RNA–Protein interactions for RNA: ENST00000506419.5

CDC42SE2-209, Transcript of CDC42 small effector 2, humanhuman

TSL 3

Gene CDC42SE2, Length 458 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE2-209ENST00000506419 NISCHQ9Y2I1 1504 aa35.69■■■■□ 3.3
CDC42SE2-209ENST00000506419 ABCC9O60706 1549 aa31.75■■■□□ 2.67
CDC42SE2-209ENST00000506419 CCDC180Q9P1Z9 1646 aa31.73■■■□□ 2.67
CDC42SE2-209ENST00000506419 DCAF8L2P0C7V8 631 aa30.2■■■□□ 2.43
CDC42SE2-209ENST00000506419 RB1CC1Q8TDY2 1594 aa30.19■■■□□ 2.42
CDC42SE2-209ENST00000506419 NACADO15069 1562 aa30.07■■■□□ 2.4
CDC42SE2-209ENST00000506419 DNAJC5BQ9UF47 199 aa29.79■■■□□ 2.36
CDC42SE2-209ENST00000506419 MYO15BQ96JP2 1530 aa29.73■■■□□ 2.35
CDC42SE2-209ENST00000506419 PABPN1Q86U42 306 aaKnown RBP eCLIP29.73■■■□□ 2.35
CDC42SE2-209ENST00000506419 ZCCHC6Q5VYS8 1495 aaKnown RBP29.59■■■□□ 2.33
CDC42SE2-209ENST00000506419 DCAF1Q9Y4B6 1507 aa29.44■■■□□ 2.3
CDC42SE2-209ENST00000506419 UNC13AQ9UPW8 1703 aa29.43■■■□□ 2.3
CDC42SE2-209ENST00000506419 BICRAQ9NZM4 1560 aa29.39■■■□□ 2.29
CDC42SE2-209ENST00000506419 SCRIBQ14160 1630 aa29.05■■■□□ 2.24
CDC42SE2-209ENST00000506419 SHROOM4Q9ULL8 1493 aa28.89■■■□□ 2.22
CDC42SE2-209ENST00000506419 CC2D2AQ9P2K1 1620 aa28.61■■■□□ 2.17
CDC42SE2-209ENST00000506419 EIF4G1Q04637 1599 aaKnown RBP28.61■■■□□ 2.17
CDC42SE2-209ENST00000506419 CECR2Q9BXF3 1484 aa28.56■■■□□ 2.16
CDC42SE2-209ENST00000506419 NCAPD3P42695 1498 aa27.85■■■□□ 2.05
CDC42SE2-209ENST00000506419 ATAD2BQ9ULI0 1458 aa27.8■■■□□ 2.04
CDC42SE2-209ENST00000506419 SMARCA4P51532 1647 aa27.72■■■□□ 2.03
CDC42SE2-209ENST00000506419 SMARCA2P51531 1590 aa27.62■■■□□ 2.01
CDC42SE2-209ENST00000506419 BAZ1AQ9NRL2 1556 aaPredicted RBP27.62■■■□□ 2.01
CDC42SE2-209ENST00000506419 HMGXB3Q12766 1538 aa27.54■■■□□ 2
CDC42SE2-209ENST00000506419 MROH2BQ7Z745 1585 aa27.54■■■□□ 2
CDC42SE2-209ENST00000506419 BAZ1BQ9UIG0 1483 aaKnown RBP27.47■■□□□ 1.99
CDC42SE2-209ENST00000506419 PEG3Q9GZU2 1588 aa27.45■■□□□ 1.99
CDC42SE2-209ENST00000506419 NESP48681 1621 aa27.36■■□□□ 1.97
CDC42SE2-209ENST00000506419 ERCC6Q03468 1493 aa27.32■■□□□ 1.96
CDC42SE2-209ENST00000506419 CUX2O14529 1486 aa27.19■■□□□ 1.94
CDC42SE2-209ENST00000506419 WIZO95785 1651 aa27.15■■□□□ 1.94
CDC42SE2-209ENST00000506419 DNAJC5Q9H3Z4 198 aa27.11■■□□□ 1.93
CDC42SE2-209ENST00000506419 RSF1Q96T23 1441 aaPredicted RBP27.09■■□□□ 1.93
CDC42SE2-209ENST00000506419 LAMC3Q9Y6N6 1575 aa27.06■■□□□ 1.92
CDC42SE2-209ENST00000506419 CADPSQ9ULU8 1353 aa27.05■■□□□ 1.92
CDC42SE2-209ENST00000506419 PDS5BQ9NTI5 1447 aa26.99■■□□□ 1.91
CDC42SE2-209ENST00000506419 THOC2Q8NI27 1593 aaKnown RBP26.88■■□□□ 1.89
CDC42SE2-209ENST00000506419 KIF21AQ7Z4S6 1674 aa26.84■■□□□ 1.89
CDC42SE2-209ENST00000506419 TOP2AP11388 1531 aaKnown RBP26.8■■□□□ 1.88
CDC42SE2-209ENST00000506419 CFTRP13569 1480 aa26.74■■□□□ 1.87
CDC42SE2-209ENST00000506419 MRC2Q9UBG0 1479 aa26.71■■□□□ 1.87
CDC42SE2-209ENST00000506419 FANCD2Q9BXW9 1451 aa26.68■■□□□ 1.86
CDC42SE2-209ENST00000506419 CEP164Q9UPV0 1460 aa26.63■■□□□ 1.85
CDC42SE2-209ENST00000506419 CCDC88BA6NC98 1476 aa26.62■■□□□ 1.85
CDC42SE2-209ENST00000506419 WDR62O43379 1518 aa26.6■■□□□ 1.85
CDC42SE2-209ENST00000506419 URB2Q14146 1524 aaKnown RBP26.46■■□□□ 1.83
CDC42SE2-209ENST00000506419 PRDM2Q13029 1718 aa26.21■■□□□ 1.79
CDC42SE2-209ENST00000506419 TOPBP1Q92547 1522 aa26.19■■□□□ 1.78
CDC42SE2-209ENST00000506419 SUPT5HO00267 1087 aaKnown RBP26.14■■□□□ 1.78
CDC42SE2-209ENST00000506419 OSCARQ8IYS5 282 aa26.14■■□□□ 1.78
CDC42SE2-209ENST00000506419 IFT140Q96RY7 1462 aa26.13■■□□□ 1.77
CDC42SE2-209ENST00000506419 ZNF608Q9ULD9 1512 aaPredicted RBP26.13■■□□□ 1.77
CDC42SE2-209ENST00000506419 ABCC8Q09428 1581 aa26.11■■□□□ 1.77
CDC42SE2-209ENST00000506419 DNMBPQ6XZF7 1577 aa26.04■■□□□ 1.76
CDC42SE2-209ENST00000506419 TRIM41Q8WV44 630 aa25.99■■□□□ 1.75
CDC42SE2-209ENST00000506419 AQRO60306 1485 aaKnown RBP eCLIP25.95■■□□□ 1.74
CDC42SE2-209ENST00000506419 POLA1P09884 1462 aaPredicted RBP25.94■■□□□ 1.74
CDC42SE2-209ENST00000506419 RAD54L2Q9Y4B4 1467 aa25.91■■□□□ 1.74
CDC42SE2-209ENST00000506419 TARBP1Q13395 1621 aaKnown RBP25.9■■□□□ 1.74
CDC42SE2-209ENST00000506419 SOGA1O94964 1423 aa25.89■■□□□ 1.74
CDC42SE2-209ENST00000506419 TDRD9Q8NDG6 1382 aaKnown RBP25.85■■□□□ 1.73
CDC42SE2-209ENST00000506419 EIF4G3O43432 1585 aaKnown RBP25.84■■□□□ 1.73
CDC42SE2-209ENST00000506419 CUX1P39880 1505 aa25.83■■□□□ 1.73
CDC42SE2-209ENST00000506419 FGD5Q6ZNL6 1462 aa25.8■■□□□ 1.72
CDC42SE2-209ENST00000506419 FBLN2P98095 1184 aa25.76■■□□□ 1.71
CDC42SE2-209ENST00000506419 RIMBP3CA6NJZ7 1639 aa25.61■■□□□ 1.69
CDC42SE2-209ENST00000506419 RIMBP3BA6NNM3 1639 aa25.61■■□□□ 1.69
CDC42SE2-209ENST00000506419 RIMBP3Q9UFD9 1639 aa25.61■■□□□ 1.69
CDC42SE2-209ENST00000506419 SNAPC4Q5SXM2 1469 aa25.6■■□□□ 1.69
CDC42SE2-209ENST00000506419 ARHGEF11O15085 1522 aa25.59■■□□□ 1.69
CDC42SE2-209ENST00000506419 CHMP7Q8WUX9 453 aaPredicted RBP25.59■■□□□ 1.69
CDC42SE2-209ENST00000506419 CHD1O14646 1710 aa25.57■■□□□ 1.68
CDC42SE2-209ENST00000506419 GRIN2BQ13224 1484 aa25.57■■□□□ 1.68
CDC42SE2-209ENST00000506419 CYB5RLQ6IPT4 315 aa25.55■■□□□ 1.68
CDC42SE2-209ENST00000506419 WDR97A6NE52 1622 aa25.55■■□□□ 1.68
CDC42SE2-209ENST00000506419 GAPVD1Q14C86 1478 aa25.53■■□□□ 1.68
CDC42SE2-209ENST00000506419 ABCA10Q8WWZ4 1543 aa25.53■■□□□ 1.68
CDC42SE2-209ENST00000506419 MAGI1Q96QZ7 1491 aaPredicted RBP25.51■■□□□ 1.67
CDC42SE2-209ENST00000506419 WRNQ14191 1432 aaPredicted RBP eCLIP25.49■■□□□ 1.67
CDC42SE2-209ENST00000506419 SYNJ2O15056 1496 aa25.44■■□□□ 1.66
CDC42SE2-209ENST00000506419 SYNJ1O43426 1573 aa25.42■■□□□ 1.66
CDC42SE2-209ENST00000506419 TOP2BQ02880 1626 aa25.41■■□□□ 1.66
CDC42SE2-209ENST00000506419 ARAP1Q96P48 1450 aa25.39■■□□□ 1.65
CDC42SE2-209ENST00000506419 ABCA5Q8WWZ7 1642 aa25.38■■□□□ 1.65
CDC42SE2-209ENST00000506419 CLASP1Q7Z460 1538 aa25.37■■□□□ 1.65
CDC42SE2-209ENST00000506419 BIVM-ERCC5R4GMW8 1640 aa25.37■■□□□ 1.65
CDC42SE2-209ENST00000506419 PBRM1Q86U86 1689 aa25.32■■□□□ 1.64
CDC42SE2-209ENST00000506419 GRIN2AQ12879 1464 aa25.23■■□□□ 1.63
CDC42SE2-209ENST00000506419 FHAD1B1AJZ9 1412 aa25.21■■□□□ 1.63
CDC42SE2-209ENST00000506419 NUP160Q12769 1436 aa25.17■■□□□ 1.62
CDC42SE2-209ENST00000506419 ADAMTS12P58397 1594 aa25.17■■□□□ 1.62
CDC42SE2-209ENST00000506419 ERICH3Q5RHP9 1530 aa25.17■■□□□ 1.62
CDC42SE2-209ENST00000506419 TRHP20396 242 aaPredicted RBP25.14■■□□□ 1.62
CDC42SE2-209ENST00000506419 CEP170Q5SW79 1584 aa25.11■■□□□ 1.61
CDC42SE2-209ENST00000506419 IGF1RP08069 1367 aa25.08■■□□□ 1.61
CDC42SE2-209ENST00000506419 ERCC6L2Q5T890 1561 aa25.07■■□□□ 1.6
CDC42SE2-209ENST00000506419 JPH4Q96JJ6 628 aa25.04■■□□□ 1.6
CDC42SE2-209ENST00000506419 KIF27Q86VH2 1401 aa24.99■■□□□ 1.59
CDC42SE2-209ENST00000506419 PRG4Q92954 1404 aaPredicted RBP24.94■■□□□ 1.58
CDC42SE2-209ENST00000506419 SHROOM2Q13796 1616 aa24.94■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms