RNA–Protein interactions for RNA: ENST00000506941.1

NPHP4-210, Transcript of nephrocystin 4, humanhuman

TSL 4

Gene NPHP4, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-210ENST00000506941 NISCHQ9Y2I1 1504 aa44.14■■■■■ 4.66
NPHP4-210ENST00000506941 CCDC180Q9P1Z9 1646 aa39.27■■■■□ 3.88
NPHP4-210ENST00000506941 ABCC9O60706 1549 aa38.16■■■■□ 3.7
NPHP4-210ENST00000506941 ZCCHC6Q5VYS8 1495 aaKnown RBP36.82■■■■□ 3.49
NPHP4-210ENST00000506941 RB1CC1Q8TDY2 1594 aa36.8■■■■□ 3.48
NPHP4-210ENST00000506941 NACADO15069 1562 aa36.78■■■■□ 3.48
NPHP4-210ENST00000506941 DCAF8L2P0C7V8 631 aa36.66■■■■□ 3.46
NPHP4-210ENST00000506941 MYO15BQ96JP2 1530 aa36.59■■■■□ 3.45
NPHP4-210ENST00000506941 DCAF1Q9Y4B6 1507 aa36.52■■■■□ 3.44
NPHP4-210ENST00000506941 UNC13AQ9UPW8 1703 aa36.2■■■■□ 3.39
NPHP4-210ENST00000506941 SCRIBQ14160 1630 aa35.82■■■■□ 3.32
NPHP4-210ENST00000506941 BICRAQ9NZM4 1560 aa35.76■■■■□ 3.32
NPHP4-210ENST00000506941 PABPN1Q86U42 306 aaKnown RBP eCLIP35.62■■■■□ 3.29
NPHP4-210ENST00000506941 SHROOM4Q9ULL8 1493 aa35.28■■■■□ 3.24
NPHP4-210ENST00000506941 DNAJC5BQ9UF47 199 aa34.86■■■■□ 3.17
NPHP4-210ENST00000506941 EIF4G1Q04637 1599 aaKnown RBP34.75■■■■□ 3.15
NPHP4-210ENST00000506941 CC2D2AQ9P2K1 1620 aa34.59■■■■□ 3.13
NPHP4-210ENST00000506941 CECR2Q9BXF3 1484 aa34.38■■■■□ 3.09
NPHP4-210ENST00000506941 SMARCA4P51532 1647 aa34.28■■■■□ 3.08
NPHP4-210ENST00000506941 BAZ1AQ9NRL2 1556 aaPredicted RBP34.19■■■■□ 3.06
NPHP4-210ENST00000506941 MROH2BQ7Z745 1585 aa34.05■■■■□ 3.04
NPHP4-210ENST00000506941 ATAD2BQ9ULI0 1458 aa33.96■■■■□ 3.03
NPHP4-210ENST00000506941 SMARCA2P51531 1590 aa33.94■■■■□ 3.02
NPHP4-210ENST00000506941 PEG3Q9GZU2 1588 aa33.92■■■■□ 3.02
NPHP4-210ENST00000506941 NCAPD3P42695 1498 aa33.89■■■■□ 3.02
NPHP4-210ENST00000506941 HMGXB3Q12766 1538 aa33.82■■■■□ 3
NPHP4-210ENST00000506941 WIZO95785 1651 aa33.75■■■□□ 2.99
NPHP4-210ENST00000506941 BAZ1BQ9UIG0 1483 aaKnown RBP33.69■■■□□ 2.98
NPHP4-210ENST00000506941 RSF1Q96T23 1441 aaPredicted RBP33.66■■■□□ 2.98
NPHP4-210ENST00000506941 TOP2AP11388 1531 aaKnown RBP33.33■■■□□ 2.93
NPHP4-210ENST00000506941 NESP48681 1621 aa33.11■■■□□ 2.89
NPHP4-210ENST00000506941 LAMC3Q9Y6N6 1575 aa33.04■■■□□ 2.88
NPHP4-210ENST00000506941 CCDC88BA6NC98 1476 aa32.92■■■□□ 2.86
NPHP4-210ENST00000506941 CADPSQ9ULU8 1353 aa32.89■■■□□ 2.86
NPHP4-210ENST00000506941 SUPT5HO00267 1087 aaKnown RBP32.85■■■□□ 2.85
NPHP4-210ENST00000506941 KIF21AQ7Z4S6 1674 aa32.85■■■□□ 2.85
NPHP4-210ENST00000506941 ERCC6Q03468 1493 aa32.83■■■□□ 2.85
NPHP4-210ENST00000506941 PRDM2Q13029 1718 aa32.77■■■□□ 2.84
NPHP4-210ENST00000506941 CFTRP13569 1480 aa32.77■■■□□ 2.84
NPHP4-210ENST00000506941 PDS5BQ9NTI5 1447 aa32.71■■■□□ 2.83
NPHP4-210ENST00000506941 THOC2Q8NI27 1593 aaKnown RBP32.64■■■□□ 2.82
NPHP4-210ENST00000506941 FANCD2Q9BXW9 1451 aa32.56■■■□□ 2.8
NPHP4-210ENST00000506941 CEP164Q9UPV0 1460 aa32.51■■■□□ 2.79
NPHP4-210ENST00000506941 CUX2O14529 1486 aa32.45■■■□□ 2.79
NPHP4-210ENST00000506941 MRC2Q9UBG0 1479 aa32.43■■■□□ 2.78
NPHP4-210ENST00000506941 WDR62O43379 1518 aa32.36■■■□□ 2.77
NPHP4-210ENST00000506941 URB2Q14146 1524 aaKnown RBP32.28■■■□□ 2.76
NPHP4-210ENST00000506941 DNMBPQ6XZF7 1577 aa32.09■■■□□ 2.73
NPHP4-210ENST00000506941 TOPBP1Q92547 1522 aa32.09■■■□□ 2.73
NPHP4-210ENST00000506941 ABCC8Q09428 1581 aa32.02■■■□□ 2.72
NPHP4-210ENST00000506941 CUX1P39880 1505 aa31.95■■■□□ 2.7
NPHP4-210ENST00000506941 POLA1P09884 1462 aaPredicted RBP31.82■■■□□ 2.68
NPHP4-210ENST00000506941 TARBP1Q13395 1621 aaKnown RBP31.8■■■□□ 2.68
NPHP4-210ENST00000506941 IFT140Q96RY7 1462 aa31.79■■■□□ 2.68
NPHP4-210ENST00000506941 FGD5Q6ZNL6 1462 aa31.78■■■□□ 2.68
NPHP4-210ENST00000506941 BIVM-ERCC5R4GMW8 1640 aa31.76■■■□□ 2.67
NPHP4-210ENST00000506941 SYNJ1O43426 1573 aa31.75■■■□□ 2.67
NPHP4-210ENST00000506941 TOP2BQ02880 1626 aa31.71■■■□□ 2.67
NPHP4-210ENST00000506941 WRNQ14191 1432 aaPredicted RBP eCLIP31.71■■■□□ 2.67
NPHP4-210ENST00000506941 ZNF608Q9ULD9 1512 aaPredicted RBP31.7■■■□□ 2.66
NPHP4-210ENST00000506941 RAD54L2Q9Y4B4 1467 aa31.68■■■□□ 2.66
NPHP4-210ENST00000506941 EIF4G3O43432 1585 aaKnown RBP31.64■■■□□ 2.66
NPHP4-210ENST00000506941 WDR97A6NE52 1622 aa31.64■■■□□ 2.66
NPHP4-210ENST00000506941 SOGA1O94964 1423 aa31.63■■■□□ 2.65
NPHP4-210ENST00000506941 AQRO60306 1485 aaKnown RBP eCLIP31.51■■■□□ 2.63
NPHP4-210ENST00000506941 ABCA10Q8WWZ4 1543 aa31.46■■■□□ 2.63
NPHP4-210ENST00000506941 TDRD9Q8NDG6 1382 aaKnown RBP31.43■■■□□ 2.62
NPHP4-210ENST00000506941 ABCA5Q8WWZ7 1642 aa31.41■■■□□ 2.62
NPHP4-210ENST00000506941 PBRM1Q86U86 1689 aa31.4■■■□□ 2.62
NPHP4-210ENST00000506941 GAPVD1Q14C86 1478 aa31.3■■■□□ 2.6
NPHP4-210ENST00000506941 CHD1O14646 1710 aa31.29■■■□□ 2.6
NPHP4-210ENST00000506941 GRIN2BQ13224 1484 aa31.27■■■□□ 2.6
NPHP4-210ENST00000506941 SNAPC4Q5SXM2 1469 aa31.24■■■□□ 2.59
NPHP4-210ENST00000506941 DNAJC5Q9H3Z4 198 aa31.19■■■□□ 2.58
NPHP4-210ENST00000506941 MAGI1Q96QZ7 1491 aaPredicted RBP31.18■■■□□ 2.58
NPHP4-210ENST00000506941 ERICH3Q5RHP9 1530 aa31.09■■■□□ 2.57
NPHP4-210ENST00000506941 ADAMTS12P58397 1594 aa31.08■■■□□ 2.57
NPHP4-210ENST00000506941 SYNJ2O15056 1496 aa31.06■■■□□ 2.56
NPHP4-210ENST00000506941 OSCARQ8IYS5 282 aa31.03■■■□□ 2.56
NPHP4-210ENST00000506941 KIF27Q86VH2 1401 aa31■■■□□ 2.55
NPHP4-210ENST00000506941 FBLN2P98095 1184 aa31■■■□□ 2.55
NPHP4-210ENST00000506941 TRIM41Q8WV44 630 aa30.99■■■□□ 2.55
NPHP4-210ENST00000506941 CHMP7Q8WUX9 453 aaPredicted RBP30.93■■■□□ 2.54
NPHP4-210ENST00000506941 FHAD1B1AJZ9 1412 aa30.91■■■□□ 2.54
NPHP4-210ENST00000506941 CUL7Q14999 1698 aa30.9■■■□□ 2.54
NPHP4-210ENST00000506941 GRIN2AQ12879 1464 aa30.89■■■□□ 2.54
NPHP4-210ENST00000506941 RUSC2Q8N2Y8 1516 aa30.88■■■□□ 2.53
NPHP4-210ENST00000506941 IGF1RP08069 1367 aa30.87■■■□□ 2.53
NPHP4-210ENST00000506941 CLASP1Q7Z460 1538 aa30.85■■■□□ 2.53
NPHP4-210ENST00000506941 CEP170Q5SW79 1584 aa30.8■■■□□ 2.52
NPHP4-210ENST00000506941 CHIC1Q5VXU3 224 aa30.78■■■□□ 2.52
NPHP4-210ENST00000506941 NUP160Q12769 1436 aa30.74■■■□□ 2.51
NPHP4-210ENST00000506941 RIMBP3CA6NJZ7 1639 aa30.72■■■□□ 2.51
NPHP4-210ENST00000506941 RIMBP3BA6NNM3 1639 aa30.72■■■□□ 2.51
NPHP4-210ENST00000506941 RIMBP3Q9UFD9 1639 aa30.72■■■□□ 2.51
NPHP4-210ENST00000506941 CARMIL1Q5VZK9 1371 aa30.68■■■□□ 2.5
NPHP4-210ENST00000506941 ARHGEF11O15085 1522 aa30.67■■■□□ 2.5
NPHP4-210ENST00000506941 SHROOM2Q13796 1616 aa30.58■■■□□ 2.49
NPHP4-210ENST00000506941 RAPGEF2Q9Y4G8 1499 aa30.55■■■□□ 2.48
NPHP4-210ENST00000506941 EEA1Q15075 1411 aa30.51■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms