RNA–Protein interactions for RNA: ENST00000507533.1

DDR1-260, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

TSL 2

Gene DDR1, Length 545 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-260ENST00000507533 NISCHQ9Y2I1 1504 aa35.57■■■■□ 3.28
DDR1-260ENST00000507533 ABCC9O60706 1549 aa32.83■■■□□ 2.85
DDR1-260ENST00000507533 CCDC180Q9P1Z9 1646 aa32.1■■■□□ 2.73
DDR1-260ENST00000507533 DNAJC5BQ9UF47 199 aa31.41■■■□□ 2.62
DDR1-260ENST00000507533 RB1CC1Q8TDY2 1594 aa30.92■■■□□ 2.54
DDR1-260ENST00000507533 NACADO15069 1562 aa30.56■■■□□ 2.48
DDR1-260ENST00000507533 PABPN1Q86U42 306 aaKnown RBP eCLIP30.53■■■□□ 2.48
DDR1-260ENST00000507533 DCAF8L2P0C7V8 631 aa30.42■■■□□ 2.46
DDR1-260ENST00000507533 UNC13AQ9UPW8 1703 aa30.11■■■□□ 2.41
DDR1-260ENST00000507533 BICRAQ9NZM4 1560 aa30.03■■■□□ 2.4
DDR1-260ENST00000507533 MYO15BQ96JP2 1530 aa29.92■■■□□ 2.38
DDR1-260ENST00000507533 CECR2Q9BXF3 1484 aa29.64■■■□□ 2.34
DDR1-260ENST00000507533 CC2D2AQ9P2K1 1620 aa29.57■■■□□ 2.32
DDR1-260ENST00000507533 SHROOM4Q9ULL8 1493 aa29.55■■■□□ 2.32
DDR1-260ENST00000507533 EIF4G1Q04637 1599 aaKnown RBP29.36■■■□□ 2.29
DDR1-260ENST00000507533 ZCCHC6Q5VYS8 1495 aaKnown RBP29.32■■■□□ 2.28
DDR1-260ENST00000507533 DCAF1Q9Y4B6 1507 aa29.31■■■□□ 2.28
DDR1-260ENST00000507533 DNAJC5Q9H3Z4 198 aa29.29■■■□□ 2.28
DDR1-260ENST00000507533 SCRIBQ14160 1630 aa29.27■■■□□ 2.28
DDR1-260ENST00000507533 CUX2O14529 1486 aa28.53■■■□□ 2.16
DDR1-260ENST00000507533 ERCC6Q03468 1493 aa28.4■■■□□ 2.14
DDR1-260ENST00000507533 NCAPD3P42695 1498 aa28.26■■■□□ 2.11
DDR1-260ENST00000507533 ATAD2BQ9ULI0 1458 aa28.08■■■□□ 2.09
DDR1-260ENST00000507533 NESP48681 1621 aa28.01■■■□□ 2.07
DDR1-260ENST00000507533 SMARCA2P51531 1590 aa27.94■■■□□ 2.06
DDR1-260ENST00000507533 HMGXB3Q12766 1538 aa27.93■■■□□ 2.06
DDR1-260ENST00000507533 SMARCA4P51532 1647 aa27.85■■■□□ 2.05
DDR1-260ENST00000507533 THOC2Q8NI27 1593 aaKnown RBP27.79■■■□□ 2.04
DDR1-260ENST00000507533 TRIM41Q8WV44 630 aa27.78■■■□□ 2.04
DDR1-260ENST00000507533 BAZ1BQ9UIG0 1483 aaKnown RBP27.77■■■□□ 2.04
DDR1-260ENST00000507533 LAMC3Q9Y6N6 1575 aa27.67■■■□□ 2.02
DDR1-260ENST00000507533 BAZ1AQ9NRL2 1556 aaPredicted RBP27.64■■■□□ 2.01
DDR1-260ENST00000507533 PDS5BQ9NTI5 1447 aa27.6■■■□□ 2.01
DDR1-260ENST00000507533 PEG3Q9GZU2 1588 aa27.56■■■□□ 2
DDR1-260ENST00000507533 KIF21AQ7Z4S6 1674 aa27.54■■■□□ 2
DDR1-260ENST00000507533 MROH2BQ7Z745 1585 aa27.4■■□□□ 1.98
DDR1-260ENST00000507533 CADPSQ9ULU8 1353 aa27.39■■□□□ 1.98
DDR1-260ENST00000507533 MRC2Q9UBG0 1479 aa27.38■■□□□ 1.97
DDR1-260ENST00000507533 WDR62O43379 1518 aa27.3■■□□□ 1.96
DDR1-260ENST00000507533 OSCARQ8IYS5 282 aa27.2■■□□□ 1.94
DDR1-260ENST00000507533 CEP164Q9UPV0 1460 aa27.13■■□□□ 1.93
DDR1-260ENST00000507533 FANCD2Q9BXW9 1451 aa27.06■■□□□ 1.92
DDR1-260ENST00000507533 WIZO95785 1651 aa27.01■■□□□ 1.92
DDR1-260ENST00000507533 CFTRP13569 1480 aa26.92■■□□□ 1.9
DDR1-260ENST00000507533 URB2Q14146 1524 aaKnown RBP26.87■■□□□ 1.89
DDR1-260ENST00000507533 RIMBP3CA6NJZ7 1639 aa26.81■■□□□ 1.88
DDR1-260ENST00000507533 RIMBP3BA6NNM3 1639 aa26.81■■□□□ 1.88
DDR1-260ENST00000507533 RIMBP3Q9UFD9 1639 aa26.81■■□□□ 1.88
DDR1-260ENST00000507533 ARHGEF11O15085 1522 aa26.68■■□□□ 1.86
DDR1-260ENST00000507533 ZNF608Q9ULD9 1512 aaPredicted RBP26.65■■□□□ 1.86
DDR1-260ENST00000507533 TOP2AP11388 1531 aaKnown RBP26.64■■□□□ 1.85
DDR1-260ENST00000507533 RSF1Q96T23 1441 aaPredicted RBP26.64■■□□□ 1.85
DDR1-260ENST00000507533 IFT140Q96RY7 1462 aa26.62■■□□□ 1.85
DDR1-260ENST00000507533 CYB5RLQ6IPT4 315 aa26.62■■□□□ 1.85
DDR1-260ENST00000507533 TRHP20396 242 aaPredicted RBP26.54■■□□□ 1.84
DDR1-260ENST00000507533 TOPBP1Q92547 1522 aa26.46■■□□□ 1.83
DDR1-260ENST00000507533 PRDM2Q13029 1718 aa26.44■■□□□ 1.82
DDR1-260ENST00000507533 EIF4G3O43432 1585 aaKnown RBP26.41■■□□□ 1.82
DDR1-260ENST00000507533 CCDC88BA6NC98 1476 aa26.39■■□□□ 1.82
DDR1-260ENST00000507533 ARAP1Q96P48 1450 aa26.39■■□□□ 1.82
DDR1-260ENST00000507533 ABCC8Q09428 1581 aa26.37■■□□□ 1.81
DDR1-260ENST00000507533 FBLN2P98095 1184 aa26.36■■□□□ 1.81
DDR1-260ENST00000507533 AQRO60306 1485 aaKnown RBP eCLIP26.36■■□□□ 1.811e-7■■■■■ 31.3
DDR1-260ENST00000507533 CHD1O14646 1710 aa26.3■■□□□ 1.8
DDR1-260ENST00000507533 DNMBPQ6XZF7 1577 aa26.29■■□□□ 1.8
DDR1-260ENST00000507533 TARBP1Q13395 1621 aaKnown RBP26.24■■□□□ 1.79
DDR1-260ENST00000507533 AEBP2Q6ZN18 517 aaPredicted RBP26.23■■□□□ 1.79
DDR1-260ENST00000507533 POLA1P09884 1462 aaPredicted RBP26.16■■□□□ 1.78
DDR1-260ENST00000507533 TDRD9Q8NDG6 1382 aaKnown RBP26.11■■□□□ 1.77
DDR1-260ENST00000507533 RAD54L2Q9Y4B4 1467 aa26.11■■□□□ 1.77
DDR1-260ENST00000507533 SOGA1O94964 1423 aa26.07■■□□□ 1.76
DDR1-260ENST00000507533 CHMP7Q8WUX9 453 aaPredicted RBP26.06■■□□□ 1.76
DDR1-260ENST00000507533 SNAPC4Q5SXM2 1469 aa26.04■■□□□ 1.76
DDR1-260ENST00000507533 CLASP1Q7Z460 1538 aa26.04■■□□□ 1.76
DDR1-260ENST00000507533 SYNJ1O43426 1573 aa25.97■■□□□ 1.75
DDR1-260ENST00000507533 MAGI1Q96QZ7 1491 aaPredicted RBP25.93■■□□□ 1.74
DDR1-260ENST00000507533 WDR97A6NE52 1622 aa25.91■■□□□ 1.74
DDR1-260ENST00000507533 FGD5Q6ZNL6 1462 aa25.91■■□□□ 1.74
DDR1-260ENST00000507533 GRIN2BQ13224 1484 aa25.89■■□□□ 1.73
DDR1-260ENST00000507533 SYNJ2O15056 1496 aa25.86■■□□□ 1.73
DDR1-260ENST00000507533 GAPVD1Q14C86 1478 aa25.85■■□□□ 1.73
DDR1-260ENST00000507533 CUX1P39880 1505 aa25.78■■□□□ 1.72
DDR1-260ENST00000507533 PBRM1Q86U86 1689 aa25.64■■□□□ 1.69
DDR1-260ENST00000507533 ERCC6L2Q5T890 1561 aa25.61■■□□□ 1.69
DDR1-260ENST00000507533 ABCA10Q8WWZ4 1543 aa25.58■■□□□ 1.68
DDR1-260ENST00000507533 ABCA5Q8WWZ7 1642 aa25.54■■□□□ 1.68
DDR1-260ENST00000507533 GRIN2AQ12879 1464 aa25.53■■□□□ 1.68
DDR1-260ENST00000507533 CEP170Q5SW79 1584 aa25.5■■□□□ 1.67
DDR1-260ENST00000507533 NUP160Q12769 1436 aa25.48■■□□□ 1.67
DDR1-260ENST00000507533 ADAMTS12P58397 1594 aa25.4■■□□□ 1.66
DDR1-260ENST00000507533 WRNQ14191 1432 aaPredicted RBP eCLIP25.38■■□□□ 1.65
DDR1-260ENST00000507533 SHROOM2Q13796 1616 aa25.38■■□□□ 1.65
DDR1-260ENST00000507533 FHAD1B1AJZ9 1412 aa25.37■■□□□ 1.65
DDR1-260ENST00000507533 KIF13AQ9H1H9 1805 aa25.35■■□□□ 1.65
DDR1-260ENST00000507533 FAM69CQ0P6D2 419 aa25.33■■□□□ 1.65
DDR1-260ENST00000507533 PRG4Q92954 1404 aaPredicted RBP25.32■■□□□ 1.64
DDR1-260ENST00000507533 JPH4Q96JJ6 628 aa25.29■■□□□ 1.64
DDR1-260ENST00000507533 NPM1P06748 294 aaKnown RBP eCLIP25.27■■□□□ 1.64
DDR1-260ENST00000507533 ABCC10Q5T3U5 1492 aa25.25■■□□□ 1.63
DDR1-260ENST00000507533 ERICH3Q5RHP9 1530 aa25.22■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms