RNA–Protein interactions for RNA: ENST00000507784.5

RNF4-209, Transcript of ring finger protein 4, humanhuman

TSL 2

Gene RNF4, Length 582 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-209ENST00000507784 NISCHQ9Y2I1 1504 aa40.49■■■■■ 4.07
RNF4-209ENST00000507784 CCDC180Q9P1Z9 1646 aa35.58■■■■□ 3.29
RNF4-209ENST00000507784 ABCC9O60706 1549 aa34.13■■■■□ 3.05
RNF4-209ENST00000507784 ZCCHC6Q5VYS8 1495 aaKnown RBP33.88■■■■□ 3.01
RNF4-209ENST00000507784 DCAF8L2P0C7V8 631 aa33.77■■■■□ 3
RNF4-209ENST00000507784 DCAF1Q9Y4B6 1507 aa33.44■■■□□ 2.94
RNF4-209ENST00000507784 NACADO15069 1562 aa33.25■■■□□ 2.91
RNF4-209ENST00000507784 MYO15BQ96JP2 1530 aa33.23■■■□□ 2.91
RNF4-209ENST00000507784 RB1CC1Q8TDY2 1594 aa33.12■■■□□ 2.89
RNF4-209ENST00000507784 SHROOM4Q9ULL8 1493 aa32.75■■■□□ 2.83
RNF4-209ENST00000507784 SCRIBQ14160 1630 aa32.68■■■□□ 2.82
RNF4-209ENST00000507784 UNC13AQ9UPW8 1703 aa32.43■■■□□ 2.78
RNF4-209ENST00000507784 PABPN1Q86U42 306 aaKnown RBP eCLIP32.09■■■□□ 2.73
RNF4-209ENST00000507784 BICRAQ9NZM4 1560 aa32.06■■■□□ 2.72
RNF4-209ENST00000507784 CECR2Q9BXF3 1484 aa31.51■■■□□ 2.63
RNF4-209ENST00000507784 BAZ1AQ9NRL2 1556 aaPredicted RBP31.33■■■□□ 2.61
RNF4-209ENST00000507784 SUPT5HO00267 1087 aaKnown RBP31.29■■■□□ 2.6
RNF4-209ENST00000507784 MROH2BQ7Z745 1585 aa31.27■■■□□ 2.6
RNF4-209ENST00000507784 SMARCA4P51532 1647 aa31.26■■■□□ 2.59
RNF4-209ENST00000507784 RSF1Q96T23 1441 aaPredicted RBP31.2■■■□□ 2.59
RNF4-209ENST00000507784 EIF4G1Q04637 1599 aaKnown RBP31.16■■■□□ 2.58
RNF4-209ENST00000507784 WIZO95785 1651 aa31.03■■■□□ 2.56
RNF4-209ENST00000507784 CC2D2AQ9P2K1 1620 aa30.86■■■□□ 2.53
RNF4-209ENST00000507784 SMARCA2P51531 1590 aa30.84■■■□□ 2.53
RNF4-209ENST00000507784 ATAD2BQ9ULI0 1458 aa30.84■■■□□ 2.53
RNF4-209ENST00000507784 PEG3Q9GZU2 1588 aa30.83■■■□□ 2.53
RNF4-209ENST00000507784 BAZ1BQ9UIG0 1483 aaKnown RBP30.69■■■□□ 2.5
RNF4-209ENST00000507784 TOP2AP11388 1531 aaKnown RBP30.67■■■□□ 2.5
RNF4-209ENST00000507784 NCAPD3P42695 1498 aa30.65■■■□□ 2.5
RNF4-209ENST00000507784 HMGXB3Q12766 1538 aa30.57■■■□□ 2.49
RNF4-209ENST00000507784 DNAJC5BQ9UF47 199 aa30.51■■■□□ 2.47
RNF4-209ENST00000507784 CCDC88BA6NC98 1476 aa30.35■■■□□ 2.45
RNF4-209ENST00000507784 CADPSQ9ULU8 1353 aa29.87■■■□□ 2.37
RNF4-209ENST00000507784 CFTRP13569 1480 aa29.83■■■□□ 2.37
RNF4-209ENST00000507784 NESP48681 1621 aa29.78■■■□□ 2.36
RNF4-209ENST00000507784 PRDM2Q13029 1718 aa29.74■■■□□ 2.35
RNF4-209ENST00000507784 LAMC3Q9Y6N6 1575 aa29.74■■■□□ 2.35
RNF4-209ENST00000507784 CHIC1Q5VXU3 224 aa29.63■■■□□ 2.33
RNF4-209ENST00000507784 ABCC8Q09428 1581 aa29.56■■■□□ 2.32
RNF4-209ENST00000507784 FANCD2Q9BXW9 1451 aa29.55■■■□□ 2.32
RNF4-209ENST00000507784 PDS5BQ9NTI5 1447 aa29.54■■■□□ 2.32
RNF4-209ENST00000507784 TRIM41Q8WV44 630 aa29.46■■■□□ 2.31
RNF4-209ENST00000507784 KIF21AQ7Z4S6 1674 aa29.45■■■□□ 2.31
RNF4-209ENST00000507784 CEP164Q9UPV0 1460 aa29.42■■■□□ 2.3
RNF4-209ENST00000507784 WRNQ14191 1432 aaPredicted RBP eCLIP29.42■■■□□ 2.3
RNF4-209ENST00000507784 ERCC6Q03468 1493 aa29.34■■■□□ 2.29
RNF4-209ENST00000507784 SYNJ1O43426 1573 aa29.3■■■□□ 2.28
RNF4-209ENST00000507784 CUX1P39880 1505 aa29.27■■■□□ 2.28
RNF4-209ENST00000507784 TOP2BQ02880 1626 aa29.23■■■□□ 2.27
RNF4-209ENST00000507784 BIVM-ERCC5R4GMW8 1640 aa29.23■■■□□ 2.27
RNF4-209ENST00000507784 DNMBPQ6XZF7 1577 aa29.19■■■□□ 2.26
RNF4-209ENST00000507784 MRC2Q9UBG0 1479 aa29.18■■■□□ 2.26
RNF4-209ENST00000507784 URB2Q14146 1524 aaKnown RBP29.18■■■□□ 2.26
RNF4-209ENST00000507784 TOPBP1Q92547 1522 aa29.16■■■□□ 2.26
RNF4-209ENST00000507784 FGD5Q6ZNL6 1462 aa29.05■■■□□ 2.24
RNF4-209ENST00000507784 THOC2Q8NI27 1593 aaKnown RBP29.05■■■□□ 2.24
RNF4-209ENST00000507784 WDR62O43379 1518 aa29.01■■■□□ 2.23
RNF4-209ENST00000507784 POLA1P09884 1462 aaPredicted RBP28.96■■■□□ 2.23
RNF4-209ENST00000507784 FAM9AQ8IZU1 332 aaPredicted RBP28.93■■■□□ 2.22
RNF4-209ENST00000507784 SOGA1O94964 1423 aa28.92■■■□□ 2.22
RNF4-209ENST00000507784 RAD54L2Q9Y4B4 1467 aa28.9■■■□□ 2.22
RNF4-209ENST00000507784 RUSC2Q8N2Y8 1516 aa28.82■■■□□ 2.2
RNF4-209ENST00000507784 CUX2O14529 1486 aa28.78■■■□□ 2.2
RNF4-209ENST00000507784 ABCA10Q8WWZ4 1543 aa28.75■■■□□ 2.19
RNF4-209ENST00000507784 IFT140Q96RY7 1462 aa28.75■■■□□ 2.19
RNF4-209ENST00000507784 TARBP1Q13395 1621 aaKnown RBP28.75■■■□□ 2.19
RNF4-209ENST00000507784 EEA1Q15075 1411 aa28.74■■■□□ 2.19
RNF4-209ENST00000507784 KIF27Q86VH2 1401 aa28.74■■■□□ 2.19
RNF4-209ENST00000507784 WDR97A6NE52 1622 aa28.72■■■□□ 2.19
RNF4-209ENST00000507784 CSRNP3Q8WYN3 585 aa28.67■■■□□ 2.18
RNF4-209ENST00000507784 TDRD9Q8NDG6 1382 aaKnown RBP28.66■■■□□ 2.18
RNF4-209ENST00000507784 EHMT2Q96KQ7 1210 aa28.58■■■□□ 2.17
RNF4-209ENST00000507784 ZNF608Q9ULD9 1512 aaPredicted RBP28.58■■■□□ 2.17
RNF4-209ENST00000507784 AQRO60306 1485 aaKnown RBP eCLIP28.57■■■□□ 2.168e-8■■■■■ 33.9
RNF4-209ENST00000507784 GAPVD1Q14C86 1478 aa28.57■■■□□ 2.16
RNF4-209ENST00000507784 ABCA5Q8WWZ7 1642 aa28.57■■■□□ 2.16
RNF4-209ENST00000507784 LOC105371045A0A1W2PR82 267 aa28.51■■■□□ 2.15
RNF4-209ENST00000507784 IGF1RP08069 1367 aa28.5■■■□□ 2.15
RNF4-209ENST00000507784 PBRM1Q86U86 1689 aa28.49■■■□□ 2.15
RNF4-209ENST00000507784 EIF4G3O43432 1585 aaKnown RBP28.49■■■□□ 2.15
RNF4-209ENST00000507784 ERICH3Q5RHP9 1530 aa28.43■■■□□ 2.14
RNF4-209ENST00000507784 GRIN2BQ13224 1484 aa28.42■■■□□ 2.14
RNF4-209ENST00000507784 CARMIL1Q5VZK9 1371 aa28.39■■■□□ 2.14
RNF4-209ENST00000507784 KIF21BO75037 1637 aa28.39■■■□□ 2.13
RNF4-209ENST00000507784 CUL7Q14999 1698 aa28.37■■■□□ 2.13
RNF4-209ENST00000507784 PRXQ9BXM0 1461 aa28.35■■■□□ 2.13
RNF4-209ENST00000507784 GOLGA3Q08378 1498 aa28.34■■■□□ 2.13
RNF4-209ENST00000507784 UBTFP17480 764 aaKnown RBP28.31■■■□□ 2.12
RNF4-209ENST00000507784 RAPGEF2Q9Y4G8 1499 aa28.31■■■□□ 2.12
RNF4-209ENST00000507784 SNAPC4Q5SXM2 1469 aa28.3■■■□□ 2.12
RNF4-209ENST00000507784 ADAMTS12P58397 1594 aa28.25■■■□□ 2.11
RNF4-209ENST00000507784 FHAD1B1AJZ9 1412 aa28.25■■■□□ 2.11
RNF4-209ENST00000507784 MAGI1Q96QZ7 1491 aaPredicted RBP28.22■■■□□ 2.11
RNF4-209ENST00000507784 FBLN2P98095 1184 aa28.17■■■□□ 2.1
RNF4-209ENST00000507784 CHMP7Q8WUX9 453 aaPredicted RBP28.16■■■□□ 2.1
RNF4-209ENST00000507784 TNIKQ9UKE5 1360 aa28.13■■■□□ 2.09
RNF4-209ENST00000507784 SYNJ2O15056 1496 aa28.12■■■□□ 2.09
RNF4-209ENST00000507784 GRIN2AQ12879 1464 aa28.06■■■□□ 2.08
RNF4-209ENST00000507784 RANGAP1P46060 587 aaPredicted RBP28.04■■■□□ 2.08
RNF4-209ENST00000507784 CHD1O14646 1710 aa28.03■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms