RNA–Protein interactions for RNA: ENST00000506951.5

PACRGL-217, Transcript of parkin coregulated like, humanhuman

TSL 1 (best)

Gene PACRGL, Length 936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PACRGL-217ENST00000506951 NISCHQ9Y2I1 1504 aa54.11■■■■■ 6.25
PACRGL-217ENST00000506951 CCDC180Q9P1Z9 1646 aa48.5■■■■■ 5.35
PACRGL-217ENST00000506951 ABCC9O60706 1549 aa47.76■■■■■ 5.24
PACRGL-217ENST00000506951 RB1CC1Q8TDY2 1594 aa45.86■■■■■ 4.93
PACRGL-217ENST00000506951 NACADO15069 1562 aa45.67■■■■■ 4.9
PACRGL-217ENST00000506951 DCAF8L2P0C7V8 631 aa45.33■■■■■ 4.85
PACRGL-217ENST00000506951 MYO15BQ96JP2 1530 aa45.25■■■■■ 4.83
PACRGL-217ENST00000506951 ZCCHC6Q5VYS8 1495 aaKnown RBP44.98■■■■■ 4.79
PACRGL-217ENST00000506951 DCAF1Q9Y4B6 1507 aa44.83■■■■■ 4.77
PACRGL-217ENST00000506951 UNC13AQ9UPW8 1703 aa44.78■■■■■ 4.76
PACRGL-217ENST00000506951 PABPN1Q86U42 306 aaKnown RBP eCLIP44.45■■■■■ 4.71
PACRGL-217ENST00000506951 BICRAQ9NZM4 1560 aa44.36■■■■■ 4.69
PACRGL-217ENST00000506951 DNAJC5BQ9UF47 199 aa44.15■■■■■ 4.66
PACRGL-217ENST00000506951 SCRIBQ14160 1630 aa44.07■■■■■ 4.65
PACRGL-217ENST00000506951 SHROOM4Q9ULL8 1493 aa44.06■■■■■ 4.64
PACRGL-217ENST00000506951 EIF4G1Q04637 1599 aaKnown RBP43.3■■■■■ 4.52
PACRGL-217ENST00000506951 CC2D2AQ9P2K1 1620 aa43.24■■■■■ 4.51
PACRGL-217ENST00000506951 CECR2Q9BXF3 1484 aa43.02■■■■■ 4.48
PACRGL-217ENST00000506951 SMARCA4P51532 1647 aa42.14■■■■■ 4.34
PACRGL-217ENST00000506951 NCAPD3P42695 1498 aa42.07■■■■■ 4.33
PACRGL-217ENST00000506951 BAZ1AQ9NRL2 1556 aaPredicted RBP42.05■■■■■ 4.32
PACRGL-217ENST00000506951 SMARCA2P51531 1590 aa42.02■■■■■ 4.32
PACRGL-217ENST00000506951 ATAD2BQ9ULI0 1458 aa41.98■■■■■ 4.31
PACRGL-217ENST00000506951 HMGXB3Q12766 1538 aa41.9■■■■■ 4.3
PACRGL-217ENST00000506951 PEG3Q9GZU2 1588 aa41.76■■■■■ 4.28
PACRGL-217ENST00000506951 BAZ1BQ9UIG0 1483 aaKnown RBP41.67■■■■■ 4.26
PACRGL-217ENST00000506951 MROH2BQ7Z745 1585 aa41.64■■■■■ 4.26
PACRGL-217ENST00000506951 ERCC6Q03468 1493 aa41.31■■■■■ 4.2
PACRGL-217ENST00000506951 WIZO95785 1651 aa41.2■■■■■ 4.19
PACRGL-217ENST00000506951 NESP48681 1621 aa41.14■■■■■ 4.18
PACRGL-217ENST00000506951 LAMC3Q9Y6N6 1575 aa41.13■■■■■ 4.18
PACRGL-217ENST00000506951 CUX2O14529 1486 aa41.09■■■■■ 4.17
PACRGL-217ENST00000506951 RSF1Q96T23 1441 aaPredicted RBP40.97■■■■■ 4.15
PACRGL-217ENST00000506951 PDS5BQ9NTI5 1447 aa40.84■■■■■ 4.13
PACRGL-217ENST00000506951 CADPSQ9ULU8 1353 aa40.8■■■■■ 4.12
PACRGL-217ENST00000506951 TOP2AP11388 1531 aaKnown RBP40.79■■■■■ 4.12
PACRGL-217ENST00000506951 KIF21AQ7Z4S6 1674 aa40.75■■■■■ 4.11
PACRGL-217ENST00000506951 THOC2Q8NI27 1593 aaKnown RBP40.74■■■■■ 4.11
PACRGL-217ENST00000506951 CFTRP13569 1480 aa40.46■■■■■ 4.07
PACRGL-217ENST00000506951 MRC2Q9UBG0 1479 aa40.44■■■■■ 4.06
PACRGL-217ENST00000506951 CEP164Q9UPV0 1460 aa40.39■■■■■ 4.06
PACRGL-217ENST00000506951 FANCD2Q9BXW9 1451 aa40.35■■■■■ 4.05
PACRGL-217ENST00000506951 WDR62O43379 1518 aa40.33■■■■■ 4.05
PACRGL-217ENST00000506951 DNAJC5Q9H3Z4 198 aa40.32■■■■■ 4.05
PACRGL-217ENST00000506951 PRDM2Q13029 1718 aa40.28■■■■■ 4.04
PACRGL-217ENST00000506951 CCDC88BA6NC98 1476 aa40.22■■■■■ 4.03
PACRGL-217ENST00000506951 URB2Q14146 1524 aaKnown RBP39.94■■■■□ 3.98
PACRGL-217ENST00000506951 ABCC8Q09428 1581 aa39.72■■■■□ 3.95
PACRGL-217ENST00000506951 TOPBP1Q92547 1522 aa39.65■■■■□ 3.94
PACRGL-217ENST00000506951 DNMBPQ6XZF7 1577 aa39.61■■■■□ 3.93
PACRGL-217ENST00000506951 IFT140Q96RY7 1462 aa39.57■■■■□ 3.93
PACRGL-217ENST00000506951 SUPT5HO00267 1087 aaKnown RBP39.48■■■■□ 3.91
PACRGL-217ENST00000506951 ZNF608Q9ULD9 1512 aaPredicted RBP39.33■■■■□ 3.89
PACRGL-217ENST00000506951 TARBP1Q13395 1621 aaKnown RBP39.26■■■■□ 3.88
PACRGL-217ENST00000506951 EIF4G3O43432 1585 aaKnown RBP39.26■■■■□ 3.88
PACRGL-217ENST00000506951 POLA1P09884 1462 aaPredicted RBP39.26■■■■□ 3.88
PACRGL-217ENST00000506951 OSCARQ8IYS5 282 aa39.22■■■■□ 3.87
PACRGL-217ENST00000506951 CUX1P39880 1505 aa39.12■■■■□ 3.85
PACRGL-217ENST00000506951 FGD5Q6ZNL6 1462 aa39.1■■■■□ 3.85
PACRGL-217ENST00000506951 SOGA1O94964 1423 aa39.08■■■■□ 3.85
PACRGL-217ENST00000506951 WDR97A6NE52 1622 aa39.07■■■■□ 3.85
PACRGL-217ENST00000506951 AQRO60306 1485 aaKnown RBP eCLIP39.04■■■■□ 3.84
PACRGL-217ENST00000506951 RAD54L2Q9Y4B4 1467 aa39.03■■■■□ 3.84
PACRGL-217ENST00000506951 CHD1O14646 1710 aa38.88■■■■□ 3.81
PACRGL-217ENST00000506951 TDRD9Q8NDG6 1382 aaKnown RBP38.87■■■■□ 3.81
PACRGL-217ENST00000506951 GRIN2BQ13224 1484 aa38.74■■■■□ 3.79
PACRGL-217ENST00000506951 TRIM41Q8WV44 630 aa38.74■■■■□ 3.79
PACRGL-217ENST00000506951 BIVM-ERCC5R4GMW8 1640 aa38.74■■■■□ 3.79
PACRGL-217ENST00000506951 MAGI1Q96QZ7 1491 aaPredicted RBP38.73■■■■□ 3.79
PACRGL-217ENST00000506951 SNAPC4Q5SXM2 1469 aa38.73■■■■□ 3.79
PACRGL-217ENST00000506951 TOP2BQ02880 1626 aa38.72■■■■□ 3.79
PACRGL-217ENST00000506951 ABCA10Q8WWZ4 1543 aa38.72■■■■□ 3.79
PACRGL-217ENST00000506951 WRNQ14191 1432 aaPredicted RBP eCLIP38.71■■■■□ 3.79
PACRGL-217ENST00000506951 FBLN2P98095 1184 aa38.7■■■■□ 3.79
PACRGL-217ENST00000506951 PBRM1Q86U86 1689 aa38.68■■■■□ 3.78
PACRGL-217ENST00000506951 RIMBP3CA6NJZ7 1639 aa38.67■■■■□ 3.78
PACRGL-217ENST00000506951 RIMBP3BA6NNM3 1639 aa38.67■■■■□ 3.78
PACRGL-217ENST00000506951 RIMBP3Q9UFD9 1639 aa38.67■■■■□ 3.78
PACRGL-217ENST00000506951 GAPVD1Q14C86 1478 aa38.66■■■■□ 3.78
PACRGL-217ENST00000506951 ABCA5Q8WWZ7 1642 aa38.63■■■■□ 3.78
PACRGL-217ENST00000506951 SYNJ1O43426 1573 aa38.61■■■■□ 3.77
PACRGL-217ENST00000506951 ARHGEF11O15085 1522 aa38.6■■■■□ 3.77
PACRGL-217ENST00000506951 SYNJ2O15056 1496 aa38.56■■■■□ 3.76
PACRGL-217ENST00000506951 CHMP7Q8WUX9 453 aaPredicted RBP38.55■■■■□ 3.76
PACRGL-217ENST00000506951 CLASP1Q7Z460 1538 aa38.41■■■■□ 3.74
PACRGL-217ENST00000506951 ADAMTS12P58397 1594 aa38.31■■■■□ 3.72
PACRGL-217ENST00000506951 ERICH3Q5RHP9 1530 aa38.29■■■■□ 3.72
PACRGL-217ENST00000506951 GRIN2AQ12879 1464 aa38.23■■■■□ 3.71
PACRGL-217ENST00000506951 ARAP1Q96P48 1450 aa38.21■■■■□ 3.71
PACRGL-217ENST00000506951 FHAD1B1AJZ9 1412 aa38.21■■■■□ 3.71
PACRGL-217ENST00000506951 CYB5RLQ6IPT4 315 aa38.19■■■■□ 3.7
PACRGL-217ENST00000506951 NUP160Q12769 1436 aa38.06■■■■□ 3.68
PACRGL-217ENST00000506951 CEP170Q5SW79 1584 aa38.03■■■■□ 3.68
PACRGL-217ENST00000506951 KIF27Q86VH2 1401 aa37.97■■■■□ 3.67
PACRGL-217ENST00000506951 CUL7Q14999 1698 aa37.89■■■■□ 3.66
PACRGL-217ENST00000506951 SHROOM2Q13796 1616 aa37.89■■■■□ 3.66
PACRGL-217ENST00000506951 IGF1RP08069 1367 aa37.78■■■■□ 3.64
PACRGL-217ENST00000506951 RUSC2Q8N2Y8 1516 aa37.76■■■■□ 3.63
PACRGL-217ENST00000506951 ERCC6L2Q5T890 1561 aa37.74■■■■□ 3.63
PACRGL-217ENST00000506951 TRHP20396 242 aaPredicted RBP37.64■■■■□ 3.62
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms