RNA–Protein interactions for RNA: ENST00000507751.5

CCHCR1-223, Transcript of coiled-coil alpha-helical rod protein 1, human

TSL 2

Gene CCHCR1, Length 588 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCHCR1-223	ENST00000507751	NISCH	Q9Y2I1	1504 aa		45.85	■■■■■ 4.93
CCHCR1-223	ENST00000507751	CCDC180	Q9P1Z9	1646 aa		41.04	■■■■■ 4.16
CCHCR1-223	ENST00000507751	ABCC9	O60706	1549 aa		40.97	■■■■■ 4.15
CCHCR1-223	ENST00000507751	RB1CC1	Q8TDY2	1594 aa		39.04	■■■■□ 3.84
CCHCR1-223	ENST00000507751	NACAD	O15069	1562 aa		38.82	■■■■□ 3.8
CCHCR1-223	ENST00000507751	DCAF8L2	P0C7V8	631 aa		38.73	■■■■□ 3.79
CCHCR1-223	ENST00000507751	DNAJC5B	Q9UF47	199 aa		38.39	■■■■□ 3.74
CCHCR1-223	ENST00000507751	MYO15B	Q96JP2	1530 aa		38.33	■■■■□ 3.73
CCHCR1-223	ENST00000507751	PABPN1	Q86U42	306 aa	Known RBP eCLIP	38.22	■■■■□ 3.71
CCHCR1-223	ENST00000507751	UNC13A	Q9UPW8	1703 aa		38.12	■■■■□ 3.69
CCHCR1-223	ENST00000507751	ZCCHC6	Q5VYS8	1495 aa	Known RBP	38	■■■■□ 3.67
CCHCR1-223	ENST00000507751	BICRA	Q9NZM4	1560 aa		37.89	■■■■□ 3.66
CCHCR1-223	ENST00000507751	DCAF1	Q9Y4B6	1507 aa		37.88	■■■■□ 3.65
CCHCR1-223	ENST00000507751	SCRIB	Q14160	1630 aa		37.41	■■■■□ 3.58
CCHCR1-223	ENST00000507751	SHROOM4	Q9ULL8	1493 aa		37.39	■■■■□ 3.58
CCHCR1-223	ENST00000507751	CC2D2A	Q9P2K1	1620 aa		36.99	■■■■□ 3.51
CCHCR1-223	ENST00000507751	EIF4G1	Q04637	1599 aa	Known RBP	36.94	■■■■□ 3.5
CCHCR1-223	ENST00000507751	CECR2	Q9BXF3	1484 aa		36.89	■■■■□ 3.5
CCHCR1-223	ENST00000507751	NCAPD3	P42695	1498 aa		35.86	■■■■□ 3.33
CCHCR1-223	ENST00000507751	ATAD2B	Q9ULI0	1458 aa		35.75	■■■■□ 3.31
CCHCR1-223	ENST00000507751	SMARCA4	P51532	1647 aa		35.72	■■■■□ 3.31
CCHCR1-223	ENST00000507751	SMARCA2	P51531	1590 aa		35.64	■■■■□ 3.3
CCHCR1-223	ENST00000507751	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	35.57	■■■■□ 3.28
CCHCR1-223	ENST00000507751	HMGXB3	Q12766	1538 aa		35.55	■■■■□ 3.28
CCHCR1-223	ENST00000507751	BAZ1B	Q9UIG0	1483 aa	Known RBP	35.4	■■■■□ 3.26
CCHCR1-223	ENST00000507751	PEG3	Q9GZU2	1588 aa		35.37	■■■■□ 3.25
CCHCR1-223	ENST00000507751	ERCC6	Q03468	1493 aa		35.35	■■■■□ 3.25
CCHCR1-223	ENST00000507751	MROH2B	Q7Z745	1585 aa		35.33	■■■■□ 3.25
CCHCR1-223	ENST00000507751	CUX2	O14529	1486 aa		35.25	■■■■□ 3.23
CCHCR1-223	ENST00000507751	NES	P48681	1621 aa		35.23	■■■■□ 3.23
CCHCR1-223	ENST00000507751	DNAJC5	Q9H3Z4	198 aa		35.17	■■■■□ 3.22
CCHCR1-223	ENST00000507751	LAMC3	Q9Y6N6	1575 aa		34.99	■■■■□ 3.19
CCHCR1-223	ENST00000507751	WIZ	O95785	1651 aa		34.9	■■■■□ 3.18
CCHCR1-223	ENST00000507751	PDS5B	Q9NTI5	1447 aa		34.83	■■■■□ 3.17
CCHCR1-223	ENST00000507751	THOC2	Q8NI27	1593 aa	Known RBP	34.79	■■■■□ 3.16
CCHCR1-223	ENST00000507751	CADPS	Q9ULU8	1353 aa		34.79	■■■■□ 3.16
CCHCR1-223	ENST00000507751	KIF21A	Q7Z4S6	1674 aa		34.73	■■■■□ 3.15
CCHCR1-223	ENST00000507751	RSF1	Q96T23	1441 aa	Predicted RBP	34.67	■■■■□ 3.14
CCHCR1-223	ENST00000507751	MRC2	Q9UBG0	1479 aa		34.48	■■■■□ 3.11
CCHCR1-223	ENST00000507751	TOP2A	P11388	1531 aa	Known RBP	34.45	■■■■□ 3.11
CCHCR1-223	ENST00000507751	CFTR	P13569	1480 aa		34.39	■■■■□ 3.1
CCHCR1-223	ENST00000507751	WDR62	O43379	1518 aa		34.37	■■■■□ 3.09
CCHCR1-223	ENST00000507751	CEP164	Q9UPV0	1460 aa		34.37	■■■■□ 3.09
CCHCR1-223	ENST00000507751	FANCD2	Q9BXW9	1451 aa		34.36	■■■■□ 3.09
CCHCR1-223	ENST00000507751	CCDC88B	A6NC98	1476 aa		34.12	■■■■□ 3.05
CCHCR1-223	ENST00000507751	URB2	Q14146	1524 aa	Known RBP	34.06	■■■■□ 3.04
CCHCR1-223	ENST00000507751	PRDM2	Q13029	1718 aa		33.99	■■■■□ 3.03
CCHCR1-223	ENST00000507751	OSCAR	Q8IYS5	282 aa		33.75	■■■□□ 2.99
CCHCR1-223	ENST00000507751	TOPBP1	Q92547	1522 aa		33.72	■■■□□ 2.99
CCHCR1-223	ENST00000507751	IFT140	Q96RY7	1462 aa		33.69	■■■□□ 2.98
CCHCR1-223	ENST00000507751	ABCC8	Q09428	1581 aa		33.68	■■■□□ 2.98
CCHCR1-223	ENST00000507751	TRIM41	Q8WV44	630 aa		33.65	■■■□□ 2.98
CCHCR1-223	ENST00000507751	ZNF608	Q9ULD9	1512 aa	Predicted RBP	33.62	■■■□□ 2.97
CCHCR1-223	ENST00000507751	DNMBP	Q6XZF7	1577 aa		33.59	■■■□□ 2.97
CCHCR1-223	ENST00000507751	TARBP1	Q13395	1621 aa	Known RBP	33.39	■■■□□ 2.94
CCHCR1-223	ENST00000507751	EIF4G3	O43432	1585 aa	Known RBP	33.39	■■■□□ 2.94
CCHCR1-223	ENST00000507751	POLA1	P09884	1462 aa	Predicted RBP	33.37	■■■□□ 2.93
CCHCR1-223	ENST00000507751	AQR	O60306	1485 aa	Known RBP eCLIP	33.37	■■■□□ 2.93	5e-15	■■■■■ 50.5
CCHCR1-223	ENST00000507751	SUPT5H	O00267	1087 aa	Known RBP	33.28	■■■□□ 2.92
CCHCR1-223	ENST00000507751	SOGA1	O94964	1423 aa		33.28	■■■□□ 2.92
CCHCR1-223	ENST00000507751	RAD54L2	Q9Y4B4	1467 aa		33.27	■■■□□ 2.92
CCHCR1-223	ENST00000507751	RIMBP3C	A6NJZ7	1639 aa		33.19	■■■□□ 2.9
CCHCR1-223	ENST00000507751	RIMBP3B	A6NNM3	1639 aa		33.19	■■■□□ 2.9
CCHCR1-223	ENST00000507751	RIMBP3	Q9UFD9	1639 aa		33.19	■■■□□ 2.9
CCHCR1-223	ENST00000507751	TDRD9	Q8NDG6	1382 aa	Known RBP	33.19	■■■□□ 2.9
CCHCR1-223	ENST00000507751	FGD5	Q6ZNL6	1462 aa		33.18	■■■□□ 2.9
CCHCR1-223	ENST00000507751	CUX1	P39880	1505 aa		33.18	■■■□□ 2.9
CCHCR1-223	ENST00000507751	FBLN2	P98095	1184 aa		33.15	■■■□□ 2.9
CCHCR1-223	ENST00000507751	CHD1	O14646	1710 aa		33.13	■■■□□ 2.89
CCHCR1-223	ENST00000507751	ARHGEF11	O15085	1522 aa		33.11	■■■□□ 2.89
CCHCR1-223	ENST00000507751	WDR97	A6NE52	1622 aa		33.06	■■■□□ 2.88
CCHCR1-223	ENST00000507751	SNAPC4	Q5SXM2	1469 aa		32.99	■■■□□ 2.87
CCHCR1-223	ENST00000507751	GRIN2B	Q13224	1484 aa		32.94	■■■□□ 2.86
CCHCR1-223	ENST00000507751	CYB5RL	Q6IPT4	315 aa		32.94	■■■□□ 2.86
CCHCR1-223	ENST00000507751	CHMP7	Q8WUX9	453 aa	Predicted RBP	32.94	■■■□□ 2.86
CCHCR1-223	ENST00000507751	MAGI1	Q96QZ7	1491 aa	Predicted RBP	32.92	■■■□□ 2.86
CCHCR1-223	ENST00000507751	GAPVD1	Q14C86	1478 aa		32.85	■■■□□ 2.85
CCHCR1-223	ENST00000507751	ABCA10	Q8WWZ4	1543 aa		32.83	■■■□□ 2.85
CCHCR1-223	ENST00000507751	SYNJ2	O15056	1496 aa		32.81	■■■□□ 2.84
CCHCR1-223	ENST00000507751	ARAP1	Q96P48	1450 aa		32.8	■■■□□ 2.84
CCHCR1-223	ENST00000507751	CLASP1	Q7Z460	1538 aa		32.77	■■■□□ 2.84
CCHCR1-223	ENST00000507751	SYNJ1	O43426	1573 aa		32.77	■■■□□ 2.84
CCHCR1-223	ENST00000507751	PBRM1	Q86U86	1689 aa		32.75	■■■□□ 2.83
CCHCR1-223	ENST00000507751	WRN	Q14191	1432 aa	Predicted RBP eCLIP	32.75	■■■□□ 2.83
CCHCR1-223	ENST00000507751	ABCA5	Q8WWZ7	1642 aa		32.73	■■■□□ 2.83
CCHCR1-223	ENST00000507751	TOP2B	Q02880	1626 aa		32.67	■■■□□ 2.82
CCHCR1-223	ENST00000507751	BIVM-ERCC5	R4GMW8	1640 aa		32.66	■■■□□ 2.82
CCHCR1-223	ENST00000507751	TRH	P20396	242 aa	Predicted RBP	32.53	■■■□□ 2.8
CCHCR1-223	ENST00000507751	GRIN2A	Q12879	1464 aa		32.5	■■■□□ 2.79
CCHCR1-223	ENST00000507751	ADAMTS12	P58397	1594 aa		32.47	■■■□□ 2.79
CCHCR1-223	ENST00000507751	FHAD1	B1AJZ9	1412 aa		32.44	■■■□□ 2.78
CCHCR1-223	ENST00000507751	ERICH3	Q5RHP9	1530 aa		32.41	■■■□□ 2.78
CCHCR1-223	ENST00000507751	NUP160	Q12769	1436 aa		32.4	■■■□□ 2.78
CCHCR1-223	ENST00000507751	CEP170	Q5SW79	1584 aa		32.36	■■■□□ 2.77
CCHCR1-223	ENST00000507751	ERCC6L2	Q5T890	1561 aa		32.28	■■■□□ 2.76
CCHCR1-223	ENST00000507751	SHROOM2	Q13796	1616 aa		32.22	■■■□□ 2.75
CCHCR1-223	ENST00000507751	JPH4	Q96JJ6	628 aa		32.15	■■■□□ 2.74
CCHCR1-223	ENST00000507751	PRG4	Q92954	1404 aa	Predicted RBP	32.1	■■■□□ 2.73
CCHCR1-223	ENST00000507751	IGF1R	P08069	1367 aa		32.09	■■■□□ 2.73
CCHCR1-223	ENST00000507751	KIF27	Q86VH2	1401 aa		32.08	■■■□□ 2.73

Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms