RNA–Protein interactions for RNA: ENST00000506443.5

COPS4-204, Transcript of COP9 signalosome subunit 4, humanhuman

TSL 4

Gene COPS4, Length 578 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS4-204ENST00000506443 NISCHQ9Y2I1 1504 aa23.25■■□□□ 1.31
COPS4-204ENST00000506443 AEBP2Q6ZN18 517 aaPredicted RBP22.98■■□□□ 1.27
COPS4-204ENST00000506443 CHIC1Q5VXU3 224 aa21.69■■□□□ 1.06
COPS4-204ENST00000506443 ABCC9O60706 1549 aa21.55■■□□□ 1.04
COPS4-204ENST00000506443 CCDC180Q9P1Z9 1646 aa21.05■□□□□ 0.96
COPS4-204ENST00000506443 DNAJC5BQ9UF47 199 aa20.58■□□□□ 0.89
COPS4-204ENST00000506443 RB1CC1Q8TDY2 1594 aa20.19■□□□□ 0.82
COPS4-204ENST00000506443 UNC13AQ9UPW8 1703 aa19.96■□□□□ 0.79
COPS4-204ENST00000506443 PABPN1Q86U42 306 aaKnown RBP eCLIP19.95■□□□□ 0.78
COPS4-204ENST00000506443 NACADO15069 1562 aa19.91■□□□□ 0.78
COPS4-204ENST00000506443 BICRAQ9NZM4 1560 aa19.78■□□□□ 0.76
COPS4-204ENST00000506443 DCAF8L2P0C7V8 631 aa19.73■□□□□ 0.75
COPS4-204ENST00000506443 SENP3Q9H4L4 574 aaPredicted RBP19.63■□□□□ 0.73
COPS4-204ENST00000506443 MYO15BQ96JP2 1530 aa19.43■□□□□ 0.7
COPS4-204ENST00000506443 CC2D2AQ9P2K1 1620 aa19.43■□□□□ 0.7
COPS4-204ENST00000506443 PHF23Q9BUL5 403 aaPredicted RBP19.39■□□□□ 0.69
COPS4-204ENST00000506443 CECR2Q9BXF3 1484 aa19.37■□□□□ 0.69
COPS4-204ENST00000506443 SCRIBQ14160 1630 aa19.3■□□□□ 0.68
COPS4-204ENST00000506443 EIF4G1Q04637 1599 aaKnown RBP19.26■□□□□ 0.67
COPS4-204ENST00000506443 ZCCHC6Q5VYS8 1495 aaKnown RBP19.23■□□□□ 0.67
COPS4-204ENST00000506443 SHROOM4Q9ULL8 1493 aa19.2■□□□□ 0.66
COPS4-204ENST00000506443 DCAF1Q9Y4B6 1507 aa19.08■□□□□ 0.64
COPS4-204ENST00000506443 DNAJC5Q9H3Z4 198 aa19■□□□□ 0.63
COPS4-204ENST00000506443 CUX2O14529 1486 aa18.57■□□□□ 0.56
COPS4-204ENST00000506443 ERCC6Q03468 1493 aa18.52■□□□□ 0.55
COPS4-204ENST00000506443 NESP48681 1621 aa18.45■□□□□ 0.54
COPS4-204ENST00000506443 NCAPD3P42695 1498 aa18.38■□□□□ 0.53
COPS4-204ENST00000506443 ATAD2BQ9ULI0 1458 aa18.35■□□□□ 0.53
COPS4-204ENST00000506443 FOXD1Q16676 465 aa18.34■□□□□ 0.53
COPS4-204ENST00000506443 THOC2Q8NI27 1593 aaKnown RBP18.34■□□□□ 0.53
COPS4-204ENST00000506443 SMARCA4P51532 1647 aa18.3■□□□□ 0.52
COPS4-204ENST00000506443 HMGXB3Q12766 1538 aa18.28■□□□□ 0.52
COPS4-204ENST00000506443 SMARCA2P51531 1590 aa18.24■□□□□ 0.51
COPS4-204ENST00000506443 KIF21AQ7Z4S6 1674 aa18.22■□□□□ 0.51
COPS4-204ENST00000506443 BAZ1BQ9UIG0 1483 aaKnown RBP18.14■□□□□ 0.5
COPS4-204ENST00000506443 TRIM41Q8WV44 630 aa18.12■□□□□ 0.49
COPS4-204ENST00000506443 LAMC3Q9Y6N6 1575 aa18.06■□□□□ 0.48
COPS4-204ENST00000506443 PEG3Q9GZU2 1588 aa18.04■□□□□ 0.48
COPS4-204ENST00000506443 BAZ1AQ9NRL2 1556 aaPredicted RBP18.04■□□□□ 0.48
COPS4-204ENST00000506443 MROH2BQ7Z745 1585 aa18.01■□□□□ 0.47
COPS4-204ENST00000506443 MRC2Q9UBG0 1479 aa17.89■□□□□ 0.45
COPS4-204ENST00000506443 WDR62O43379 1518 aa17.89■□□□□ 0.45
COPS4-204ENST00000506443 PDS5BQ9NTI5 1447 aa17.89■□□□□ 0.45
COPS4-204ENST00000506443 WIZO95785 1651 aa17.81■□□□□ 0.44
COPS4-204ENST00000506443 CADPSQ9ULU8 1353 aa17.79■□□□□ 0.44
COPS4-204ENST00000506443 CEP164Q9UPV0 1460 aa17.72■□□□□ 0.43
COPS4-204ENST00000506443 FANCD2Q9BXW9 1451 aa17.69■□□□□ 0.42
COPS4-204ENST00000506443 URB2Q14146 1524 aaKnown RBP17.65■□□□□ 0.42
COPS4-204ENST00000506443 RIMBP3CA6NJZ7 1639 aa17.64■□□□□ 0.41
COPS4-204ENST00000506443 RIMBP3BA6NNM3 1639 aa17.64■□□□□ 0.41
COPS4-204ENST00000506443 RIMBP3Q9UFD9 1639 aa17.64■□□□□ 0.41
COPS4-204ENST00000506443 CFTRP13569 1480 aa17.56■□□□□ 0.4
COPS4-204ENST00000506443 OSCARQ8IYS5 282 aa17.55■□□□□ 0.4
COPS4-204ENST00000506443 ZNF608Q9ULD9 1512 aaPredicted RBP17.52■□□□□ 0.4
COPS4-204ENST00000506443 ARHGEF11O15085 1522 aa17.51■□□□□ 0.39
COPS4-204ENST00000506443 PRDM2Q13029 1718 aa17.46■□□□□ 0.39
COPS4-204ENST00000506443 TOP2AP11388 1531 aaKnown RBP17.46■□□□□ 0.39
COPS4-204ENST00000506443 EIF4G3O43432 1585 aaKnown RBP17.41■□□□□ 0.38
COPS4-204ENST00000506443 RSF1Q96T23 1441 aaPredicted RBP17.4■□□□□ 0.38
COPS4-204ENST00000506443 CHD1O14646 1710 aa17.39■□□□□ 0.37
COPS4-204ENST00000506443 ARAP1Q96P48 1450 aa17.34■□□□□ 0.37
COPS4-204ENST00000506443 TOPBP1Q92547 1522 aa17.33■□□□□ 0.37
COPS4-204ENST00000506443 IFT140Q96RY7 1462 aa17.33■□□□□ 0.37
COPS4-204ENST00000506443 CYB5RLQ6IPT4 315 aa17.28■□□□□ 0.36
COPS4-204ENST00000506443 PLPPR3Q6T4P5 718 aa17.27■□□□□ 0.36
COPS4-204ENST00000506443 TARBP1Q13395 1621 aaKnown RBP17.25■□□□□ 0.35
COPS4-204ENST00000506443 CCDC88BA6NC98 1476 aa17.25■□□□□ 0.35
COPS4-204ENST00000506443 AQRO60306 1485 aaKnown RBP eCLIP17.24■□□□□ 0.35
COPS4-204ENST00000506443 DNMBPQ6XZF7 1577 aa17.22■□□□□ 0.35
COPS4-204ENST00000506443 MSH5O43196 834 aa17.2■□□□□ 0.34
COPS4-204ENST00000506443 TRHP20396 242 aaPredicted RBP17.19■□□□□ 0.34
COPS4-204ENST00000506443 POLA1P09884 1462 aaPredicted RBP17.14■□□□□ 0.33
COPS4-204ENST00000506443 RAD54L2Q9Y4B4 1467 aa17.13■□□□□ 0.33
COPS4-204ENST00000506443 FBLN2P98095 1184 aa17.11■□□□□ 0.33
COPS4-204ENST00000506443 PIAS4Q8N2W9 510 aaPredicted RBP17.11■□□□□ 0.33
COPS4-204ENST00000506443 CLASP1Q7Z460 1538 aa17.11■□□□□ 0.33
COPS4-204ENST00000506443 SNAPC4Q5SXM2 1469 aa17.07■□□□□ 0.32
COPS4-204ENST00000506443 TDRD9Q8NDG6 1382 aaKnown RBP17.05■□□□□ 0.32
COPS4-204ENST00000506443 POTEDQ86YR6 584 aa17.05■□□□□ 0.32
COPS4-204ENST00000506443 ABCC8Q09428 1581 aa17.04■□□□□ 0.32
COPS4-204ENST00000506443 PPP6R1Q9UPN7 881 aa17.04■□□□□ 0.32
COPS4-204ENST00000506443 ADRA2BP18089 450 aa16.99■□□□□ 0.31
COPS4-204ENST00000506443 FGD5Q6ZNL6 1462 aa16.99■□□□□ 0.31
COPS4-204ENST00000506443 WDR97A6NE52 1622 aa16.97■□□□□ 0.31
COPS4-204ENST00000506443 SYNJ1O43426 1573 aa16.95■□□□□ 0.3
COPS4-204ENST00000506443 CUX1P39880 1505 aa16.95■□□□□ 0.3
COPS4-204ENST00000506443 SOGA1O94964 1423 aa16.94■□□□□ 0.3
COPS4-204ENST00000506443 PBRM1Q86U86 1689 aa16.94■□□□□ 0.3
COPS4-204ENST00000506443 ERCC6L2Q5T890 1561 aa16.94■□□□□ 0.3
COPS4-204ENST00000506443 GAPVD1Q14C86 1478 aa16.89■□□□□ 0.29
COPS4-204ENST00000506443 MAGI1Q96QZ7 1491 aaPredicted RBP16.89■□□□□ 0.29
COPS4-204ENST00000506443 SYNJ2O15056 1496 aa16.86■□□□□ 0.29
COPS4-204ENST00000506443 GRIN2BQ13224 1484 aa16.86■□□□□ 0.29
COPS4-204ENST00000506443 CHMP7Q8WUX9 453 aaPredicted RBP16.83■□□□□ 0.28
COPS4-204ENST00000506443 ABCA5Q8WWZ7 1642 aa16.81■□□□□ 0.28
COPS4-204ENST00000506443 KIF13AQ9H1H9 1805 aa16.77■□□□□ 0.27
COPS4-204ENST00000506443 CEP170Q5SW79 1584 aa16.76■□□□□ 0.27
COPS4-204ENST00000506443 ADAMTS12P58397 1594 aa16.73■□□□□ 0.27
COPS4-204ENST00000506443 GRIN2AQ12879 1464 aa16.7■□□□□ 0.26
COPS4-204ENST00000506443 ABCA10Q8WWZ4 1543 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms