RNA–Protein interactions for RNA: ENST00000506165.1

APBB3-211, Transcript of amyloid beta precursor protein binding family B member 3, humanhuman

TSL 2

Gene APBB3, Length 560 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APBB3-211ENST00000506165 NISCHQ9Y2I1 1504 aa44.21■■■■■ 4.67
APBB3-211ENST00000506165 ABCC9O60706 1549 aa40.19■■■■■ 4.02
APBB3-211ENST00000506165 CCDC180Q9P1Z9 1646 aa39.98■■■■□ 3.99
APBB3-211ENST00000506165 DNAJC5BQ9UF47 199 aa38.17■■■■□ 3.7
APBB3-211ENST00000506165 RB1CC1Q8TDY2 1594 aa38.14■■■■□ 3.7
APBB3-211ENST00000506165 NACADO15069 1562 aa37.8■■■■□ 3.64
APBB3-211ENST00000506165 UNC13AQ9UPW8 1703 aa37.56■■■■□ 3.6
APBB3-211ENST00000506165 PABPN1Q86U42 306 aaKnown RBP eCLIP37.27■■■■□ 3.56
APBB3-211ENST00000506165 BICRAQ9NZM4 1560 aa37.19■■■■□ 3.54
APBB3-211ENST00000506165 MYO15BQ96JP2 1530 aa37.19■■■■□ 3.54
APBB3-211ENST00000506165 DCAF8L2P0C7V8 631 aa37.15■■■■□ 3.54
APBB3-211ENST00000506165 ZCCHC6Q5VYS8 1495 aaKnown RBP36.56■■■■□ 3.44
APBB3-211ENST00000506165 DCAF1Q9Y4B6 1507 aa36.54■■■■□ 3.44
APBB3-211ENST00000506165 SHROOM4Q9ULL8 1493 aa36.54■■■■□ 3.44
APBB3-211ENST00000506165 CC2D2AQ9P2K1 1620 aa36.41■■■■□ 3.42
APBB3-211ENST00000506165 CECR2Q9BXF3 1484 aa36.26■■■■□ 3.4
APBB3-211ENST00000506165 SCRIBQ14160 1630 aa36.26■■■■□ 3.39
APBB3-211ENST00000506165 EIF4G1Q04637 1599 aaKnown RBP36.21■■■■□ 3.39
APBB3-211ENST00000506165 DNAJC5Q9H3Z4 198 aa35.31■■■■□ 3.24
APBB3-211ENST00000506165 NCAPD3P42695 1498 aa34.88■■■■□ 3.17
APBB3-211ENST00000506165 CUX2O14529 1486 aa34.87■■■■□ 3.17
APBB3-211ENST00000506165 ATAD2BQ9ULI0 1458 aa34.71■■■■□ 3.15
APBB3-211ENST00000506165 ERCC6Q03468 1493 aa34.65■■■■□ 3.14
APBB3-211ENST00000506165 SMARCA4P51532 1647 aa34.63■■■■□ 3.13
APBB3-211ENST00000506165 HMGXB3Q12766 1538 aa34.62■■■■□ 3.13
APBB3-211ENST00000506165 SMARCA2P51531 1590 aa34.57■■■■□ 3.12
APBB3-211ENST00000506165 NESP48681 1621 aa34.47■■■■□ 3.11
APBB3-211ENST00000506165 PEG3Q9GZU2 1588 aa34.35■■■■□ 3.09
APBB3-211ENST00000506165 THOC2Q8NI27 1593 aaKnown RBP34.32■■■■□ 3.09
APBB3-211ENST00000506165 BAZ1AQ9NRL2 1556 aaPredicted RBP34.31■■■■□ 3.08
APBB3-211ENST00000506165 BAZ1BQ9UIG0 1483 aaKnown RBP34.27■■■■□ 3.08
APBB3-211ENST00000506165 LAMC3Q9Y6N6 1575 aa34.19■■■■□ 3.06
APBB3-211ENST00000506165 KIF21AQ7Z4S6 1674 aa34.15■■■■□ 3.06
APBB3-211ENST00000506165 MROH2BQ7Z745 1585 aa34.06■■■■□ 3.04
APBB3-211ENST00000506165 PDS5BQ9NTI5 1447 aa33.87■■■■□ 3.01
APBB3-211ENST00000506165 CADPSQ9ULU8 1353 aa33.72■■■□□ 2.99
APBB3-211ENST00000506165 WDR62O43379 1518 aa33.69■■■□□ 2.98
APBB3-211ENST00000506165 WIZO95785 1651 aa33.68■■■□□ 2.98
APBB3-211ENST00000506165 MRC2Q9UBG0 1479 aa33.66■■■□□ 2.98
APBB3-211ENST00000506165 CEP164Q9UPV0 1460 aa33.42■■■□□ 2.94
APBB3-211ENST00000506165 TRIM41Q8WV44 630 aa33.41■■■□□ 2.94
APBB3-211ENST00000506165 FANCD2Q9BXW9 1451 aa33.36■■■□□ 2.93
APBB3-211ENST00000506165 CFTRP13569 1480 aa33.32■■■□□ 2.92
APBB3-211ENST00000506165 URB2Q14146 1524 aaKnown RBP33.18■■■□□ 2.9
APBB3-211ENST00000506165 PRDM2Q13029 1718 aa33.17■■■□□ 2.9
APBB3-211ENST00000506165 TOP2AP11388 1531 aaKnown RBP33.17■■■□□ 2.9
APBB3-211ENST00000506165 RSF1Q96T23 1441 aaPredicted RBP33.14■■■□□ 2.9
APBB3-211ENST00000506165 OSCARQ8IYS5 282 aa33.06■■■□□ 2.88
APBB3-211ENST00000506165 RIMBP3CA6NJZ7 1639 aa32.91■■■□□ 2.86
APBB3-211ENST00000506165 RIMBP3BA6NNM3 1639 aa32.91■■■□□ 2.86
APBB3-211ENST00000506165 RIMBP3Q9UFD9 1639 aa32.91■■■□□ 2.86
APBB3-211ENST00000506165 ZNF608Q9ULD9 1512 aaPredicted RBP32.82■■■□□ 2.85
APBB3-211ENST00000506165 IFT140Q96RY7 1462 aa32.78■■■□□ 2.84
APBB3-211ENST00000506165 CCDC88BA6NC98 1476 aa32.76■■■□□ 2.84
APBB3-211ENST00000506165 TOPBP1Q92547 1522 aa32.72■■■□□ 2.83
APBB3-211ENST00000506165 ARHGEF11O15085 1522 aa32.68■■■□□ 2.82
APBB3-211ENST00000506165 EIF4G3O43432 1585 aaKnown RBP32.67■■■□□ 2.82
APBB3-211ENST00000506165 CHD1O14646 1710 aa32.59■■■□□ 2.81
APBB3-211ENST00000506165 DNMBPQ6XZF7 1577 aa32.58■■■□□ 2.81
APBB3-211ENST00000506165 TARBP1Q13395 1621 aaKnown RBP32.58■■■□□ 2.81
APBB3-211ENST00000506165 ABCC8Q09428 1581 aa32.58■■■□□ 2.81
APBB3-211ENST00000506165 AQRO60306 1485 aaKnown RBP eCLIP32.42■■■□□ 2.784e-6■■■■■ 31
APBB3-211ENST00000506165 POLA1P09884 1462 aaPredicted RBP32.36■■■□□ 2.77
APBB3-211ENST00000506165 ARAP1Q96P48 1450 aa32.35■■■□□ 2.77
APBB3-211ENST00000506165 CYB5RLQ6IPT4 315 aa32.3■■■□□ 2.76
APBB3-211ENST00000506165 RAD54L2Q9Y4B4 1467 aa32.22■■■□□ 2.75
APBB3-211ENST00000506165 WDR97A6NE52 1622 aa32.18■■■□□ 2.74
APBB3-211ENST00000506165 CLASP1Q7Z460 1538 aa32.16■■■□□ 2.74
APBB3-211ENST00000506165 SOGA1O94964 1423 aa32.11■■■□□ 2.73
APBB3-211ENST00000506165 TDRD9Q8NDG6 1382 aaKnown RBP32.09■■■□□ 2.73
APBB3-211ENST00000506165 FBLN2P98095 1184 aa32.09■■■□□ 2.73
APBB3-211ENST00000506165 SNAPC4Q5SXM2 1469 aa32.08■■■□□ 2.73
APBB3-211ENST00000506165 FGD5Q6ZNL6 1462 aa32.07■■■□□ 2.72
APBB3-211ENST00000506165 CUX1P39880 1505 aa32.03■■■□□ 2.72
APBB3-211ENST00000506165 TRHP20396 242 aaPredicted RBP32■■■□□ 2.71
APBB3-211ENST00000506165 SYNJ1O43426 1573 aa31.99■■■□□ 2.71
APBB3-211ENST00000506165 MAGI1Q96QZ7 1491 aaPredicted RBP31.99■■■□□ 2.71
APBB3-211ENST00000506165 PBRM1Q86U86 1689 aa31.94■■■□□ 2.7
APBB3-211ENST00000506165 GRIN2BQ13224 1484 aa31.91■■■□□ 2.7
APBB3-211ENST00000506165 SYNJ2O15056 1496 aa31.89■■■□□ 2.7
APBB3-211ENST00000506165 CHMP7Q8WUX9 453 aaPredicted RBP31.84■■■□□ 2.69
APBB3-211ENST00000506165 ABCA5Q8WWZ7 1642 aa31.8■■■□□ 2.68
APBB3-211ENST00000506165 GAPVD1Q14C86 1478 aa31.75■■■□□ 2.67
APBB3-211ENST00000506165 ABCA10Q8WWZ4 1543 aa31.71■■■□□ 2.67
APBB3-211ENST00000506165 ERCC6L2Q5T890 1561 aa31.61■■■□□ 2.65
APBB3-211ENST00000506165 GRIN2AQ12879 1464 aa31.54■■■□□ 2.64
APBB3-211ENST00000506165 ADAMTS12P58397 1594 aa31.54■■■□□ 2.64
APBB3-211ENST00000506165 CEP170Q5SW79 1584 aa31.52■■■□□ 2.64
APBB3-211ENST00000506165 SHROOM2Q13796 1616 aa31.52■■■□□ 2.64
APBB3-211ENST00000506165 BIVM-ERCC5R4GMW8 1640 aa31.49■■■□□ 2.63
APBB3-211ENST00000506165 NUP160Q12769 1436 aa31.49■■■□□ 2.63
APBB3-211ENST00000506165 TOP2BQ02880 1626 aa31.42■■■□□ 2.62
APBB3-211ENST00000506165 KIF13AQ9H1H9 1805 aa31.41■■■□□ 2.62
APBB3-211ENST00000506165 WRNQ14191 1432 aaPredicted RBP eCLIP31.38■■■□□ 2.61
APBB3-211ENST00000506165 AEBP2Q6ZN18 517 aaPredicted RBP31.34■■■□□ 2.61
APBB3-211ENST00000506165 FHAD1B1AJZ9 1412 aa31.32■■■□□ 2.6
APBB3-211ENST00000506165 ERICH3Q5RHP9 1530 aa31.3■■■□□ 2.6
APBB3-211ENST00000506165 RUSC2Q8N2Y8 1516 aa31.13■■■□□ 2.57
APBB3-211ENST00000506165 PRG4Q92954 1404 aaPredicted RBP31.12■■■□□ 2.57
APBB3-211ENST00000506165 SUPT5HO00267 1087 aaKnown RBP31.11■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms