RNA–Protein interactions for RNA: ENST00000505944.5

NR1I3-221, Transcript of nuclear receptor subfamily 1 group I member 3, humanhuman

TSL 1 (best)

Gene NR1I3, Length 865 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1I3-221ENST00000505944 AEBP2Q6ZN18 517 aaPredicted RBP17.04■□□□□ 0.32
NR1I3-221ENST00000505944 NISCHQ9Y2I1 1504 aa16.98■□□□□ 0.31
NR1I3-221ENST00000505944 CHIC1Q5VXU3 224 aa16.38■□□□□ 0.21
NR1I3-221ENST00000505944 ABCC9O60706 1549 aa15.53■□□□□ 0.08
NR1I3-221ENST00000505944 CCDC180Q9P1Z9 1646 aa15.43■□□□□ 0.06
NR1I3-221ENST00000505944 RB1CC1Q8TDY2 1594 aa14.81□□□□□ -0.04
NR1I3-221ENST00000505944 DNAJC5BQ9UF47 199 aa14.73□□□□□ -0.05
NR1I3-221ENST00000505944 NACADO15069 1562 aa14.66□□□□□ -0.06
NR1I3-221ENST00000505944 SENP3Q9H4L4 574 aaPredicted RBP14.62□□□□□ -0.07
NR1I3-221ENST00000505944 PHF23Q9BUL5 403 aaPredicted RBP14.45□□□□□ -0.1
NR1I3-221ENST00000505944 MYO15BQ96JP2 1530 aa14.44□□□□□ -0.1
NR1I3-221ENST00000505944 UNC13AQ9UPW8 1703 aa14.43□□□□□ -0.1
NR1I3-221ENST00000505944 PABPN1Q86U42 306 aaKnown RBP eCLIP14.37□□□□□ -0.11
NR1I3-221ENST00000505944 DCAF8L2P0C7V8 631 aa14.34□□□□□ -0.11
NR1I3-221ENST00000505944 SHROOM4Q9ULL8 1493 aa14.29□□□□□ -0.12
NR1I3-221ENST00000505944 BICRAQ9NZM4 1560 aa14.27□□□□□ -0.12
NR1I3-221ENST00000505944 DCAF1Q9Y4B6 1507 aa14.11□□□□□ -0.15
NR1I3-221ENST00000505944 CECR2Q9BXF3 1484 aa14.09□□□□□ -0.15
NR1I3-221ENST00000505944 CC2D2AQ9P2K1 1620 aa14.07□□□□□ -0.16
NR1I3-221ENST00000505944 ZCCHC6Q5VYS8 1495 aaKnown RBP14.06□□□□□ -0.16
NR1I3-221ENST00000505944 EIF4G1Q04637 1599 aaKnown RBP14□□□□□ -0.17
NR1I3-221ENST00000505944 SCRIBQ14160 1630 aa13.97□□□□□ -0.17
NR1I3-221ENST00000505944 DNAJC5Q9H3Z4 198 aa13.87□□□□□ -0.19
NR1I3-221ENST00000505944 CUX2O14529 1486 aa13.66□□□□□ -0.22
NR1I3-221ENST00000505944 FOXD1Q16676 465 aa13.55□□□□□ -0.24
NR1I3-221ENST00000505944 ERCC6Q03468 1493 aa13.52□□□□□ -0.25
NR1I3-221ENST00000505944 NCAPD3P42695 1498 aa13.51□□□□□ -0.25
NR1I3-221ENST00000505944 SMARCA2P51531 1590 aa13.41□□□□□ -0.26
NR1I3-221ENST00000505944 HMGXB3Q12766 1538 aa13.4□□□□□ -0.26
NR1I3-221ENST00000505944 ATAD2BQ9ULI0 1458 aa13.38□□□□□ -0.27
NR1I3-221ENST00000505944 SMARCA4P51532 1647 aa13.32□□□□□ -0.28
NR1I3-221ENST00000505944 PLPPR3Q6T4P5 718 aa13.31□□□□□ -0.28
NR1I3-221ENST00000505944 LAMC3Q9Y6N6 1575 aa13.27□□□□□ -0.29
NR1I3-221ENST00000505944 BAZ1BQ9UIG0 1483 aaKnown RBP13.26□□□□□ -0.29
NR1I3-221ENST00000505944 BAZ1AQ9NRL2 1556 aaPredicted RBP13.25□□□□□ -0.29
NR1I3-221ENST00000505944 THOC2Q8NI27 1593 aaKnown RBP13.24□□□□□ -0.29
NR1I3-221ENST00000505944 PEG3Q9GZU2 1588 aa13.24□□□□□ -0.29
NR1I3-221ENST00000505944 NESP48681 1621 aa13.23□□□□□ -0.29
NR1I3-221ENST00000505944 PDS5BQ9NTI5 1447 aa13.21□□□□□ -0.3
NR1I3-221ENST00000505944 KIF21AQ7Z4S6 1674 aa13.13□□□□□ -0.31
NR1I3-221ENST00000505944 MROH2BQ7Z745 1585 aa13.07□□□□□ -0.32
NR1I3-221ENST00000505944 CADPSQ9ULU8 1353 aa13.07□□□□□ -0.32
NR1I3-221ENST00000505944 MRC2Q9UBG0 1479 aa13.06□□□□□ -0.32
NR1I3-221ENST00000505944 TRIM41Q8WV44 630 aa13.05□□□□□ -0.32
NR1I3-221ENST00000505944 WDR62O43379 1518 aa13.04□□□□□ -0.32
NR1I3-221ENST00000505944 CEP164Q9UPV0 1460 aa12.96□□□□□ -0.34
NR1I3-221ENST00000505944 WIZO95785 1651 aa12.95□□□□□ -0.34
NR1I3-221ENST00000505944 OSCARQ8IYS5 282 aa12.94□□□□□ -0.34
NR1I3-221ENST00000505944 FANCD2Q9BXW9 1451 aa12.89□□□□□ -0.35
NR1I3-221ENST00000505944 CFTRP13569 1480 aa12.86□□□□□ -0.35
NR1I3-221ENST00000505944 PRDM2Q13029 1718 aa12.78□□□□□ -0.36
NR1I3-221ENST00000505944 TOP2AP11388 1531 aaKnown RBP12.77□□□□□ -0.37
NR1I3-221ENST00000505944 MSH5O43196 834 aa12.76□□□□□ -0.37
NR1I3-221ENST00000505944 URB2Q14146 1524 aaKnown RBP12.76□□□□□ -0.37
NR1I3-221ENST00000505944 IFT140Q96RY7 1462 aa12.73□□□□□ -0.37
NR1I3-221ENST00000505944 RIMBP3CA6NJZ7 1639 aa12.73□□□□□ -0.37
NR1I3-221ENST00000505944 RIMBP3BA6NNM3 1639 aa12.73□□□□□ -0.37
NR1I3-221ENST00000505944 RIMBP3Q9UFD9 1639 aa12.73□□□□□ -0.37
NR1I3-221ENST00000505944 RSF1Q96T23 1441 aaPredicted RBP12.72□□□□□ -0.37
NR1I3-221ENST00000505944 PPP6R1Q9UPN7 881 aa12.72□□□□□ -0.37
NR1I3-221ENST00000505944 ADRA2BP18089 450 aa12.7□□□□□ -0.38
NR1I3-221ENST00000505944 ABCC8Q09428 1581 aa12.69□□□□□ -0.38
NR1I3-221ENST00000505944 ARHGEF11O15085 1522 aa12.69□□□□□ -0.38
NR1I3-221ENST00000505944 PIAS4Q8N2W9 510 aaPredicted RBP12.66□□□□□ -0.38
NR1I3-221ENST00000505944 ZNF608Q9ULD9 1512 aaPredicted RBP12.62□□□□□ -0.39
NR1I3-221ENST00000505944 TOPBP1Q92547 1522 aa12.61□□□□□ -0.39
NR1I3-221ENST00000505944 EIF4G3O43432 1585 aaKnown RBP12.59□□□□□ -0.39
NR1I3-221ENST00000505944 CCDC88BA6NC98 1476 aa12.59□□□□□ -0.39
NR1I3-221ENST00000505944 DNMBPQ6XZF7 1577 aa12.57□□□□□ -0.4
NR1I3-221ENST00000505944 CYB5RLQ6IPT4 315 aa12.57□□□□□ -0.4
NR1I3-221ENST00000505944 CHD1O14646 1710 aa12.54□□□□□ -0.4
NR1I3-221ENST00000505944 TRHP20396 242 aaPredicted RBP12.53□□□□□ -0.4
NR1I3-221ENST00000505944 WDR97A6NE52 1622 aa12.52□□□□□ -0.4
NR1I3-221ENST00000505944 ARAP1Q96P48 1450 aa12.52□□□□□ -0.41
NR1I3-221ENST00000505944 TARBP1Q13395 1621 aaKnown RBP12.51□□□□□ -0.41
NR1I3-221ENST00000505944 AQRO60306 1485 aaKnown RBP eCLIP12.47□□□□□ -0.41
NR1I3-221ENST00000505944 POLA1P09884 1462 aaPredicted RBP12.46□□□□□ -0.42
NR1I3-221ENST00000505944 FBLN2P98095 1184 aa12.45□□□□□ -0.42
NR1I3-221ENST00000505944 SYNJ1O43426 1573 aa12.43□□□□□ -0.42
NR1I3-221ENST00000505944 MAGI1Q96QZ7 1491 aaPredicted RBP12.43□□□□□ -0.42
NR1I3-221ENST00000505944 CLASP1Q7Z460 1538 aa12.42□□□□□ -0.42
NR1I3-221ENST00000505944 SOGA1O94964 1423 aa12.41□□□□□ -0.42
NR1I3-221ENST00000505944 CHMP7Q8WUX9 453 aaPredicted RBP12.39□□□□□ -0.43
NR1I3-221ENST00000505944 SNAPC4Q5SXM2 1469 aa12.38□□□□□ -0.43
NR1I3-221ENST00000505944 RAD54L2Q9Y4B4 1467 aa12.38□□□□□ -0.43
NR1I3-221ENST00000505944 GRIN2BQ13224 1484 aa12.37□□□□□ -0.43
NR1I3-221ENST00000505944 SYNJ2O15056 1496 aa12.36□□□□□ -0.43
NR1I3-221ENST00000505944 TDRD9Q8NDG6 1382 aaKnown RBP12.36□□□□□ -0.43
NR1I3-221ENST00000505944 FGD5Q6ZNL6 1462 aa12.34□□□□□ -0.43
NR1I3-221ENST00000505944 POTEDQ86YR6 584 aa12.33□□□□□ -0.44
NR1I3-221ENST00000505944 SUPT5HO00267 1087 aaKnown RBP12.31□□□□□ -0.44
NR1I3-221ENST00000505944 PBRM1Q86U86 1689 aa12.31□□□□□ -0.44
NR1I3-221ENST00000505944 CUX1P39880 1505 aa12.31□□□□□ -0.44
NR1I3-221ENST00000505944 GAPVD1Q14C86 1478 aa12.3□□□□□ -0.44
NR1I3-221ENST00000505944 ABCA5Q8WWZ7 1642 aa12.23□□□□□ -0.45
NR1I3-221ENST00000505944 ABCA10Q8WWZ4 1543 aa12.23□□□□□ -0.45
NR1I3-221ENST00000505944 GRIN2AQ12879 1464 aa12.19□□□□□ -0.46
NR1I3-221ENST00000505944 NUP160Q12769 1436 aa12.17□□□□□ -0.46
NR1I3-221ENST00000505944 ADAMTS12P58397 1594 aa12.15□□□□□ -0.46
NR1I3-221ENST00000505944 CEP170Q5SW79 1584 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms