RNA–Protein interactions for RNA: ENST00000506874.1

SNX2-205, Transcript of sorting nexin 2, humanhuman

TSL 3

Gene SNX2, Length 200 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX2-205ENST00000506874 NISCHQ9Y2I1 1504 aa40.62■■■■■ 4.09
SNX2-205ENST00000506874 ABCC9O60706 1549 aa36.56■■■■□ 3.44
SNX2-205ENST00000506874 CCDC180Q9P1Z9 1646 aa36.43■■■■□ 3.42
SNX2-205ENST00000506874 RB1CC1Q8TDY2 1594 aa34.72■■■■□ 3.15
SNX2-205ENST00000506874 DCAF8L2P0C7V8 631 aa34.46■■■■□ 3.11
SNX2-205ENST00000506874 NACADO15069 1562 aa34.45■■■■□ 3.11
SNX2-205ENST00000506874 DNAJC5BQ9UF47 199 aa34.34■■■■□ 3.09
SNX2-205ENST00000506874 PABPN1Q86U42 306 aaKnown RBP eCLIP34.08■■■■□ 3.05
SNX2-205ENST00000506874 UNC13AQ9UPW8 1703 aa33.97■■■■□ 3.03
SNX2-205ENST00000506874 MYO15BQ96JP2 1530 aa33.9■■■■□ 3.02
SNX2-205ENST00000506874 BICRAQ9NZM4 1560 aa33.72■■■□□ 2.99
SNX2-205ENST00000506874 ZCCHC6Q5VYS8 1495 aaKnown RBP33.63■■■□□ 2.97
SNX2-205ENST00000506874 DCAF1Q9Y4B6 1507 aa33.48■■■□□ 2.95
SNX2-205ENST00000506874 SCRIBQ14160 1630 aa33.28■■■□□ 2.92
SNX2-205ENST00000506874 SHROOM4Q9ULL8 1493 aa33.17■■■□□ 2.9
SNX2-205ENST00000506874 CC2D2AQ9P2K1 1620 aa32.99■■■□□ 2.87
SNX2-205ENST00000506874 CECR2Q9BXF3 1484 aa32.91■■■□□ 2.86
SNX2-205ENST00000506874 EIF4G1Q04637 1599 aaKnown RBP32.89■■■□□ 2.86
SNX2-205ENST00000506874 NCAPD3P42695 1498 aa31.8■■■□□ 2.68
SNX2-205ENST00000506874 ATAD2BQ9ULI0 1458 aa31.73■■■□□ 2.67
SNX2-205ENST00000506874 SMARCA4P51532 1647 aa31.71■■■□□ 2.67
SNX2-205ENST00000506874 SMARCA2P51531 1590 aa31.64■■■□□ 2.65
SNX2-205ENST00000506874 ERCC6Q03468 1493 aa31.57■■■□□ 2.64
SNX2-205ENST00000506874 HMGXB3Q12766 1538 aa31.56■■■□□ 2.64
SNX2-205ENST00000506874 BAZ1AQ9NRL2 1556 aaPredicted RBP31.51■■■□□ 2.64
SNX2-205ENST00000506874 DNAJC5Q9H3Z4 198 aa31.51■■■□□ 2.63
SNX2-205ENST00000506874 CUX2O14529 1486 aa31.45■■■□□ 2.62
SNX2-205ENST00000506874 BAZ1BQ9UIG0 1483 aaKnown RBP31.45■■■□□ 2.62
SNX2-205ENST00000506874 NESP48681 1621 aa31.4■■■□□ 2.62
SNX2-205ENST00000506874 PEG3Q9GZU2 1588 aa31.34■■■□□ 2.61
SNX2-205ENST00000506874 MROH2BQ7Z745 1585 aa31.33■■■□□ 2.61
SNX2-205ENST00000506874 LAMC3Q9Y6N6 1575 aa31.1■■■□□ 2.57
SNX2-205ENST00000506874 THOC2Q8NI27 1593 aaKnown RBP31.03■■■□□ 2.56
SNX2-205ENST00000506874 KIF21AQ7Z4S6 1674 aa30.98■■■□□ 2.55
SNX2-205ENST00000506874 WIZO95785 1651 aa30.97■■■□□ 2.55
SNX2-205ENST00000506874 PDS5BQ9NTI5 1447 aa30.95■■■□□ 2.54
SNX2-205ENST00000506874 CADPSQ9ULU8 1353 aa30.87■■■□□ 2.53
SNX2-205ENST00000506874 MRC2Q9UBG0 1479 aa30.69■■■□□ 2.5
SNX2-205ENST00000506874 RSF1Q96T23 1441 aaPredicted RBP30.65■■■□□ 2.5
SNX2-205ENST00000506874 WDR62O43379 1518 aa30.59■■■□□ 2.49
SNX2-205ENST00000506874 CEP164Q9UPV0 1460 aa30.57■■■□□ 2.48
SNX2-205ENST00000506874 TOP2AP11388 1531 aaKnown RBP30.53■■■□□ 2.48
SNX2-205ENST00000506874 FANCD2Q9BXW9 1451 aa30.53■■■□□ 2.48
SNX2-205ENST00000506874 CFTRP13569 1480 aa30.49■■■□□ 2.47
SNX2-205ENST00000506874 URB2Q14146 1524 aaKnown RBP30.29■■■□□ 2.44
SNX2-205ENST00000506874 TRIM41Q8WV44 630 aa30.22■■■□□ 2.43
SNX2-205ENST00000506874 CCDC88BA6NC98 1476 aa30.22■■■□□ 2.43
SNX2-205ENST00000506874 PRDM2Q13029 1718 aa30.2■■■□□ 2.43
SNX2-205ENST00000506874 OSCARQ8IYS5 282 aa30.07■■■□□ 2.4
SNX2-205ENST00000506874 TOPBP1Q92547 1522 aa29.96■■■□□ 2.39
SNX2-205ENST00000506874 IFT140Q96RY7 1462 aa29.94■■■□□ 2.38
SNX2-205ENST00000506874 ZNF608Q9ULD9 1512 aaPredicted RBP29.94■■■□□ 2.38
SNX2-205ENST00000506874 ABCC8Q09428 1581 aa29.84■■■□□ 2.37
SNX2-205ENST00000506874 DNMBPQ6XZF7 1577 aa29.83■■■□□ 2.37
SNX2-205ENST00000506874 EIF4G3O43432 1585 aaKnown RBP29.75■■■□□ 2.35
SNX2-205ENST00000506874 AQRO60306 1485 aaKnown RBP eCLIP29.68■■■□□ 2.34
SNX2-205ENST00000506874 RIMBP3CA6NJZ7 1639 aa29.67■■■□□ 2.34
SNX2-205ENST00000506874 RIMBP3BA6NNM3 1639 aa29.67■■■□□ 2.34
SNX2-205ENST00000506874 RIMBP3Q9UFD9 1639 aa29.67■■■□□ 2.34
SNX2-205ENST00000506874 TARBP1Q13395 1621 aaKnown RBP29.67■■■□□ 2.34
SNX2-205ENST00000506874 POLA1P09884 1462 aaPredicted RBP29.64■■■□□ 2.34
SNX2-205ENST00000506874 RAD54L2Q9Y4B4 1467 aa29.58■■■□□ 2.33
SNX2-205ENST00000506874 CHD1O14646 1710 aa29.57■■■□□ 2.32
SNX2-205ENST00000506874 ARHGEF11O15085 1522 aa29.55■■■□□ 2.32
SNX2-205ENST00000506874 FBLN2P98095 1184 aa29.55■■■□□ 2.32
SNX2-205ENST00000506874 SOGA1O94964 1423 aa29.54■■■□□ 2.32
SNX2-205ENST00000506874 TDRD9Q8NDG6 1382 aaKnown RBP29.51■■■□□ 2.31
SNX2-205ENST00000506874 FGD5Q6ZNL6 1462 aa29.47■■■□□ 2.31
SNX2-205ENST00000506874 CUX1P39880 1505 aa29.43■■■□□ 2.3
SNX2-205ENST00000506874 CYB5RLQ6IPT4 315 aa29.41■■■□□ 2.3
SNX2-205ENST00000506874 SUPT5HO00267 1087 aaKnown RBP29.4■■■□□ 2.3
SNX2-205ENST00000506874 SNAPC4Q5SXM2 1469 aa29.36■■■□□ 2.29
SNX2-205ENST00000506874 WDR97A6NE52 1622 aa29.31■■■□□ 2.28
SNX2-205ENST00000506874 CHMP7Q8WUX9 453 aaPredicted RBP29.28■■■□□ 2.28
SNX2-205ENST00000506874 ARAP1Q96P48 1450 aa29.28■■■□□ 2.28
SNX2-205ENST00000506874 GRIN2BQ13224 1484 aa29.25■■■□□ 2.27
SNX2-205ENST00000506874 MAGI1Q96QZ7 1491 aaPredicted RBP29.23■■■□□ 2.27
SNX2-205ENST00000506874 SYNJ1O43426 1573 aa29.18■■■□□ 2.26
SNX2-205ENST00000506874 CLASP1Q7Z460 1538 aa29.17■■■□□ 2.26
SNX2-205ENST00000506874 GAPVD1Q14C86 1478 aa29.16■■■□□ 2.26
SNX2-205ENST00000506874 PBRM1Q86U86 1689 aa29.15■■■□□ 2.26
SNX2-205ENST00000506874 SYNJ2O15056 1496 aa29.15■■■□□ 2.26
SNX2-205ENST00000506874 TRHP20396 242 aaPredicted RBP29.13■■■□□ 2.25
SNX2-205ENST00000506874 ABCA10Q8WWZ4 1543 aa29.1■■■□□ 2.25
SNX2-205ENST00000506874 ABCA5Q8WWZ7 1642 aa29.05■■■□□ 2.24
SNX2-205ENST00000506874 WRNQ14191 1432 aaPredicted RBP eCLIP28.99■■■□□ 2.23
SNX2-205ENST00000506874 TOP2BQ02880 1626 aa28.93■■■□□ 2.22
SNX2-205ENST00000506874 BIVM-ERCC5R4GMW8 1640 aa28.92■■■□□ 2.22
SNX2-205ENST00000506874 GRIN2AQ12879 1464 aa28.87■■■□□ 2.21
SNX2-205ENST00000506874 ADAMTS12P58397 1594 aa28.85■■■□□ 2.21
SNX2-205ENST00000506874 CEP170Q5SW79 1584 aa28.79■■■□□ 2.2
SNX2-205ENST00000506874 ERCC6L2Q5T890 1561 aa28.78■■■□□ 2.2
SNX2-205ENST00000506874 FHAD1B1AJZ9 1412 aa28.77■■■□□ 2.2
SNX2-205ENST00000506874 NUP160Q12769 1436 aa28.76■■■□□ 2.19
SNX2-205ENST00000506874 ERICH3Q5RHP9 1530 aa28.72■■■□□ 2.19
SNX2-205ENST00000506874 SHROOM2Q13796 1616 aa28.63■■■□□ 2.17
SNX2-205ENST00000506874 PRG4Q92954 1404 aaPredicted RBP28.53■■■□□ 2.16
SNX2-205ENST00000506874 JPH4Q96JJ6 628 aa28.52■■■□□ 2.16
SNX2-205ENST00000506874 RUSC2Q8N2Y8 1516 aa28.43■■■□□ 2.14
SNX2-205ENST00000506874 IGF1RP08069 1367 aa28.38■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms