RNA–Protein interactions for RNA: ENST00000506573.1

DDR1-258, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

TSL 4

Gene DDR1, Length 585 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-258ENST00000506573 NISCHQ9Y2I1 1504 aa38.1■■■■□ 3.69
DDR1-258ENST00000506573 CCDC180Q9P1Z9 1646 aa34.04■■■■□ 3.04
DDR1-258ENST00000506573 ABCC9O60706 1549 aa33.71■■■□□ 2.99
DDR1-258ENST00000506573 RB1CC1Q8TDY2 1594 aa32.31■■■□□ 2.76
DDR1-258ENST00000506573 NACADO15069 1562 aa32.16■■■□□ 2.74
DDR1-258ENST00000506573 DCAF8L2P0C7V8 631 aa32.15■■■□□ 2.74
DDR1-258ENST00000506573 MYO15BQ96JP2 1530 aa31.84■■■□□ 2.69
DDR1-258ENST00000506573 ZCCHC6Q5VYS8 1495 aaKnown RBP31.63■■■□□ 2.65
DDR1-258ENST00000506573 DCAF1Q9Y4B6 1507 aa31.53■■■□□ 2.64
DDR1-258ENST00000506573 PABPN1Q86U42 306 aaKnown RBP eCLIP31.45■■■□□ 2.63
DDR1-258ENST00000506573 UNC13AQ9UPW8 1703 aa31.36■■■□□ 2.61
DDR1-258ENST00000506573 DNAJC5BQ9UF47 199 aa31.22■■■□□ 2.59
DDR1-258ENST00000506573 BICRAQ9NZM4 1560 aa31.19■■■□□ 2.58
DDR1-258ENST00000506573 SCRIBQ14160 1630 aa31.02■■■□□ 2.56
DDR1-258ENST00000506573 SHROOM4Q9ULL8 1493 aa31.01■■■□□ 2.56
DDR1-258ENST00000506573 EIF4G1Q04637 1599 aaKnown RBP30.49■■■□□ 2.47
DDR1-258ENST00000506573 CC2D2AQ9P2K1 1620 aa30.44■■■□□ 2.46
DDR1-258ENST00000506573 CECR2Q9BXF3 1484 aa30.38■■■□□ 2.45
DDR1-258ENST00000506573 NCAPD3P42695 1498 aa29.67■■■□□ 2.34
DDR1-258ENST00000506573 SMARCA4P51532 1647 aa29.63■■■□□ 2.33
DDR1-258ENST00000506573 SMARCA2P51531 1590 aa29.6■■■□□ 2.33
DDR1-258ENST00000506573 BAZ1AQ9NRL2 1556 aaPredicted RBP29.6■■■□□ 2.33
DDR1-258ENST00000506573 ATAD2BQ9ULI0 1458 aa29.6■■■□□ 2.33
DDR1-258ENST00000506573 HMGXB3Q12766 1538 aa29.47■■■□□ 2.31
DDR1-258ENST00000506573 BAZ1BQ9UIG0 1483 aaKnown RBP29.39■■■□□ 2.3
DDR1-258ENST00000506573 PEG3Q9GZU2 1588 aa29.35■■■□□ 2.29
DDR1-258ENST00000506573 MROH2BQ7Z745 1585 aa29.3■■■□□ 2.28
DDR1-258ENST00000506573 ERCC6Q03468 1493 aa29.2■■■□□ 2.26
DDR1-258ENST00000506573 CUX2O14529 1486 aa29■■■□□ 2.23
DDR1-258ENST00000506573 NESP48681 1621 aa28.99■■■□□ 2.23
DDR1-258ENST00000506573 LAMC3Q9Y6N6 1575 aa28.96■■■□□ 2.23
DDR1-258ENST00000506573 WIZO95785 1651 aa28.95■■■□□ 2.22
DDR1-258ENST00000506573 RSF1Q96T23 1441 aaPredicted RBP28.86■■■□□ 2.21
DDR1-258ENST00000506573 PDS5BQ9NTI5 1447 aa28.86■■■□□ 2.21
DDR1-258ENST00000506573 CADPSQ9ULU8 1353 aa28.81■■■□□ 2.2
DDR1-258ENST00000506573 TOP2AP11388 1531 aaKnown RBP28.69■■■□□ 2.18
DDR1-258ENST00000506573 THOC2Q8NI27 1593 aaKnown RBP28.63■■■□□ 2.17
DDR1-258ENST00000506573 KIF21AQ7Z4S6 1674 aa28.62■■■□□ 2.17
DDR1-258ENST00000506573 DNAJC5Q9H3Z4 198 aa28.57■■■□□ 2.16
DDR1-258ENST00000506573 CFTRP13569 1480 aa28.52■■■□□ 2.16
DDR1-258ENST00000506573 MRC2Q9UBG0 1479 aa28.51■■■□□ 2.15
DDR1-258ENST00000506573 CEP164Q9UPV0 1460 aa28.49■■■□□ 2.15
DDR1-258ENST00000506573 FANCD2Q9BXW9 1451 aa28.46■■■□□ 2.15
DDR1-258ENST00000506573 WDR62O43379 1518 aa28.38■■■□□ 2.13
DDR1-258ENST00000506573 CCDC88BA6NC98 1476 aa28.35■■■□□ 2.13
DDR1-258ENST00000506573 PRDM2Q13029 1718 aa28.19■■■□□ 2.1
DDR1-258ENST00000506573 URB2Q14146 1524 aaKnown RBP28.13■■■□□ 2.09
DDR1-258ENST00000506573 ABCC8Q09428 1581 aa28.03■■■□□ 2.08
DDR1-258ENST00000506573 SUPT5HO00267 1087 aaKnown RBP27.93■■■□□ 2.06
DDR1-258ENST00000506573 TOPBP1Q92547 1522 aa27.92■■■□□ 2.06
DDR1-258ENST00000506573 IFT140Q96RY7 1462 aa27.92■■■□□ 2.06
DDR1-258ENST00000506573 DNMBPQ6XZF7 1577 aa27.87■■■□□ 2.05
DDR1-258ENST00000506573 OSCARQ8IYS5 282 aa27.79■■■□□ 2.04
DDR1-258ENST00000506573 ZNF608Q9ULD9 1512 aaPredicted RBP27.72■■■□□ 2.03
DDR1-258ENST00000506573 POLA1P09884 1462 aaPredicted RBP27.66■■■□□ 2.02
DDR1-258ENST00000506573 SOGA1O94964 1423 aa27.61■■■□□ 2.01
DDR1-258ENST00000506573 EIF4G3O43432 1585 aaKnown RBP27.6■■■□□ 2.01
DDR1-258ENST00000506573 TARBP1Q13395 1621 aaKnown RBP27.6■■■□□ 2.01
DDR1-258ENST00000506573 AQRO60306 1485 aaKnown RBP eCLIP27.56■■■□□ 2
DDR1-258ENST00000506573 FGD5Q6ZNL6 1462 aa27.54■■■□□ 2
DDR1-258ENST00000506573 CUX1P39880 1505 aa27.53■■■□□ 2
DDR1-258ENST00000506573 RAD54L2Q9Y4B4 1467 aa27.52■■■□□ 2
DDR1-258ENST00000506573 TRIM41Q8WV44 630 aa27.49■■□□□ 1.99
DDR1-258ENST00000506573 WDR97A6NE52 1622 aa27.48■■□□□ 1.99
DDR1-258ENST00000506573 TDRD9Q8NDG6 1382 aaKnown RBP27.47■■□□□ 1.99
DDR1-258ENST00000506573 FBLN2P98095 1184 aa27.44■■□□□ 1.98
DDR1-258ENST00000506573 GRIN2BQ13224 1484 aa27.33■■□□□ 1.97
DDR1-258ENST00000506573 CHMP7Q8WUX9 453 aaPredicted RBP27.31■■□□□ 1.96
DDR1-258ENST00000506573 WRNQ14191 1432 aaPredicted RBP eCLIP27.31■■□□□ 1.96
DDR1-258ENST00000506573 SNAPC4Q5SXM2 1469 aa27.31■■□□□ 1.96
DDR1-258ENST00000506573 MAGI1Q96QZ7 1491 aaPredicted RBP27.31■■□□□ 1.96
DDR1-258ENST00000506573 CHD1O14646 1710 aa27.3■■□□□ 1.96
DDR1-258ENST00000506573 ABCA10Q8WWZ4 1543 aa27.27■■□□□ 1.96
DDR1-258ENST00000506573 GAPVD1Q14C86 1478 aa27.27■■□□□ 1.96
DDR1-258ENST00000506573 RIMBP3CA6NJZ7 1639 aa27.23■■□□□ 1.95
DDR1-258ENST00000506573 RIMBP3BA6NNM3 1639 aa27.23■■□□□ 1.95
DDR1-258ENST00000506573 RIMBP3Q9UFD9 1639 aa27.23■■□□□ 1.95
DDR1-258ENST00000506573 TOP2BQ02880 1626 aa27.22■■□□□ 1.95
DDR1-258ENST00000506573 ARHGEF11O15085 1522 aa27.21■■□□□ 1.95
DDR1-258ENST00000506573 SYNJ2O15056 1496 aa27.19■■□□□ 1.94
DDR1-258ENST00000506573 BIVM-ERCC5R4GMW8 1640 aa27.19■■□□□ 1.94
DDR1-258ENST00000506573 SYNJ1O43426 1573 aa27.15■■□□□ 1.94
DDR1-258ENST00000506573 PBRM1Q86U86 1689 aa27.14■■□□□ 1.94
DDR1-258ENST00000506573 ABCA5Q8WWZ7 1642 aa27.14■■□□□ 1.94
DDR1-258ENST00000506573 CYB5RLQ6IPT4 315 aa27.07■■□□□ 1.92
DDR1-258ENST00000506573 CLASP1Q7Z460 1538 aa27.02■■□□□ 1.92
DDR1-258ENST00000506573 ERICH3Q5RHP9 1530 aa26.96■■□□□ 1.91
DDR1-258ENST00000506573 FHAD1B1AJZ9 1412 aa26.96■■□□□ 1.91
DDR1-258ENST00000506573 GRIN2AQ12879 1464 aa26.94■■□□□ 1.9
DDR1-258ENST00000506573 ARAP1Q96P48 1450 aa26.93■■□□□ 1.9
DDR1-258ENST00000506573 ADAMTS12P58397 1594 aa26.92■■□□□ 1.9
DDR1-258ENST00000506573 NUP160Q12769 1436 aa26.82■■□□□ 1.88
DDR1-258ENST00000506573 KIF27Q86VH2 1401 aa26.81■■□□□ 1.88
DDR1-258ENST00000506573 CEP170Q5SW79 1584 aa26.75■■□□□ 1.87
DDR1-258ENST00000506573 TRHP20396 242 aaPredicted RBP26.73■■□□□ 1.87
DDR1-258ENST00000506573 IGF1RP08069 1367 aa26.67■■□□□ 1.86
DDR1-258ENST00000506573 CUL7Q14999 1698 aa26.63■■□□□ 1.85
DDR1-258ENST00000506573 JPH4Q96JJ6 628 aa26.63■■□□□ 1.85
DDR1-258ENST00000506573 SHROOM2Q13796 1616 aa26.61■■□□□ 1.85
DDR1-258ENST00000506573 PRG4Q92954 1404 aaPredicted RBP26.58■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms