RNA–Protein interactions for RNA: ENST00000507179.1

SKI-203, Transcript of SKI proto-oncogene, humanhuman

TSL 2

Gene SKI, Length 539 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKI-203ENST00000507179 NISCHQ9Y2I1 1504 aa32.23■■■□□ 2.75
SKI-203ENST00000507179 ABCC9O60706 1549 aa28.84■■■□□ 2.21
SKI-203ENST00000507179 CCDC180Q9P1Z9 1646 aa28.8■■■□□ 2.2
SKI-203ENST00000507179 RB1CC1Q8TDY2 1594 aa27.4■■□□□ 1.98
SKI-203ENST00000507179 NACADO15069 1562 aa27.25■■□□□ 1.95
SKI-203ENST00000507179 DCAF8L2P0C7V8 631 aa27.19■■□□□ 1.94
SKI-203ENST00000507179 DNAJC5BQ9UF47 199 aa27.11■■□□□ 1.93
SKI-203ENST00000507179 PABPN1Q86U42 306 aaKnown RBP eCLIP26.92■■□□□ 1.9
SKI-203ENST00000507179 MYO15BQ96JP2 1530 aa26.9■■□□□ 1.9
SKI-203ENST00000507179 UNC13AQ9UPW8 1703 aa26.8■■□□□ 1.88
SKI-203ENST00000507179 ZCCHC6Q5VYS8 1495 aaKnown RBP26.73■■□□□ 1.87
SKI-203ENST00000507179 BICRAQ9NZM4 1560 aa26.7■■□□□ 1.86
SKI-203ENST00000507179 DCAF1Q9Y4B6 1507 aa26.59■■□□□ 1.85
SKI-203ENST00000507179 SCRIBQ14160 1630 aa26.32■■□□□ 1.8
SKI-203ENST00000507179 SHROOM4Q9ULL8 1493 aa26.23■■□□□ 1.79
SKI-203ENST00000507179 CC2D2AQ9P2K1 1620 aa26.03■■□□□ 1.76
SKI-203ENST00000507179 EIF4G1Q04637 1599 aaKnown RBP25.99■■□□□ 1.75
SKI-203ENST00000507179 CECR2Q9BXF3 1484 aa25.96■■□□□ 1.75
SKI-203ENST00000507179 NCAPD3P42695 1498 aa25.21■■□□□ 1.63
SKI-203ENST00000507179 ATAD2BQ9ULI0 1458 aa25.15■■□□□ 1.62
SKI-203ENST00000507179 SMARCA4P51532 1647 aa25.11■■□□□ 1.61
SKI-203ENST00000507179 SMARCA2P51531 1590 aa25.01■■□□□ 1.59
SKI-203ENST00000507179 HMGXB3Q12766 1538 aa24.98■■□□□ 1.59
SKI-203ENST00000507179 BAZ1AQ9NRL2 1556 aaPredicted RBP24.97■■□□□ 1.59
SKI-203ENST00000507179 MROH2BQ7Z745 1585 aa24.88■■□□□ 1.57
SKI-203ENST00000507179 BAZ1BQ9UIG0 1483 aaKnown RBP24.87■■□□□ 1.57
SKI-203ENST00000507179 PEG3Q9GZU2 1588 aa24.86■■□□□ 1.57
SKI-203ENST00000507179 ERCC6Q03468 1493 aa24.83■■□□□ 1.57
SKI-203ENST00000507179 NESP48681 1621 aa24.83■■□□□ 1.57
SKI-203ENST00000507179 CUX2O14529 1486 aa24.77■■□□□ 1.56
SKI-203ENST00000507179 DNAJC5Q9H3Z4 198 aa24.74■■□□□ 1.55
SKI-203ENST00000507179 LAMC3Q9Y6N6 1575 aa24.56■■□□□ 1.52
SKI-203ENST00000507179 WIZO95785 1651 aa24.55■■□□□ 1.52
SKI-203ENST00000507179 THOC2Q8NI27 1593 aaKnown RBP24.5■■□□□ 1.51
SKI-203ENST00000507179 CADPSQ9ULU8 1353 aa24.44■■□□□ 1.5
SKI-203ENST00000507179 PDS5BQ9NTI5 1447 aa24.44■■□□□ 1.5
SKI-203ENST00000507179 KIF21AQ7Z4S6 1674 aa24.43■■□□□ 1.5
SKI-203ENST00000507179 RSF1Q96T23 1441 aaPredicted RBP24.39■■□□□ 1.5
SKI-203ENST00000507179 MRC2Q9UBG0 1479 aa24.24■■□□□ 1.47
SKI-203ENST00000507179 TOP2AP11388 1531 aaKnown RBP24.21■■□□□ 1.47
SKI-203ENST00000507179 WDR62O43379 1518 aa24.19■■□□□ 1.46
SKI-203ENST00000507179 CFTRP13569 1480 aa24.19■■□□□ 1.46
SKI-203ENST00000507179 FANCD2Q9BXW9 1451 aa24.16■■□□□ 1.46
SKI-203ENST00000507179 CEP164Q9UPV0 1460 aa24.14■■□□□ 1.46
SKI-203ENST00000507179 CCDC88BA6NC98 1476 aa24■■□□□ 1.43
SKI-203ENST00000507179 URB2Q14146 1524 aaKnown RBP24■■□□□ 1.43
SKI-203ENST00000507179 PRDM2Q13029 1718 aa23.82■■□□□ 1.4
SKI-203ENST00000507179 TOPBP1Q92547 1522 aa23.71■■□□□ 1.39
SKI-203ENST00000507179 ZNF608Q9ULD9 1512 aaPredicted RBP23.7■■□□□ 1.38
SKI-203ENST00000507179 OSCARQ8IYS5 282 aa23.68■■□□□ 1.38
SKI-203ENST00000507179 TRIM41Q8WV44 630 aa23.68■■□□□ 1.38
SKI-203ENST00000507179 IFT140Q96RY7 1462 aa23.66■■□□□ 1.38
SKI-203ENST00000507179 DNMBPQ6XZF7 1577 aa23.6■■□□□ 1.37
SKI-203ENST00000507179 ABCC8Q09428 1581 aa23.59■■□□□ 1.37
SKI-203ENST00000507179 TARBP1Q13395 1621 aaKnown RBP23.5■■□□□ 1.35
SKI-203ENST00000507179 EIF4G3O43432 1585 aaKnown RBP23.49■■□□□ 1.35
SKI-203ENST00000507179 AQRO60306 1485 aaKnown RBP eCLIP23.49■■□□□ 1.358e-6■■■■□ 23.2
SKI-203ENST00000507179 POLA1P09884 1462 aaPredicted RBP23.49■■□□□ 1.35
SKI-203ENST00000507179 RAD54L2Q9Y4B4 1467 aa23.43■■□□□ 1.34
SKI-203ENST00000507179 SOGA1O94964 1423 aa23.37■■□□□ 1.33
SKI-203ENST00000507179 SUPT5HO00267 1087 aaKnown RBP23.36■■□□□ 1.33
SKI-203ENST00000507179 CUX1P39880 1505 aa23.36■■□□□ 1.33
SKI-203ENST00000507179 RIMBP3CA6NJZ7 1639 aa23.36■■□□□ 1.33
SKI-203ENST00000507179 RIMBP3BA6NNM3 1639 aa23.36■■□□□ 1.33
SKI-203ENST00000507179 RIMBP3Q9UFD9 1639 aa23.36■■□□□ 1.33
SKI-203ENST00000507179 TDRD9Q8NDG6 1382 aaKnown RBP23.35■■□□□ 1.33
SKI-203ENST00000507179 FGD5Q6ZNL6 1462 aa23.34■■□□□ 1.33
SKI-203ENST00000507179 ARHGEF11O15085 1522 aa23.31■■□□□ 1.32
SKI-203ENST00000507179 CHD1O14646 1710 aa23.28■■□□□ 1.32
SKI-203ENST00000507179 FBLN2P98095 1184 aa23.28■■□□□ 1.32
SKI-203ENST00000507179 SNAPC4Q5SXM2 1469 aa23.21■■□□□ 1.31
SKI-203ENST00000507179 WDR97A6NE52 1622 aa23.17■■□□□ 1.3
SKI-203ENST00000507179 CYB5RLQ6IPT4 315 aa23.15■■□□□ 1.3
SKI-203ENST00000507179 GRIN2BQ13224 1484 aa23.13■■□□□ 1.29
SKI-203ENST00000507179 MAGI1Q96QZ7 1491 aaPredicted RBP23.11■■□□□ 1.29
SKI-203ENST00000507179 ARAP1Q96P48 1450 aa23.11■■□□□ 1.29
SKI-203ENST00000507179 CHMP7Q8WUX9 453 aaPredicted RBP23.1■■□□□ 1.29
SKI-203ENST00000507179 GAPVD1Q14C86 1478 aa23.08■■□□□ 1.29
SKI-203ENST00000507179 CLASP1Q7Z460 1538 aa23.07■■□□□ 1.28
SKI-203ENST00000507179 ABCA10Q8WWZ4 1543 aa23.07■■□□□ 1.28
SKI-203ENST00000507179 SYNJ2O15056 1496 aa23.05■■□□□ 1.28
SKI-203ENST00000507179 ABCA5Q8WWZ7 1642 aa23.02■■□□□ 1.28
SKI-203ENST00000507179 PBRM1Q86U86 1689 aa23■■□□□ 1.27
SKI-203ENST00000507179 SYNJ1O43426 1573 aa22.99■■□□□ 1.27
SKI-203ENST00000507179 WRNQ14191 1432 aaPredicted RBP eCLIP22.98■■□□□ 1.27
SKI-203ENST00000507179 TOP2BQ02880 1626 aa22.95■■□□□ 1.26
SKI-203ENST00000507179 BIVM-ERCC5R4GMW8 1640 aa22.93■■□□□ 1.26
SKI-203ENST00000507179 GRIN2AQ12879 1464 aa22.85■■□□□ 1.25
SKI-203ENST00000507179 ADAMTS12P58397 1594 aa22.84■■□□□ 1.25
SKI-203ENST00000507179 TRHP20396 242 aaPredicted RBP22.83■■□□□ 1.25
SKI-203ENST00000507179 NUP160Q12769 1436 aa22.79■■□□□ 1.24
SKI-203ENST00000507179 CEP170Q5SW79 1584 aa22.79■■□□□ 1.24
SKI-203ENST00000507179 FHAD1B1AJZ9 1412 aa22.78■■□□□ 1.24
SKI-203ENST00000507179 ERCC6L2Q5T890 1561 aa22.77■■□□□ 1.24
SKI-203ENST00000507179 ERICH3Q5RHP9 1530 aa22.76■■□□□ 1.23
SKI-203ENST00000507179 SHROOM2Q13796 1616 aa22.65■■□□□ 1.22
SKI-203ENST00000507179 PRG4Q92954 1404 aaPredicted RBP22.57■■□□□ 1.2
SKI-203ENST00000507179 IGF1RP08069 1367 aa22.56■■□□□ 1.2
SKI-203ENST00000507179 JPH4Q96JJ6 628 aa22.56■■□□□ 1.2
SKI-203ENST00000507179 RUSC2Q8N2Y8 1516 aa22.52■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 139.2 ms