 KIF27Q86VH2 1401 aa23.67■■□□□ 1.38
PTPN13-206ENST00000507902 FHAD1B1AJZ9 1412 aa23.62■■□□□ 1.37
PTPN13-206ENST00000507902 GRIN2AQ12879 1464 aa23.58■■□□□ 1.37
PTPN13-206ENST00000507902 CUL7Q14999 1698 aa23.55■■□□□ 1.36
PTPN13-206ENST00000507902 TRIM41Q8WV44 630 aa23.55■■□□□ 1.36
PTPN13-206ENST00000507902 CLASP1Q7Z460 1538 aa23.54■■□□□ 1.36
PTPN13-206ENST00000507902 ARHGEF11O15085 1522 aa23.49■■□□□ 1.35
PTPN13-206ENST00000507902 RIMBP3CA6NJZ7 1639 aa23.48■■□□□ 1.35
PTPN13-206ENST00000507902 RIMBP3BA6NNM3 1639 aa23.48■■□□□ 1.35
PTPN13-206ENST00000507902 RIMBP3Q9UFD9 1639 aa23.48■■□□□ 1.35
PTPN13-206ENST00000507902 IGF1RP08069 1367 aa23.47■■□□□ 1.35
PTPN13-206ENST00000507902 NUP160Q12769 1436 aa23.46■■□□□ 1.35
PTPN13-206ENST00000507902 CEP170Q5SW79 1584 aa23.43■■□□□ 1.34
PTPN13-206ENST00000507902 CARMIL1Q5VZK9 1371 aa23.37■■□□□ 1.33
PTPN13-206ENST00000507902 RUSC2Q8N2Y8 1516 aa23.33■■□□□ 1.32
PTPN13-206ENST00000507902 SHROOM2Q13796 1616 aa23.3■■□□□ 1.32
PTPN13-206ENST00000507902 RAPGEF2Q9Y4G8 1499 aa23.27■■□□□ 1.32
PTPN13-206ENST00000507902 EEA1Q15075 1411 aa23.26■■□□□ 1.31
PTPN13-206ENST00000507902 ARAP1Q96P48 1450 aa23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms