RNA–Protein interactions for RNA: ENST00000506205.1

PDPN-207, Transcript of podoplanin, humanhuman

TSL 4

Gene PDPN, Length 476 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-207ENST00000506205 NISCHQ9Y2I1 1504 aa26.44■■□□□ 1.82
PDPN-207ENST00000506205 CCDC180Q9P1Z9 1646 aa23.48■■□□□ 1.35
PDPN-207ENST00000506205 ABCC9O60706 1549 aa23.18■■□□□ 1.3
PDPN-207ENST00000506205 RB1CC1Q8TDY2 1594 aa22.24■■□□□ 1.15
PDPN-207ENST00000506205 DCAF8L2P0C7V8 631 aa22.21■■□□□ 1.15
PDPN-207ENST00000506205 NACADO15069 1562 aa22.21■■□□□ 1.15
PDPN-207ENST00000506205 MYO15BQ96JP2 1530 aa22.07■■□□□ 1.12
PDPN-207ENST00000506205 ZCCHC6Q5VYS8 1495 aaKnown RBP21.97■■□□□ 1.11
PDPN-207ENST00000506205 DCAF1Q9Y4B6 1507 aa21.9■■□□□ 1.1
PDPN-207ENST00000506205 PABPN1Q86U42 306 aaKnown RBP eCLIP21.7■■□□□ 1.06
PDPN-207ENST00000506205 UNC13AQ9UPW8 1703 aa21.55■■□□□ 1.04
PDPN-207ENST00000506205 BICRAQ9NZM4 1560 aa21.55■■□□□ 1.04
PDPN-207ENST00000506205 DNAJC5BQ9UF47 199 aa21.51■■□□□ 1.03
PDPN-207ENST00000506205 SCRIBQ14160 1630 aa21.4■■□□□ 1.02
PDPN-207ENST00000506205 SHROOM4Q9ULL8 1493 aa21.38■■□□□ 1.01
PDPN-207ENST00000506205 EIF4G1Q04637 1599 aaKnown RBP21■□□□□ 0.95
PDPN-207ENST00000506205 CC2D2AQ9P2K1 1620 aa20.93■□□□□ 0.94
PDPN-207ENST00000506205 CECR2Q9BXF3 1484 aa20.88■□□□□ 0.93
PDPN-207ENST00000506205 NCAPD3P42695 1498 aa20.56■□□□□ 0.88
PDPN-207ENST00000506205 BAZ1AQ9NRL2 1556 aaPredicted RBP20.5■□□□□ 0.87
PDPN-207ENST00000506205 ATAD2BQ9ULI0 1458 aa20.5■□□□□ 0.87
PDPN-207ENST00000506205 SMARCA4P51532 1647 aa20.49■□□□□ 0.87
PDPN-207ENST00000506205 SMARCA2P51531 1590 aa20.43■□□□□ 0.86
PDPN-207ENST00000506205 MROH2BQ7Z745 1585 aa20.35■□□□□ 0.85
PDPN-207ENST00000506205 HMGXB3Q12766 1538 aa20.35■□□□□ 0.85
PDPN-207ENST00000506205 PEG3Q9GZU2 1588 aa20.34■□□□□ 0.85
PDPN-207ENST00000506205 BAZ1BQ9UIG0 1483 aaKnown RBP20.28■□□□□ 0.84
PDPN-207ENST00000506205 RSF1Q96T23 1441 aaPredicted RBP20.12■□□□□ 0.81
PDPN-207ENST00000506205 WIZO95785 1651 aa20.07■□□□□ 0.8
PDPN-207ENST00000506205 NESP48681 1621 aa20.01■□□□□ 0.79
PDPN-207ENST00000506205 ERCC6Q03468 1493 aa20■□□□□ 0.79
PDPN-207ENST00000506205 LAMC3Q9Y6N6 1575 aa19.95■□□□□ 0.78
PDPN-207ENST00000506205 CADPSQ9ULU8 1353 aa19.95■□□□□ 0.78
PDPN-207ENST00000506205 TOP2AP11388 1531 aaKnown RBP19.89■□□□□ 0.77
PDPN-207ENST00000506205 PDS5BQ9NTI5 1447 aa19.89■□□□□ 0.77
PDPN-207ENST00000506205 CUX2O14529 1486 aa19.88■□□□□ 0.77
PDPN-207ENST00000506205 CFTRP13569 1480 aa19.77■□□□□ 0.76
PDPN-207ENST00000506205 CCDC88BA6NC98 1476 aa19.71■□□□□ 0.75
PDPN-207ENST00000506205 THOC2Q8NI27 1593 aaKnown RBP19.68■□□□□ 0.74
PDPN-207ENST00000506205 FANCD2Q9BXW9 1451 aa19.66■□□□□ 0.74
PDPN-207ENST00000506205 KIF21AQ7Z4S6 1674 aa19.65■□□□□ 0.74
PDPN-207ENST00000506205 MRC2Q9UBG0 1479 aa19.64■□□□□ 0.73
PDPN-207ENST00000506205 CEP164Q9UPV0 1460 aa19.63■□□□□ 0.73
PDPN-207ENST00000506205 WDR62O43379 1518 aa19.56■□□□□ 0.72
PDPN-207ENST00000506205 DNAJC5Q9H3Z4 198 aa19.54■□□□□ 0.72
PDPN-207ENST00000506205 SUPT5HO00267 1087 aaKnown RBP19.5■□□□□ 0.71
PDPN-207ENST00000506205 URB2Q14146 1524 aaKnown RBP19.45■□□□□ 0.7
PDPN-207ENST00000506205 PRDM2Q13029 1718 aa19.38■□□□□ 0.69
PDPN-207ENST00000506205 ABCC8Q09428 1581 aa19.36■□□□□ 0.69
PDPN-207ENST00000506205 TOPBP1Q92547 1522 aa19.3■□□□□ 0.68
PDPN-207ENST00000506205 IFT140Q96RY7 1462 aa19.26■□□□□ 0.67
PDPN-207ENST00000506205 DNMBPQ6XZF7 1577 aa19.24■□□□□ 0.67
PDPN-207ENST00000506205 ZNF608Q9ULD9 1512 aaPredicted RBP19.15■□□□□ 0.66
PDPN-207ENST00000506205 POLA1P09884 1462 aaPredicted RBP19.14■□□□□ 0.65
PDPN-207ENST00000506205 SOGA1O94964 1423 aa19.12■□□□□ 0.65
PDPN-207ENST00000506205 OSCARQ8IYS5 282 aa19.12■□□□□ 0.65
PDPN-207ENST00000506205 CUX1P39880 1505 aa19.09■□□□□ 0.65
PDPN-207ENST00000506205 TARBP1Q13395 1621 aaKnown RBP19.08■□□□□ 0.65
PDPN-207ENST00000506205 FGD5Q6ZNL6 1462 aa19.06■□□□□ 0.64
PDPN-207ENST00000506205 RAD54L2Q9Y4B4 1467 aa19.06■□□□□ 0.64
PDPN-207ENST00000506205 AQRO60306 1485 aaKnown RBP eCLIP19.05■□□□□ 0.64
PDPN-207ENST00000506205 TDRD9Q8NDG6 1382 aaKnown RBP19.01■□□□□ 0.63
PDPN-207ENST00000506205 EIF4G3O43432 1585 aaKnown RBP18.99■□□□□ 0.63
PDPN-207ENST00000506205 WRNQ14191 1432 aaPredicted RBP eCLIP18.96■□□□□ 0.63
PDPN-207ENST00000506205 WDR97A6NE52 1622 aa18.94■□□□□ 0.62
PDPN-207ENST00000506205 ABCA10Q8WWZ4 1543 aa18.9■□□□□ 0.62
PDPN-207ENST00000506205 GRIN2BQ13224 1484 aa18.89■□□□□ 0.61
PDPN-207ENST00000506205 FBLN2P98095 1184 aa18.88■□□□□ 0.61
PDPN-207ENST00000506205 TOP2BQ02880 1626 aa18.88■□□□□ 0.61
PDPN-207ENST00000506205 GAPVD1Q14C86 1478 aa18.85■□□□□ 0.61
PDPN-207ENST00000506205 CHMP7Q8WUX9 453 aaPredicted RBP18.84■□□□□ 0.61
PDPN-207ENST00000506205 BIVM-ERCC5R4GMW8 1640 aa18.84■□□□□ 0.61
PDPN-207ENST00000506205 SYNJ1O43426 1573 aa18.84■□□□□ 0.61
PDPN-207ENST00000506205 MAGI1Q96QZ7 1491 aaPredicted RBP18.84■□□□□ 0.61
PDPN-207ENST00000506205 SNAPC4Q5SXM2 1469 aa18.83■□□□□ 0.6
PDPN-207ENST00000506205 SYNJ2O15056 1496 aa18.77■□□□□ 0.59
PDPN-207ENST00000506205 ABCA5Q8WWZ7 1642 aa18.76■□□□□ 0.59
PDPN-207ENST00000506205 TRIM41Q8WV44 630 aa18.74■□□□□ 0.59
PDPN-207ENST00000506205 CHD1O14646 1710 aa18.72■□□□□ 0.59
PDPN-207ENST00000506205 ARHGEF11O15085 1522 aa18.68■□□□□ 0.58
PDPN-207ENST00000506205 PBRM1Q86U86 1689 aa18.66■□□□□ 0.58
PDPN-207ENST00000506205 ERICH3Q5RHP9 1530 aa18.66■□□□□ 0.58
PDPN-207ENST00000506205 FHAD1B1AJZ9 1412 aa18.66■□□□□ 0.58
PDPN-207ENST00000506205 RIMBP3CA6NJZ7 1639 aa18.65■□□□□ 0.58
PDPN-207ENST00000506205 RIMBP3BA6NNM3 1639 aa18.65■□□□□ 0.58
PDPN-207ENST00000506205 RIMBP3Q9UFD9 1639 aa18.65■□□□□ 0.58
PDPN-207ENST00000506205 CLASP1Q7Z460 1538 aa18.63■□□□□ 0.57
PDPN-207ENST00000506205 GRIN2AQ12879 1464 aa18.61■□□□□ 0.57
PDPN-207ENST00000506205 CYB5RLQ6IPT4 315 aa18.61■□□□□ 0.57
PDPN-207ENST00000506205 KIF27Q86VH2 1401 aa18.59■□□□□ 0.57
PDPN-207ENST00000506205 ADAMTS12P58397 1594 aa18.59■□□□□ 0.57
PDPN-207ENST00000506205 IGF1RP08069 1367 aa18.58■□□□□ 0.57
PDPN-207ENST00000506205 NUP160Q12769 1436 aa18.57■□□□□ 0.56
PDPN-207ENST00000506205 ARAP1Q96P48 1450 aa18.52■□□□□ 0.56
PDPN-207ENST00000506205 CEP170Q5SW79 1584 aa18.48■□□□□ 0.55
PDPN-207ENST00000506205 JPH4Q96JJ6 628 aa18.45■□□□□ 0.54
PDPN-207ENST00000506205 CARMIL1Q5VZK9 1371 aa18.44■□□□□ 0.54
PDPN-207ENST00000506205 CUL7Q14999 1698 aa18.39■□□□□ 0.53
PDPN-207ENST00000506205 KIAA0586Q9BVV6 1533 aa18.37■□□□□ 0.53
PDPN-207ENST00000506205 SHROOM2Q13796 1616 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms