RNA–Protein interactions for RNA: ENST00000506958.5

APBB3-213, Transcript of amyloid beta precursor protein binding family B member 3, humanhuman

TSL 3

Gene APBB3, Length 987 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APBB3-213ENST00000506958 NISCHQ9Y2I1 1504 aa52.28■■■■■ 5.96
APBB3-213ENST00000506958 CCDC180Q9P1Z9 1646 aa46.62■■■■■ 5.05
APBB3-213ENST00000506958 ABCC9O60706 1549 aa45.6■■■■■ 4.89
APBB3-213ENST00000506958 RB1CC1Q8TDY2 1594 aa43.92■■■■■ 4.62
APBB3-213ENST00000506958 NACADO15069 1562 aa43.84■■■■■ 4.61
APBB3-213ENST00000506958 DCAF8L2P0C7V8 631 aa43.65■■■■■ 4.58
APBB3-213ENST00000506958 MYO15BQ96JP2 1530 aa43.58■■■■■ 4.57
APBB3-213ENST00000506958 ZCCHC6Q5VYS8 1495 aaKnown RBP43.55■■■■■ 4.56
APBB3-213ENST00000506958 DCAF1Q9Y4B6 1507 aa43.32■■■■■ 4.53
APBB3-213ENST00000506958 UNC13AQ9UPW8 1703 aa42.84■■■■■ 4.45
APBB3-213ENST00000506958 PABPN1Q86U42 306 aaKnown RBP eCLIP42.52■■■■■ 4.4
APBB3-213ENST00000506958 BICRAQ9NZM4 1560 aa42.48■■■■■ 4.39
APBB3-213ENST00000506958 SCRIBQ14160 1630 aa42.44■■■■■ 4.38
APBB3-213ENST00000506958 SHROOM4Q9ULL8 1493 aa42.23■■■■■ 4.35
APBB3-213ENST00000506958 DNAJC5BQ9UF47 199 aa41.81■■■■■ 4.28
APBB3-213ENST00000506958 EIF4G1Q04637 1599 aaKnown RBP41.42■■■■■ 4.22
APBB3-213ENST00000506958 CC2D2AQ9P2K1 1620 aa41.27■■■■■ 4.2
APBB3-213ENST00000506958 CECR2Q9BXF3 1484 aa41.02■■■■■ 4.16
APBB3-213ENST00000506958 SMARCA4P51532 1647 aa40.61■■■■■ 4.09
APBB3-213ENST00000506958 BAZ1AQ9NRL2 1556 aaPredicted RBP40.59■■■■■ 4.09
APBB3-213ENST00000506958 SMARCA2P51531 1590 aa40.43■■■■■ 4.06
APBB3-213ENST00000506958 NCAPD3P42695 1498 aa40.4■■■■■ 4.06
APBB3-213ENST00000506958 ATAD2BQ9ULI0 1458 aa40.39■■■■■ 4.06
APBB3-213ENST00000506958 HMGXB3Q12766 1538 aa40.26■■■■■ 4.03
APBB3-213ENST00000506958 MROH2BQ7Z745 1585 aa40.24■■■■■ 4.03
APBB3-213ENST00000506958 PEG3Q9GZU2 1588 aa40.24■■■■■ 4.03
APBB3-213ENST00000506958 BAZ1BQ9UIG0 1483 aaKnown RBP40.1■■■■■ 4.01
APBB3-213ENST00000506958 WIZO95785 1651 aa39.8■■■■□ 3.96
APBB3-213ENST00000506958 RSF1Q96T23 1441 aaPredicted RBP39.75■■■■□ 3.95
APBB3-213ENST00000506958 TOP2AP11388 1531 aaKnown RBP39.46■■■■□ 3.91
APBB3-213ENST00000506958 LAMC3Q9Y6N6 1575 aa39.41■■■■□ 3.9
APBB3-213ENST00000506958 ERCC6Q03468 1493 aa39.4■■■■□ 3.9
APBB3-213ENST00000506958 NESP48681 1621 aa39.38■■■■□ 3.89
APBB3-213ENST00000506958 CADPSQ9ULU8 1353 aa39.21■■■■□ 3.87
APBB3-213ENST00000506958 PDS5BQ9NTI5 1447 aa39.14■■■■□ 3.86
APBB3-213ENST00000506958 CUX2O14529 1486 aa39.05■■■■□ 3.84
APBB3-213ENST00000506958 KIF21AQ7Z4S6 1674 aa38.98■■■■□ 3.83
APBB3-213ENST00000506958 CFTRP13569 1480 aa38.97■■■■□ 3.83
APBB3-213ENST00000506958 CCDC88BA6NC98 1476 aa38.92■■■■□ 3.82
APBB3-213ENST00000506958 THOC2Q8NI27 1593 aaKnown RBP38.9■■■■□ 3.82
APBB3-213ENST00000506958 FANCD2Q9BXW9 1451 aa38.78■■■■□ 3.8
APBB3-213ENST00000506958 CEP164Q9UPV0 1460 aa38.78■■■■□ 3.8
APBB3-213ENST00000506958 PRDM2Q13029 1718 aa38.74■■■■□ 3.79
APBB3-213ENST00000506958 MRC2Q9UBG0 1479 aa38.73■■■■□ 3.79
APBB3-213ENST00000506958 SUPT5HO00267 1087 aaKnown RBP38.63■■■■□ 3.77
APBB3-213ENST00000506958 WDR62O43379 1518 aa38.6■■■■□ 3.77
APBB3-213ENST00000506958 URB2Q14146 1524 aaKnown RBP38.36■■■■□ 3.73
APBB3-213ENST00000506958 ABCC8Q09428 1581 aa38.22■■■■□ 3.71
APBB3-213ENST00000506958 TOPBP1Q92547 1522 aa38.14■■■■□ 3.7
APBB3-213ENST00000506958 DNMBPQ6XZF7 1577 aa38.12■■■■□ 3.69
APBB3-213ENST00000506958 IFT140Q96RY7 1462 aa37.97■■■■□ 3.67
APBB3-213ENST00000506958 DNAJC5Q9H3Z4 198 aa37.87■■■■□ 3.65
APBB3-213ENST00000506958 POLA1P09884 1462 aaPredicted RBP37.8■■■■□ 3.64
APBB3-213ENST00000506958 CUX1P39880 1505 aa37.78■■■■□ 3.64
APBB3-213ENST00000506958 TARBP1Q13395 1621 aaKnown RBP37.72■■■■□ 3.63
APBB3-213ENST00000506958 ZNF608Q9ULD9 1512 aaPredicted RBP37.71■■■■□ 3.63
APBB3-213ENST00000506958 FGD5Q6ZNL6 1462 aa37.7■■■■□ 3.63
APBB3-213ENST00000506958 SOGA1O94964 1423 aa37.64■■■■□ 3.62
APBB3-213ENST00000506958 EIF4G3O43432 1585 aaKnown RBP37.63■■■■□ 3.61
APBB3-213ENST00000506958 RAD54L2Q9Y4B4 1467 aa37.58■■■■□ 3.61
APBB3-213ENST00000506958 WDR97A6NE52 1622 aa37.54■■■■□ 3.6
APBB3-213ENST00000506958 WRNQ14191 1432 aaPredicted RBP eCLIP37.54■■■■□ 3.6
APBB3-213ENST00000506958 BIVM-ERCC5R4GMW8 1640 aa37.48■■■■□ 3.59
APBB3-213ENST00000506958 AQRO60306 1485 aaKnown RBP eCLIP37.48■■■■□ 3.594e-6■■■■■ 31
APBB3-213ENST00000506958 TOP2BQ02880 1626 aa37.47■■■■□ 3.59
APBB3-213ENST00000506958 SYNJ1O43426 1573 aa37.41■■■■□ 3.58
APBB3-213ENST00000506958 TDRD9Q8NDG6 1382 aaKnown RBP37.4■■■■□ 3.58
APBB3-213ENST00000506958 ABCA10Q8WWZ4 1543 aa37.36■■■■□ 3.57
APBB3-213ENST00000506958 OSCARQ8IYS5 282 aa37.35■■■■□ 3.57
APBB3-213ENST00000506958 GRIN2BQ13224 1484 aa37.26■■■■□ 3.56
APBB3-213ENST00000506958 GAPVD1Q14C86 1478 aa37.23■■■■□ 3.55
APBB3-213ENST00000506958 ABCA5Q8WWZ7 1642 aa37.21■■■■□ 3.55
APBB3-213ENST00000506958 MAGI1Q96QZ7 1491 aaPredicted RBP37.2■■■■□ 3.54
APBB3-213ENST00000506958 SNAPC4Q5SXM2 1469 aa37.19■■■■□ 3.54
APBB3-213ENST00000506958 PBRM1Q86U86 1689 aa37.17■■■■□ 3.54
APBB3-213ENST00000506958 CHD1O14646 1710 aa37.16■■■■□ 3.54
APBB3-213ENST00000506958 FBLN2P98095 1184 aa37.08■■■■□ 3.53
APBB3-213ENST00000506958 SYNJ2O15056 1496 aa37.02■■■■□ 3.52
APBB3-213ENST00000506958 CHMP7Q8WUX9 453 aaPredicted RBP37■■■■□ 3.51
APBB3-213ENST00000506958 ERICH3Q5RHP9 1530 aa36.94■■■■□ 3.5
APBB3-213ENST00000506958 ADAMTS12P58397 1594 aa36.87■■■■□ 3.49
APBB3-213ENST00000506958 FHAD1B1AJZ9 1412 aa36.82■■■■□ 3.48
APBB3-213ENST00000506958 KIF27Q86VH2 1401 aa36.79■■■■□ 3.48
APBB3-213ENST00000506958 GRIN2AQ12879 1464 aa36.76■■■■□ 3.48
APBB3-213ENST00000506958 CLASP1Q7Z460 1538 aa36.76■■■■□ 3.48
APBB3-213ENST00000506958 ARHGEF11O15085 1522 aa36.75■■■■□ 3.47
APBB3-213ENST00000506958 RIMBP3CA6NJZ7 1639 aa36.74■■■■□ 3.47
APBB3-213ENST00000506958 RIMBP3BA6NNM3 1639 aa36.74■■■■□ 3.47
APBB3-213ENST00000506958 RIMBP3Q9UFD9 1639 aa36.74■■■■□ 3.47
APBB3-213ENST00000506958 CUL7Q14999 1698 aa36.61■■■■□ 3.45
APBB3-213ENST00000506958 NUP160Q12769 1436 aa36.6■■■■□ 3.45
APBB3-213ENST00000506958 IGF1RP08069 1367 aa36.57■■■■□ 3.45
APBB3-213ENST00000506958 TRIM41Q8WV44 630 aa36.56■■■■□ 3.44
APBB3-213ENST00000506958 CEP170Q5SW79 1584 aa36.54■■■■□ 3.44
APBB3-213ENST00000506958 ARAP1Q96P48 1450 aa36.42■■■■□ 3.42
APBB3-213ENST00000506958 CARMIL1Q5VZK9 1371 aa36.4■■■■□ 3.42
APBB3-213ENST00000506958 CYB5RLQ6IPT4 315 aa36.35■■■■□ 3.41
APBB3-213ENST00000506958 SHROOM2Q13796 1616 aa36.34■■■■□ 3.41
APBB3-213ENST00000506958 RUSC2Q8N2Y8 1516 aa36.33■■■■□ 3.41
APBB3-213ENST00000506958 KIAA0586Q9BVV6 1533 aa36.24■■■■□ 3.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms