RNA–Protein interactions for RNA: ENST00000504927.5

DDR1-255, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

TSL 4

Gene DDR1, Length 542 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-255ENST00000504927 NISCHQ9Y2I1 1504 aa49.93■■■■■ 5.58
DDR1-255ENST00000504927 CCDC180Q9P1Z9 1646 aa44.42■■■■■ 4.7
DDR1-255ENST00000504927 ABCC9O60706 1549 aa43.73■■■■■ 4.59
DDR1-255ENST00000504927 RB1CC1Q8TDY2 1594 aa41.89■■■■■ 4.3
DDR1-255ENST00000504927 DCAF8L2P0C7V8 631 aa41.82■■■■■ 4.29
DDR1-255ENST00000504927 NACADO15069 1562 aa41.79■■■■■ 4.28
DDR1-255ENST00000504927 ZCCHC6Q5VYS8 1495 aaKnown RBP41.56■■■■■ 4.24
DDR1-255ENST00000504927 MYO15BQ96JP2 1530 aa41.54■■■■■ 4.24
DDR1-255ENST00000504927 DCAF1Q9Y4B6 1507 aa41.35■■■■■ 4.21
DDR1-255ENST00000504927 UNC13AQ9UPW8 1703 aa41.07■■■■■ 4.16
DDR1-255ENST00000504927 PABPN1Q86U42 306 aaKnown RBP eCLIP40.82■■■■■ 4.13
DDR1-255ENST00000504927 BICRAQ9NZM4 1560 aa40.75■■■■■ 4.11
DDR1-255ENST00000504927 SCRIBQ14160 1630 aa40.6■■■■■ 4.09
DDR1-255ENST00000504927 DNAJC5BQ9UF47 199 aa40.37■■■■■ 4.05
DDR1-255ENST00000504927 SHROOM4Q9ULL8 1493 aa40.14■■■■■ 4.02
DDR1-255ENST00000504927 EIF4G1Q04637 1599 aaKnown RBP39.64■■■■□ 3.94
DDR1-255ENST00000504927 CC2D2AQ9P2K1 1620 aa39.54■■■■□ 3.92
DDR1-255ENST00000504927 CECR2Q9BXF3 1484 aa39.28■■■■□ 3.88
DDR1-255ENST00000504927 SMARCA4P51532 1647 aa38.78■■■■□ 3.8
DDR1-255ENST00000504927 BAZ1AQ9NRL2 1556 aaPredicted RBP38.7■■■■□ 3.79
DDR1-255ENST00000504927 ATAD2BQ9ULI0 1458 aa38.6■■■■□ 3.77
DDR1-255ENST00000504927 NCAPD3P42695 1498 aa38.58■■■■□ 3.77
DDR1-255ENST00000504927 SMARCA2P51531 1590 aa38.49■■■■□ 3.75
DDR1-255ENST00000504927 MROH2BQ7Z745 1585 aa38.49■■■■□ 3.75
DDR1-255ENST00000504927 HMGXB3Q12766 1538 aa38.38■■■■□ 3.74
DDR1-255ENST00000504927 PEG3Q9GZU2 1588 aa38.38■■■■□ 3.73
DDR1-255ENST00000504927 BAZ1BQ9UIG0 1483 aaKnown RBP38.25■■■■□ 3.71
DDR1-255ENST00000504927 RSF1Q96T23 1441 aaPredicted RBP38.08■■■■□ 3.69
DDR1-255ENST00000504927 WIZO95785 1651 aa38.07■■■■□ 3.69
DDR1-255ENST00000504927 NESP48681 1621 aa37.82■■■■□ 3.64
DDR1-255ENST00000504927 ERCC6Q03468 1493 aa37.64■■■■□ 3.62
DDR1-255ENST00000504927 TOP2AP11388 1531 aaKnown RBP37.63■■■■□ 3.61
DDR1-255ENST00000504927 LAMC3Q9Y6N6 1575 aa37.59■■■■□ 3.61
DDR1-255ENST00000504927 CADPSQ9ULU8 1353 aa37.45■■■■□ 3.59
DDR1-255ENST00000504927 KIF21AQ7Z4S6 1674 aa37.36■■■■□ 3.57
DDR1-255ENST00000504927 PDS5BQ9NTI5 1447 aa37.31■■■■□ 3.56
DDR1-255ENST00000504927 CUX2O14529 1486 aa37.31■■■■□ 3.56
DDR1-255ENST00000504927 THOC2Q8NI27 1593 aaKnown RBP37.29■■■■□ 3.56
DDR1-255ENST00000504927 CCDC88BA6NC98 1476 aa37.24■■■■□ 3.55
DDR1-255ENST00000504927 CFTRP13569 1480 aa37.2■■■■□ 3.54
DDR1-255ENST00000504927 SUPT5HO00267 1087 aaKnown RBP37.19■■■■□ 3.54
DDR1-255ENST00000504927 FANCD2Q9BXW9 1451 aa37.04■■■■□ 3.52
DDR1-255ENST00000504927 MRC2Q9UBG0 1479 aa37■■■■□ 3.51
DDR1-255ENST00000504927 CEP164Q9UPV0 1460 aa37■■■■□ 3.51
DDR1-255ENST00000504927 WDR62O43379 1518 aa36.91■■■■□ 3.5
DDR1-255ENST00000504927 PRDM2Q13029 1718 aa36.91■■■■□ 3.5
DDR1-255ENST00000504927 URB2Q14146 1524 aaKnown RBP36.74■■■■□ 3.47
DDR1-255ENST00000504927 ABCC8Q09428 1581 aa36.44■■■■□ 3.42
DDR1-255ENST00000504927 TOPBP1Q92547 1522 aa36.44■■■■□ 3.42
DDR1-255ENST00000504927 DNAJC5Q9H3Z4 198 aa36.41■■■■□ 3.42
DDR1-255ENST00000504927 DNMBPQ6XZF7 1577 aa36.36■■■■□ 3.41
DDR1-255ENST00000504927 IFT140Q96RY7 1462 aa36.21■■■■□ 3.39
DDR1-255ENST00000504927 ZNF608Q9ULD9 1512 aaPredicted RBP36.17■■■■□ 3.38
DDR1-255ENST00000504927 CUX1P39880 1505 aa36.13■■■■□ 3.37
DDR1-255ENST00000504927 POLA1P09884 1462 aaPredicted RBP36.12■■■■□ 3.37
DDR1-255ENST00000504927 TARBP1Q13395 1621 aaKnown RBP36.09■■■■□ 3.37
DDR1-255ENST00000504927 FGD5Q6ZNL6 1462 aa36.01■■■■□ 3.36
DDR1-255ENST00000504927 EIF4G3O43432 1585 aaKnown RBP36■■■■□ 3.35
DDR1-255ENST00000504927 RAD54L2Q9Y4B4 1467 aa35.99■■■■□ 3.35
DDR1-255ENST00000504927 SOGA1O94964 1423 aa35.97■■■■□ 3.35
DDR1-255ENST00000504927 WRNQ14191 1432 aaPredicted RBP eCLIP35.91■■■■□ 3.34
DDR1-255ENST00000504927 AQRO60306 1485 aaKnown RBP eCLIP35.9■■■■□ 3.342e-7■■■■■ 31.6
DDR1-255ENST00000504927 TDRD9Q8NDG6 1382 aaKnown RBP35.78■■■■□ 3.32
DDR1-255ENST00000504927 WDR97A6NE52 1622 aa35.76■■■■□ 3.32
DDR1-255ENST00000504927 TOP2BQ02880 1626 aa35.76■■■■□ 3.32
DDR1-255ENST00000504927 SYNJ1O43426 1573 aa35.76■■■■□ 3.31
DDR1-255ENST00000504927 BIVM-ERCC5R4GMW8 1640 aa35.72■■■■□ 3.31
DDR1-255ENST00000504927 OSCARQ8IYS5 282 aa35.67■■■■□ 3.3
DDR1-255ENST00000504927 ABCA10Q8WWZ4 1543 aa35.64■■■■□ 3.3
DDR1-255ENST00000504927 CHD1O14646 1710 aa35.59■■■■□ 3.29
DDR1-255ENST00000504927 SNAPC4Q5SXM2 1469 aa35.56■■■■□ 3.28
DDR1-255ENST00000504927 ABCA5Q8WWZ7 1642 aa35.54■■■■□ 3.28
DDR1-255ENST00000504927 GRIN2BQ13224 1484 aa35.52■■■■□ 3.28
DDR1-255ENST00000504927 GAPVD1Q14C86 1478 aa35.52■■■■□ 3.28
DDR1-255ENST00000504927 PBRM1Q86U86 1689 aa35.5■■■■□ 3.27
DDR1-255ENST00000504927 MAGI1Q96QZ7 1491 aaPredicted RBP35.45■■■■□ 3.27
DDR1-255ENST00000504927 FBLN2P98095 1184 aa35.43■■■■□ 3.26
DDR1-255ENST00000504927 CHMP7Q8WUX9 453 aaPredicted RBP35.36■■■■□ 3.25
DDR1-255ENST00000504927 SYNJ2O15056 1496 aa35.33■■■■□ 3.25
DDR1-255ENST00000504927 RIMBP3CA6NJZ7 1639 aa35.25■■■■□ 3.23
DDR1-255ENST00000504927 RIMBP3BA6NNM3 1639 aa35.25■■■■□ 3.23
DDR1-255ENST00000504927 RIMBP3Q9UFD9 1639 aa35.25■■■■□ 3.23
DDR1-255ENST00000504927 ADAMTS12P58397 1594 aa35.22■■■■□ 3.23
DDR1-255ENST00000504927 ARHGEF11O15085 1522 aa35.22■■■■□ 3.23
DDR1-255ENST00000504927 ERICH3Q5RHP9 1530 aa35.22■■■■□ 3.23
DDR1-255ENST00000504927 CLASP1Q7Z460 1538 aa35.2■■■■□ 3.23
DDR1-255ENST00000504927 KIF27Q86VH2 1401 aa35.19■■■■□ 3.22
DDR1-255ENST00000504927 TRIM41Q8WV44 630 aa35.19■■■■□ 3.22
DDR1-255ENST00000504927 FHAD1B1AJZ9 1412 aa35.14■■■■□ 3.22
DDR1-255ENST00000504927 GRIN2AQ12879 1464 aa35.1■■■■□ 3.21
DDR1-255ENST00000504927 IGF1RP08069 1367 aa35.07■■■■□ 3.2
DDR1-255ENST00000504927 CEP170Q5SW79 1584 aa35■■■■□ 3.19
DDR1-255ENST00000504927 NUP160Q12769 1436 aa34.96■■■■□ 3.19
DDR1-255ENST00000504927 ARAP1Q96P48 1450 aa34.94■■■■□ 3.18
DDR1-255ENST00000504927 CARMIL1Q5VZK9 1371 aa34.86■■■■□ 3.17
DDR1-255ENST00000504927 CUL7Q14999 1698 aa34.85■■■■□ 3.17
DDR1-255ENST00000504927 CYB5RLQ6IPT4 315 aa34.84■■■■□ 3.17
DDR1-255ENST00000504927 RUSC2Q8N2Y8 1516 aa34.79■■■■□ 3.16
DDR1-255ENST00000504927 ERCC6L2Q5T890 1561 aa34.76■■■■□ 3.16
DDR1-255ENST00000504927 SHROOM2Q13796 1616 aa34.74■■■■□ 3.15
Retrieved 100 of 20,778 RNA–protein pairs in 103.3 ms