RNA–Protein interactions for RNA: ENST00000506575.1

CLDND1-211, Transcript of claudin domain containing 1, humanhuman

TSL 3

Gene CLDND1, Length 414 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-211ENST00000506575 NISCHQ9Y2I1 1504 aa38.12■■■■□ 3.69
CLDND1-211ENST00000506575 CCDC180Q9P1Z9 1646 aa34.03■■■■□ 3.04
CLDND1-211ENST00000506575 ABCC9O60706 1549 aa33.51■■■□□ 2.95
CLDND1-211ENST00000506575 RB1CC1Q8TDY2 1594 aa32.15■■■□□ 2.74
CLDND1-211ENST00000506575 NACADO15069 1562 aa32.03■■■□□ 2.72
CLDND1-211ENST00000506575 DCAF8L2P0C7V8 631 aa32.01■■■□□ 2.71
CLDND1-211ENST00000506575 MYO15BQ96JP2 1530 aa31.74■■■□□ 2.67
CLDND1-211ENST00000506575 ZCCHC6Q5VYS8 1495 aaKnown RBP31.7■■■□□ 2.66
CLDND1-211ENST00000506575 DCAF1Q9Y4B6 1507 aa31.52■■■□□ 2.64
CLDND1-211ENST00000506575 UNC13AQ9UPW8 1703 aa31.41■■■□□ 2.62
CLDND1-211ENST00000506575 PABPN1Q86U42 306 aaKnown RBP eCLIP31.26■■■□□ 2.59
CLDND1-211ENST00000506575 BICRAQ9NZM4 1560 aa31.13■■■□□ 2.57
CLDND1-211ENST00000506575 SCRIBQ14160 1630 aa31.04■■■□□ 2.56
CLDND1-211ENST00000506575 DNAJC5BQ9UF47 199 aa30.9■■■□□ 2.54
CLDND1-211ENST00000506575 SHROOM4Q9ULL8 1493 aa30.82■■■□□ 2.52
CLDND1-211ENST00000506575 EIF4G1Q04637 1599 aaKnown RBP30.36■■■□□ 2.45
CLDND1-211ENST00000506575 CC2D2AQ9P2K1 1620 aa30.29■■■□□ 2.44
CLDND1-211ENST00000506575 CECR2Q9BXF3 1484 aa30.13■■■□□ 2.41
CLDND1-211ENST00000506575 SMARCA4P51532 1647 aa29.64■■■□□ 2.34
CLDND1-211ENST00000506575 BAZ1AQ9NRL2 1556 aaPredicted RBP29.59■■■□□ 2.33
CLDND1-211ENST00000506575 NCAPD3P42695 1498 aa29.53■■■□□ 2.32
CLDND1-211ENST00000506575 ATAD2BQ9ULI0 1458 aa29.52■■■□□ 2.32
CLDND1-211ENST00000506575 SMARCA2P51531 1590 aa29.52■■■□□ 2.32
CLDND1-211ENST00000506575 HMGXB3Q12766 1538 aa29.39■■■□□ 2.3
CLDND1-211ENST00000506575 MROH2BQ7Z745 1585 aa29.37■■■□□ 2.29
CLDND1-211ENST00000506575 PEG3Q9GZU2 1588 aa29.34■■■□□ 2.29
CLDND1-211ENST00000506575 BAZ1BQ9UIG0 1483 aaKnown RBP29.3■■■□□ 2.28
CLDND1-211ENST00000506575 WIZO95785 1651 aa29.06■■■□□ 2.24
CLDND1-211ENST00000506575 RSF1Q96T23 1441 aaPredicted RBP28.94■■■□□ 2.22
CLDND1-211ENST00000506575 ERCC6Q03468 1493 aa28.94■■■□□ 2.22
CLDND1-211ENST00000506575 NESP48681 1621 aa28.91■■■□□ 2.22
CLDND1-211ENST00000506575 LAMC3Q9Y6N6 1575 aa28.84■■■□□ 2.21
CLDND1-211ENST00000506575 TOP2AP11388 1531 aaKnown RBP28.74■■■□□ 2.19
CLDND1-211ENST00000506575 CUX2O14529 1486 aa28.68■■■□□ 2.18
CLDND1-211ENST00000506575 CADPSQ9ULU8 1353 aa28.67■■■□□ 2.18
CLDND1-211ENST00000506575 PDS5BQ9NTI5 1447 aa28.65■■■□□ 2.18
CLDND1-211ENST00000506575 KIF21AQ7Z4S6 1674 aa28.61■■■□□ 2.17
CLDND1-211ENST00000506575 THOC2Q8NI27 1593 aaKnown RBP28.53■■■□□ 2.16
CLDND1-211ENST00000506575 CFTRP13569 1480 aa28.45■■■□□ 2.14
CLDND1-211ENST00000506575 CCDC88BA6NC98 1476 aa28.39■■■□□ 2.13
CLDND1-211ENST00000506575 CEP164Q9UPV0 1460 aa28.37■■■□□ 2.13
CLDND1-211ENST00000506575 FANCD2Q9BXW9 1451 aa28.36■■■□□ 2.13
CLDND1-211ENST00000506575 MRC2Q9UBG0 1479 aa28.36■■■□□ 2.13
CLDND1-211ENST00000506575 PRDM2Q13029 1718 aa28.28■■■□□ 2.12
CLDND1-211ENST00000506575 WDR62O43379 1518 aa28.26■■■□□ 2.11
CLDND1-211ENST00000506575 SUPT5HO00267 1087 aaKnown RBP28.1■■■□□ 2.09
CLDND1-211ENST00000506575 URB2Q14146 1524 aaKnown RBP28.08■■■□□ 2.08
CLDND1-211ENST00000506575 DNAJC5Q9H3Z4 198 aa28.05■■■□□ 2.08
CLDND1-211ENST00000506575 ABCC8Q09428 1581 aa27.89■■■□□ 2.05
CLDND1-211ENST00000506575 TOPBP1Q92547 1522 aa27.87■■■□□ 2.05
CLDND1-211ENST00000506575 DNMBPQ6XZF7 1577 aa27.84■■■□□ 2.05
CLDND1-211ENST00000506575 IFT140Q96RY7 1462 aa27.77■■■□□ 2.04
CLDND1-211ENST00000506575 ZNF608Q9ULD9 1512 aaPredicted RBP27.64■■■□□ 2.02
CLDND1-211ENST00000506575 POLA1P09884 1462 aaPredicted RBP27.62■■■□□ 2.01
CLDND1-211ENST00000506575 TARBP1Q13395 1621 aaKnown RBP27.59■■■□□ 2.01
CLDND1-211ENST00000506575 CUX1P39880 1505 aa27.57■■■□□ 2
CLDND1-211ENST00000506575 EIF4G3O43432 1585 aaKnown RBP27.56■■■□□ 2
CLDND1-211ENST00000506575 FGD5Q6ZNL6 1462 aa27.53■■■□□ 2
CLDND1-211ENST00000506575 SOGA1O94964 1423 aa27.51■■□□□ 1.99
CLDND1-211ENST00000506575 RAD54L2Q9Y4B4 1467 aa27.5■■□□□ 1.99
CLDND1-211ENST00000506575 AQRO60306 1485 aaKnown RBP eCLIP27.46■■□□□ 1.99
CLDND1-211ENST00000506575 OSCARQ8IYS5 282 aa27.46■■□□□ 1.99
CLDND1-211ENST00000506575 WDR97A6NE52 1622 aa27.38■■□□□ 1.97
CLDND1-211ENST00000506575 TDRD9Q8NDG6 1382 aaKnown RBP27.38■■□□□ 1.97
CLDND1-211ENST00000506575 WRNQ14191 1432 aaPredicted RBP eCLIP27.33■■□□□ 1.96
CLDND1-211ENST00000506575 TOP2BQ02880 1626 aa27.3■■□□□ 1.96
CLDND1-211ENST00000506575 BIVM-ERCC5R4GMW8 1640 aa27.3■■□□□ 1.96
CLDND1-211ENST00000506575 CHD1O14646 1710 aa27.27■■□□□ 1.96
CLDND1-211ENST00000506575 SYNJ1O43426 1573 aa27.26■■□□□ 1.96
CLDND1-211ENST00000506575 FBLN2P98095 1184 aa27.25■■□□□ 1.95
CLDND1-211ENST00000506575 ABCA10Q8WWZ4 1543 aa27.24■■□□□ 1.95
CLDND1-211ENST00000506575 GRIN2BQ13224 1484 aa27.23■■□□□ 1.95
CLDND1-211ENST00000506575 SNAPC4Q5SXM2 1469 aa27.22■■□□□ 1.95
CLDND1-211ENST00000506575 GAPVD1Q14C86 1478 aa27.19■■□□□ 1.94
CLDND1-211ENST00000506575 PBRM1Q86U86 1689 aa27.18■■□□□ 1.94
CLDND1-211ENST00000506575 MAGI1Q96QZ7 1491 aaPredicted RBP27.18■■□□□ 1.94
CLDND1-211ENST00000506575 ABCA5Q8WWZ7 1642 aa27.16■■□□□ 1.94
CLDND1-211ENST00000506575 CHMP7Q8WUX9 453 aaPredicted RBP27.12■■□□□ 1.93
CLDND1-211ENST00000506575 TRIM41Q8WV44 630 aa27.08■■□□□ 1.93
CLDND1-211ENST00000506575 SYNJ2O15056 1496 aa27.07■■□□□ 1.92
CLDND1-211ENST00000506575 RIMBP3CA6NJZ7 1639 aa27.05■■□□□ 1.92
CLDND1-211ENST00000506575 RIMBP3BA6NNM3 1639 aa27.05■■□□□ 1.92
CLDND1-211ENST00000506575 RIMBP3Q9UFD9 1639 aa27.05■■□□□ 1.92
CLDND1-211ENST00000506575 ARHGEF11O15085 1522 aa27■■□□□ 1.91
CLDND1-211ENST00000506575 ERICH3Q5RHP9 1530 aa26.93■■□□□ 1.9
CLDND1-211ENST00000506575 ADAMTS12P58397 1594 aa26.92■■□□□ 1.9
CLDND1-211ENST00000506575 CLASP1Q7Z460 1538 aa26.92■■□□□ 1.9
CLDND1-211ENST00000506575 FHAD1B1AJZ9 1412 aa26.88■■□□□ 1.89
CLDND1-211ENST00000506575 GRIN2AQ12879 1464 aa26.87■■□□□ 1.89
CLDND1-211ENST00000506575 KIF27Q86VH2 1401 aa26.79■■□□□ 1.88
CLDND1-211ENST00000506575 CYB5RLQ6IPT4 315 aa26.78■■□□□ 1.88
CLDND1-211ENST00000506575 ARAP1Q96P48 1450 aa26.75■■□□□ 1.87
CLDND1-211ENST00000506575 CEP170Q5SW79 1584 aa26.74■■□□□ 1.87
CLDND1-211ENST00000506575 NUP160Q12769 1436 aa26.73■■□□□ 1.87
CLDND1-211ENST00000506575 CUL7Q14999 1698 aa26.66■■□□□ 1.86
CLDND1-211ENST00000506575 IGF1RP08069 1367 aa26.66■■□□□ 1.86
CLDND1-211ENST00000506575 SHROOM2Q13796 1616 aa26.57■■□□□ 1.84
CLDND1-211ENST00000506575 RUSC2Q8N2Y8 1516 aa26.54■■□□□ 1.84
CLDND1-211ENST00000506575 CARMIL1Q5VZK9 1371 aa26.53■■□□□ 1.84
CLDND1-211ENST00000506575 ERCC6L2Q5T890 1561 aa26.53■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms