RNA–Protein interactions for RNA: ENST00000507650.1

HOXC4-203, Transcript of homeobox C4, humanhuman

TSL 3

Gene HOXC4, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4-203ENST00000507650 NISCHQ9Y2I1 1504 aa40.38■■■■■ 4.06
HOXC4-203ENST00000507650 CCDC180Q9P1Z9 1646 aa36.16■■■■□ 3.38
HOXC4-203ENST00000507650 ABCC9O60706 1549 aa35.78■■■■□ 3.32
HOXC4-203ENST00000507650 RB1CC1Q8TDY2 1594 aa34.17■■■■□ 3.06
HOXC4-203ENST00000507650 NACADO15069 1562 aa34.02■■■■□ 3.04
HOXC4-203ENST00000507650 DCAF8L2P0C7V8 631 aa33.7■■■□□ 2.99
HOXC4-203ENST00000507650 UNC13AQ9UPW8 1703 aa33.68■■■□□ 2.98
HOXC4-203ENST00000507650 MYO15BQ96JP2 1530 aa33.65■■■□□ 2.98
HOXC4-203ENST00000507650 ZCCHC6Q5VYS8 1495 aaKnown RBP33.56■■■□□ 2.96
HOXC4-203ENST00000507650 DCAF1Q9Y4B6 1507 aa33.36■■■□□ 2.93
HOXC4-203ENST00000507650 BICRAQ9NZM4 1560 aa33.34■■■□□ 2.93
HOXC4-203ENST00000507650 DNAJC5BQ9UF47 199 aa33.33■■■□□ 2.93
HOXC4-203ENST00000507650 PABPN1Q86U42 306 aaKnown RBP eCLIP33.29■■■□□ 2.92
HOXC4-203ENST00000507650 SCRIBQ14160 1630 aa32.96■■■□□ 2.87
HOXC4-203ENST00000507650 SHROOM4Q9ULL8 1493 aa32.72■■■□□ 2.83
HOXC4-203ENST00000507650 CC2D2AQ9P2K1 1620 aa32.4■■■□□ 2.78
HOXC4-203ENST00000507650 EIF4G1Q04637 1599 aaKnown RBP32.39■■■□□ 2.78
HOXC4-203ENST00000507650 CECR2Q9BXF3 1484 aa32.16■■■□□ 2.74
HOXC4-203ENST00000507650 SMARCA4P51532 1647 aa31.48■■■□□ 2.63
HOXC4-203ENST00000507650 NCAPD3P42695 1498 aa31.39■■■□□ 2.62
HOXC4-203ENST00000507650 ATAD2BQ9ULI0 1458 aa31.37■■■□□ 2.61
HOXC4-203ENST00000507650 BAZ1AQ9NRL2 1556 aaPredicted RBP31.28■■■□□ 2.6
HOXC4-203ENST00000507650 SMARCA2P51531 1590 aa31.26■■■□□ 2.59
HOXC4-203ENST00000507650 HMGXB3Q12766 1538 aa31.24■■■□□ 2.59
HOXC4-203ENST00000507650 PEG3Q9GZU2 1588 aa31.17■■■□□ 2.58
HOXC4-203ENST00000507650 MROH2BQ7Z745 1585 aa31.17■■■□□ 2.58
HOXC4-203ENST00000507650 BAZ1BQ9UIG0 1483 aaKnown RBP31.03■■■□□ 2.56
HOXC4-203ENST00000507650 NESP48681 1621 aa30.9■■■□□ 2.54
HOXC4-203ENST00000507650 WIZO95785 1651 aa30.85■■■□□ 2.53
HOXC4-203ENST00000507650 ERCC6Q03468 1493 aa30.76■■■□□ 2.51
HOXC4-203ENST00000507650 LAMC3Q9Y6N6 1575 aa30.66■■■□□ 2.5
HOXC4-203ENST00000507650 CUX2O14529 1486 aa30.65■■■□□ 2.5
HOXC4-203ENST00000507650 KIF21AQ7Z4S6 1674 aa30.58■■■□□ 2.49
HOXC4-203ENST00000507650 THOC2Q8NI27 1593 aaKnown RBP30.58■■■□□ 2.49
HOXC4-203ENST00000507650 RSF1Q96T23 1441 aaPredicted RBP30.56■■■□□ 2.48
HOXC4-203ENST00000507650 TOP2AP11388 1531 aaKnown RBP30.41■■■□□ 2.46
HOXC4-203ENST00000507650 CADPSQ9ULU8 1353 aa30.4■■■□□ 2.46
HOXC4-203ENST00000507650 PDS5BQ9NTI5 1447 aa30.34■■■□□ 2.45
HOXC4-203ENST00000507650 DNAJC5Q9H3Z4 198 aa30.24■■■□□ 2.43
HOXC4-203ENST00000507650 CFTRP13569 1480 aa30.19■■■□□ 2.42
HOXC4-203ENST00000507650 MRC2Q9UBG0 1479 aa30.16■■■□□ 2.42
HOXC4-203ENST00000507650 WDR62O43379 1518 aa30.15■■■□□ 2.42
HOXC4-203ENST00000507650 FANCD2Q9BXW9 1451 aa30.1■■■□□ 2.41
HOXC4-203ENST00000507650 PRDM2Q13029 1718 aa30.09■■■□□ 2.41
HOXC4-203ENST00000507650 CEP164Q9UPV0 1460 aa30.09■■■□□ 2.41
HOXC4-203ENST00000507650 CCDC88BA6NC98 1476 aa30.04■■■□□ 2.4
HOXC4-203ENST00000507650 URB2Q14146 1524 aaKnown RBP29.92■■■□□ 2.38
HOXC4-203ENST00000507650 TOPBP1Q92547 1522 aa29.61■■■□□ 2.33
HOXC4-203ENST00000507650 DNMBPQ6XZF7 1577 aa29.53■■■□□ 2.32
HOXC4-203ENST00000507650 ZNF608Q9ULD9 1512 aaPredicted RBP29.5■■■□□ 2.31
HOXC4-203ENST00000507650 IFT140Q96RY7 1462 aa29.46■■■□□ 2.31
HOXC4-203ENST00000507650 ABCC8Q09428 1581 aa29.43■■■□□ 2.3
HOXC4-203ENST00000507650 TARBP1Q13395 1621 aaKnown RBP29.41■■■□□ 2.3
HOXC4-203ENST00000507650 EIF4G3O43432 1585 aaKnown RBP29.38■■■□□ 2.29
HOXC4-203ENST00000507650 POLA1P09884 1462 aaPredicted RBP29.33■■■□□ 2.29
HOXC4-203ENST00000507650 SUPT5HO00267 1087 aaKnown RBP29.3■■■□□ 2.28
HOXC4-203ENST00000507650 CUX1P39880 1505 aa29.26■■■□□ 2.27
HOXC4-203ENST00000507650 RAD54L2Q9Y4B4 1467 aa29.22■■■□□ 2.27
HOXC4-203ENST00000507650 AQRO60306 1485 aaKnown RBP eCLIP29.2■■■□□ 2.26
HOXC4-203ENST00000507650 FGD5Q6ZNL6 1462 aa29.18■■■□□ 2.26
HOXC4-203ENST00000507650 OSCARQ8IYS5 282 aa29.18■■■□□ 2.26
HOXC4-203ENST00000507650 CHD1O14646 1710 aa29.16■■■□□ 2.26
HOXC4-203ENST00000507650 WDR97A6NE52 1622 aa29.12■■■□□ 2.25
HOXC4-203ENST00000507650 SOGA1O94964 1423 aa29.1■■■□□ 2.25
HOXC4-203ENST00000507650 TDRD9Q8NDG6 1382 aaKnown RBP29.03■■■□□ 2.24
HOXC4-203ENST00000507650 RIMBP3CA6NJZ7 1639 aa29.02■■■□□ 2.24
HOXC4-203ENST00000507650 RIMBP3BA6NNM3 1639 aa29.02■■■□□ 2.24
HOXC4-203ENST00000507650 RIMBP3Q9UFD9 1639 aa29.02■■■□□ 2.24
HOXC4-203ENST00000507650 TRIM41Q8WV44 630 aa29■■■□□ 2.23
HOXC4-203ENST00000507650 PBRM1Q86U86 1689 aa28.93■■■□□ 2.22
HOXC4-203ENST00000507650 SNAPC4Q5SXM2 1469 aa28.93■■■□□ 2.22
HOXC4-203ENST00000507650 BIVM-ERCC5R4GMW8 1640 aa28.91■■■□□ 2.22
HOXC4-203ENST00000507650 ARHGEF11O15085 1522 aa28.9■■■□□ 2.22
HOXC4-203ENST00000507650 SYNJ1O43426 1573 aa28.89■■■□□ 2.22
HOXC4-203ENST00000507650 ABCA5Q8WWZ7 1642 aa28.89■■■□□ 2.22
HOXC4-203ENST00000507650 TOP2BQ02880 1626 aa28.86■■■□□ 2.21
HOXC4-203ENST00000507650 ABCA10Q8WWZ4 1543 aa28.85■■■□□ 2.21
HOXC4-203ENST00000507650 GRIN2BQ13224 1484 aa28.84■■■□□ 2.21
HOXC4-203ENST00000507650 MAGI1Q96QZ7 1491 aaPredicted RBP28.82■■■□□ 2.2
HOXC4-203ENST00000507650 GAPVD1Q14C86 1478 aa28.78■■■□□ 2.2
HOXC4-203ENST00000507650 FBLN2P98095 1184 aa28.78■■■□□ 2.2
HOXC4-203ENST00000507650 CLASP1Q7Z460 1538 aa28.77■■■□□ 2.2
HOXC4-203ENST00000507650 WRNQ14191 1432 aaPredicted RBP eCLIP28.77■■■□□ 2.2
HOXC4-203ENST00000507650 SYNJ2O15056 1496 aa28.72■■■□□ 2.19
HOXC4-203ENST00000507650 ARAP1Q96P48 1450 aa28.66■■■□□ 2.18
HOXC4-203ENST00000507650 ADAMTS12P58397 1594 aa28.62■■■□□ 2.17
HOXC4-203ENST00000507650 CHMP7Q8WUX9 453 aaPredicted RBP28.61■■■□□ 2.17
HOXC4-203ENST00000507650 CYB5RLQ6IPT4 315 aa28.52■■■□□ 2.16
HOXC4-203ENST00000507650 GRIN2AQ12879 1464 aa28.51■■■□□ 2.15
HOXC4-203ENST00000507650 CEP170Q5SW79 1584 aa28.49■■■□□ 2.15
HOXC4-203ENST00000507650 ERICH3Q5RHP9 1530 aa28.48■■■□□ 2.15
HOXC4-203ENST00000507650 NUP160Q12769 1436 aa28.42■■■□□ 2.14
HOXC4-203ENST00000507650 FHAD1B1AJZ9 1412 aa28.41■■■□□ 2.14
HOXC4-203ENST00000507650 ERCC6L2Q5T890 1561 aa28.41■■■□□ 2.14
HOXC4-203ENST00000507650 SHROOM2Q13796 1616 aa28.36■■■□□ 2.13
HOXC4-203ENST00000507650 RUSC2Q8N2Y8 1516 aa28.23■■■□□ 2.11
HOXC4-203ENST00000507650 CUL7Q14999 1698 aa28.16■■■□□ 2.1
HOXC4-203ENST00000507650 IGF1RP08069 1367 aa28.16■■■□□ 2.1
HOXC4-203ENST00000507650 KIF27Q86VH2 1401 aa28.15■■■□□ 2.1
HOXC4-203ENST00000507650 PRG4Q92954 1404 aaPredicted RBP28.05■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms