RNA–Protein interactions for RNA: ENST00000507162.1

VCAN-207, Transcript of versican, humanhuman

TSL 3

Gene VCAN, Length 766 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-207ENST00000507162 NISCHQ9Y2I1 1504 aa18.62■□□□□ 0.57
VCAN-207ENST00000507162 ABCC9O60706 1549 aa17.79■□□□□ 0.44
VCAN-207ENST00000507162 AEBP2Q6ZN18 517 aaPredicted RBP17.63■□□□□ 0.41
VCAN-207ENST00000507162 DNAJC5BQ9UF47 199 aa17.39■□□□□ 0.37
VCAN-207ENST00000507162 CCDC180Q9P1Z9 1646 aa16.85■□□□□ 0.29
VCAN-207ENST00000507162 PABPN1Q86U42 306 aaKnown RBP eCLIP16.59■□□□□ 0.25
VCAN-207ENST00000507162 RB1CC1Q8TDY2 1594 aa16.49■□□□□ 0.23
VCAN-207ENST00000507162 CHIC1Q5VXU3 224 aa16.46■□□□□ 0.23
VCAN-207ENST00000507162 DNAJC5Q9H3Z4 198 aa16.45■□□□□ 0.22
VCAN-207ENST00000507162 DCAF8L2P0C7V8 631 aa16.38■□□□□ 0.21
VCAN-207ENST00000507162 NACADO15069 1562 aa16.2■□□□□ 0.18
VCAN-207ENST00000507162 CECR2Q9BXF3 1484 aa16.06■□□□□ 0.16
VCAN-207ENST00000507162 UNC13AQ9UPW8 1703 aa16.02■□□□□ 0.16
VCAN-207ENST00000507162 BICRAQ9NZM4 1560 aa16.01■□□□□ 0.15
VCAN-207ENST00000507162 CC2D2AQ9P2K1 1620 aa15.94■□□□□ 0.14
VCAN-207ENST00000507162 EIF4G1Q04637 1599 aaKnown RBP15.7■□□□□ 0.1
VCAN-207ENST00000507162 MYO15BQ96JP2 1530 aa15.68■□□□□ 0.1
VCAN-207ENST00000507162 SHROOM4Q9ULL8 1493 aa15.65■□□□□ 0.1
VCAN-207ENST00000507162 TRIM41Q8WV44 630 aa15.56■□□□□ 0.08
VCAN-207ENST00000507162 CUX2O14529 1486 aa15.51■□□□□ 0.07
VCAN-207ENST00000507162 SCRIBQ14160 1630 aa15.48■□□□□ 0.07
VCAN-207ENST00000507162 ERCC6Q03468 1493 aa15.41■□□□□ 0.06
VCAN-207ENST00000507162 DCAF1Q9Y4B6 1507 aa15.23■□□□□ 0.03
VCAN-207ENST00000507162 ZCCHC6Q5VYS8 1495 aaKnown RBP15.23■□□□□ 0.03
VCAN-207ENST00000507162 SENP3Q9H4L4 574 aaPredicted RBP15.16■□□□□ 0.02
VCAN-207ENST00000507162 NESP48681 1621 aa15.06■□□□□ 0
VCAN-207ENST00000507162 NCAPD3P42695 1498 aa15.01□□□□□ -0.01
VCAN-207ENST00000507162 ATAD2BQ9ULI0 1458 aa14.89□□□□□ -0.03
VCAN-207ENST00000507162 THOC2Q8NI27 1593 aaKnown RBP14.89□□□□□ -0.03
VCAN-207ENST00000507162 OSCARQ8IYS5 282 aa14.88□□□□□ -0.03
VCAN-207ENST00000507162 SMARCA2P51531 1590 aa14.86□□□□□ -0.03
VCAN-207ENST00000507162 PHF23Q9BUL5 403 aaPredicted RBP14.85□□□□□ -0.03
VCAN-207ENST00000507162 PDS5BQ9NTI5 1447 aa14.78□□□□□ -0.04
VCAN-207ENST00000507162 HMGXB3Q12766 1538 aa14.75□□□□□ -0.05
VCAN-207ENST00000507162 TRHP20396 242 aaPredicted RBP14.73□□□□□ -0.05
VCAN-207ENST00000507162 LAMC3Q9Y6N6 1575 aa14.73□□□□□ -0.05
VCAN-207ENST00000507162 BAZ1BQ9UIG0 1483 aaKnown RBP14.72□□□□□ -0.05
VCAN-207ENST00000507162 KIF21AQ7Z4S6 1674 aa14.71□□□□□ -0.05
VCAN-207ENST00000507162 BAZ1AQ9NRL2 1556 aaPredicted RBP14.68□□□□□ -0.06
VCAN-207ENST00000507162 MRC2Q9UBG0 1479 aa14.64□□□□□ -0.07
VCAN-207ENST00000507162 CYB5RLQ6IPT4 315 aa14.63□□□□□ -0.07
VCAN-207ENST00000507162 SMARCA4P51532 1647 aa14.63□□□□□ -0.07
VCAN-207ENST00000507162 CADPSQ9ULU8 1353 aa14.6□□□□□ -0.07
VCAN-207ENST00000507162 RIMBP3CA6NJZ7 1639 aa14.57□□□□□ -0.08
VCAN-207ENST00000507162 RIMBP3BA6NNM3 1639 aa14.57□□□□□ -0.08
VCAN-207ENST00000507162 RIMBP3Q9UFD9 1639 aa14.57□□□□□ -0.08
VCAN-207ENST00000507162 WDR62O43379 1518 aa14.56□□□□□ -0.08
VCAN-207ENST00000507162 POTEDQ86YR6 584 aa14.51□□□□□ -0.09
VCAN-207ENST00000507162 ARHGEF11O15085 1522 aa14.47□□□□□ -0.09
VCAN-207ENST00000507162 CEP164Q9UPV0 1460 aa14.46□□□□□ -0.09
VCAN-207ENST00000507162 PEG3Q9GZU2 1588 aa14.43□□□□□ -0.1
VCAN-207ENST00000507162 FANCD2Q9BXW9 1451 aa14.4□□□□□ -0.1
VCAN-207ENST00000507162 MROH2BQ7Z745 1585 aa14.37□□□□□ -0.11
VCAN-207ENST00000507162 FBLN2P98095 1184 aa14.32□□□□□ -0.12
VCAN-207ENST00000507162 ARAP1Q96P48 1450 aa14.3□□□□□ -0.12
VCAN-207ENST00000507162 URB2Q14146 1524 aaKnown RBP14.3□□□□□ -0.12
VCAN-207ENST00000507162 ZNF608Q9ULD9 1512 aaPredicted RBP14.28□□□□□ -0.12
VCAN-207ENST00000507162 ILDR1Q86SU0 546 aaPredicted RBP14.24□□□□□ -0.13
VCAN-207ENST00000507162 CFTRP13569 1480 aa14.21□□□□□ -0.13
VCAN-207ENST00000507162 FOXD1Q16676 465 aa14.21□□□□□ -0.13
VCAN-207ENST00000507162 IFT140Q96RY7 1462 aa14.19□□□□□ -0.14
VCAN-207ENST00000507162 RSF1Q96T23 1441 aaPredicted RBP14.15□□□□□ -0.14
VCAN-207ENST00000507162 WIZO95785 1651 aa14.14□□□□□ -0.15
VCAN-207ENST00000507162 AQRO60306 1485 aaKnown RBP eCLIP14.12□□□□□ -0.15
VCAN-207ENST00000507162 CHD1O14646 1710 aa14.07□□□□□ -0.16
VCAN-207ENST00000507162 EIF4G3O43432 1585 aaKnown RBP14.05□□□□□ -0.16
VCAN-207ENST00000507162 CHMP7Q8WUX9 453 aaPredicted RBP14.03□□□□□ -0.16
VCAN-207ENST00000507162 TOPBP1Q92547 1522 aa14.03□□□□□ -0.16
VCAN-207ENST00000507162 TDRD9Q8NDG6 1382 aaKnown RBP13.96□□□□□ -0.18
VCAN-207ENST00000507162 ABCC8Q09428 1581 aa13.93□□□□□ -0.18
VCAN-207ENST00000507162 GAPVD1Q14C86 1478 aa13.92□□□□□ -0.18
VCAN-207ENST00000507162 KDM4FA0A1W2PPD8 638 aa13.91□□□□□ -0.18
VCAN-207ENST00000507162 CLASP1Q7Z460 1538 aa13.9□□□□□ -0.19
VCAN-207ENST00000507162 SNAPC4Q5SXM2 1469 aa13.88□□□□□ -0.19
VCAN-207ENST00000507162 TARBP1Q13395 1621 aaKnown RBP13.88□□□□□ -0.19
VCAN-207ENST00000507162 RAD54L2Q9Y4B4 1467 aa13.87□□□□□ -0.19
VCAN-207ENST00000507162 TOP2AP11388 1531 aaKnown RBP13.87□□□□□ -0.19
VCAN-207ENST00000507162 SYNJ1O43426 1573 aa13.87□□□□□ -0.19
VCAN-207ENST00000507162 SOGA1O94964 1423 aa13.86□□□□□ -0.19
VCAN-207ENST00000507162 DNMBPQ6XZF7 1577 aa13.86□□□□□ -0.19
VCAN-207ENST00000507162 CCDC88BA6NC98 1476 aa13.83□□□□□ -0.2
VCAN-207ENST00000507162 POLA1P09884 1462 aaPredicted RBP13.83□□□□□ -0.2
VCAN-207ENST00000507162 PRDM2Q13029 1718 aa13.83□□□□□ -0.2
VCAN-207ENST00000507162 FAM69CQ0P6D2 419 aa13.8□□□□□ -0.2
VCAN-207ENST00000507162 MAGI1Q96QZ7 1491 aaPredicted RBP13.76□□□□□ -0.21
VCAN-207ENST00000507162 SYNJ2O15056 1496 aa13.75□□□□□ -0.21
VCAN-207ENST00000507162 GRIN2BQ13224 1484 aa13.74□□□□□ -0.21
VCAN-207ENST00000507162 ERCC6L2Q5T890 1561 aa13.71□□□□□ -0.21
VCAN-207ENST00000507162 NPM1P06748 294 aaKnown RBP eCLIP13.69□□□□□ -0.22
VCAN-207ENST00000507162 FGD5Q6ZNL6 1462 aa13.67□□□□□ -0.22
VCAN-207ENST00000507162 KIF13AQ9H1H9 1805 aa13.67□□□□□ -0.22
VCAN-207ENST00000507162 FBXO41Q8TF61 875 aa13.62□□□□□ -0.23
VCAN-207ENST00000507162 WDR97A6NE52 1622 aa13.61□□□□□ -0.23
VCAN-207ENST00000507162 MSH5O43196 834 aa13.6□□□□□ -0.23
VCAN-207ENST00000507162 ABCC10Q5T3U5 1492 aa13.6□□□□□ -0.23
VCAN-207ENST00000507162 CEP170Q5SW79 1584 aa13.59□□□□□ -0.23
VCAN-207ENST00000507162 KDM6BO15054 1643 aa13.58□□□□□ -0.24
VCAN-207ENST00000507162 JPH4Q96JJ6 628 aa13.55□□□□□ -0.24
VCAN-207ENST00000507162 GRIN2AQ12879 1464 aa13.55□□□□□ -0.24
VCAN-207ENST00000507162 PRG4Q92954 1404 aaPredicted RBP13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms