RNA–Protein interactions for RNA: ENST00000504807.5

DDX41-204, Transcript of DEAD-box helicase 41, humanhuman

TSL 2

Gene DDX41, Length 794 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-204ENST00000504807 NISCHQ9Y2I1 1504 aa32.92■■■□□ 2.86
DDX41-204ENST00000504807 ABCC9O60706 1549 aa30.47■■■□□ 2.47
DDX41-204ENST00000504807 DNAJC5BQ9UF47 199 aa29.46■■■□□ 2.31
DDX41-204ENST00000504807 CCDC180Q9P1Z9 1646 aa29.39■■■□□ 2.3
DDX41-204ENST00000504807 RB1CC1Q8TDY2 1594 aa28.45■■■□□ 2.15
DDX41-204ENST00000504807 PABPN1Q86U42 306 aaKnown RBP eCLIP28.28■■■□□ 2.124e-7■■■■□ 25.5
DDX41-204ENST00000504807 NACADO15069 1562 aa28.02■■■□□ 2.08
DDX41-204ENST00000504807 DCAF8L2P0C7V8 631 aa27.93■■■□□ 2.06
DDX41-204ENST00000504807 UNC13AQ9UPW8 1703 aa27.72■■■□□ 2.03
DDX41-204ENST00000504807 DNAJC5Q9H3Z4 198 aa27.69■■■□□ 2.02
DDX41-204ENST00000504807 BICRAQ9NZM4 1560 aa27.68■■■□□ 2.02
DDX41-204ENST00000504807 CECR2Q9BXF3 1484 aa27.51■■■□□ 2
DDX41-204ENST00000504807 MYO15BQ96JP2 1530 aa27.41■■□□□ 1.98
DDX41-204ENST00000504807 CC2D2AQ9P2K1 1620 aa27.39■■□□□ 1.98
DDX41-204ENST00000504807 ZCCHC6Q5VYS8 1495 aaKnown RBP27.36■■□□□ 1.97
DDX41-204ENST00000504807 DCAF1Q9Y4B6 1507 aa27.15■■□□□ 1.94
DDX41-204ENST00000504807 SHROOM4Q9ULL8 1493 aa27.13■■□□□ 1.93
DDX41-204ENST00000504807 EIF4G1Q04637 1599 aaKnown RBP27.09■■□□□ 1.93
DDX41-204ENST00000504807 SCRIBQ14160 1630 aa26.89■■□□□ 1.9
DDX41-204ENST00000504807 CUX2O14529 1486 aa26.55■■□□□ 1.84
DDX41-204ENST00000504807 ERCC6Q03468 1493 aa26.36■■□□□ 1.81
DDX41-204ENST00000504807 TRIM41Q8WV44 630 aa26.2■■□□□ 1.78
DDX41-204ENST00000504807 NCAPD3P42695 1498 aa25.91■■□□□ 1.74
DDX41-204ENST00000504807 NESP48681 1621 aa25.9■■□□□ 1.74
DDX41-204ENST00000504807 ATAD2BQ9ULI0 1458 aa25.73■■□□□ 1.71
DDX41-204ENST00000504807 THOC2Q8NI27 1593 aaKnown RBP25.72■■□□□ 1.71
DDX41-204ENST00000504807 SMARCA4P51532 1647 aa25.65■■□□□ 1.7
DDX41-204ENST00000504807 SMARCA2P51531 1590 aa25.61■■□□□ 1.69
DDX41-204ENST00000504807 HMGXB3Q12766 1538 aa25.6■■□□□ 1.69
DDX41-204ENST00000504807 BAZ1AQ9NRL2 1556 aaPredicted RBP25.48■■□□□ 1.67
DDX41-204ENST00000504807 BAZ1BQ9UIG0 1483 aaKnown RBP25.45■■□□□ 1.66
DDX41-204ENST00000504807 MROH2BQ7Z745 1585 aa25.44■■□□□ 1.66
DDX41-204ENST00000504807 LAMC3Q9Y6N6 1575 aa25.44■■□□□ 1.66
DDX41-204ENST00000504807 KIF21AQ7Z4S6 1674 aa25.41■■□□□ 1.66
DDX41-204ENST00000504807 PDS5BQ9NTI5 1447 aa25.4■■□□□ 1.66
DDX41-204ENST00000504807 PEG3Q9GZU2 1588 aa25.39■■□□□ 1.65
DDX41-204ENST00000504807 OSCARQ8IYS5 282 aa25.26■■□□□ 1.63
DDX41-204ENST00000504807 MRC2Q9UBG0 1479 aa25.23■■□□□ 1.63
DDX41-204ENST00000504807 WDR62O43379 1518 aa25.17■■□□□ 1.62
DDX41-204ENST00000504807 WIZO95785 1651 aa25.14■■□□□ 1.62
DDX41-204ENST00000504807 CADPSQ9ULU8 1353 aa25.13■■□□□ 1.61
DDX41-204ENST00000504807 RIMBP3CA6NJZ7 1639 aa24.97■■□□□ 1.59
DDX41-204ENST00000504807 RIMBP3BA6NNM3 1639 aa24.97■■□□□ 1.59
DDX41-204ENST00000504807 RIMBP3Q9UFD9 1639 aa24.97■■□□□ 1.59
DDX41-204ENST00000504807 RSF1Q96T23 1441 aaPredicted RBP24.95■■□□□ 1.59
DDX41-204ENST00000504807 CEP164Q9UPV0 1460 aa24.95■■□□□ 1.58
DDX41-204ENST00000504807 FANCD2Q9BXW9 1451 aa24.85■■□□□ 1.57
DDX41-204ENST00000504807 TRHP20396 242 aaPredicted RBP24.85■■□□□ 1.57
DDX41-204ENST00000504807 ARHGEF11O15085 1522 aa24.82■■□□□ 1.56
DDX41-204ENST00000504807 AEBP2Q6ZN18 517 aaPredicted RBP24.81■■□□□ 1.56
DDX41-204ENST00000504807 CYB5RLQ6IPT4 315 aa24.8■■□□□ 1.56
DDX41-204ENST00000504807 TOP2AP11388 1531 aaKnown RBP24.77■■□□□ 1.56
DDX41-204ENST00000504807 URB2Q14146 1524 aaKnown RBP24.7■■□□□ 1.54
DDX41-204ENST00000504807 CFTRP13569 1480 aa24.64■■□□□ 1.53
DDX41-204ENST00000504807 ZNF608Q9ULD9 1512 aaPredicted RBP24.59■■□□□ 1.53
DDX41-204ENST00000504807 ARAP1Q96P48 1450 aa24.53■■□□□ 1.52
DDX41-204ENST00000504807 CCDC88BA6NC98 1476 aa24.52■■□□□ 1.52
DDX41-204ENST00000504807 IFT140Q96RY7 1462 aa24.47■■□□□ 1.51
DDX41-204ENST00000504807 PRDM2Q13029 1718 aa24.36■■□□□ 1.49
DDX41-204ENST00000504807 FBLN2P98095 1184 aa24.36■■□□□ 1.49
DDX41-204ENST00000504807 EIF4G3O43432 1585 aaKnown RBP24.33■■□□□ 1.48
DDX41-204ENST00000504807 CHD1O14646 1710 aa24.29■■□□□ 1.48
DDX41-204ENST00000504807 TOPBP1Q92547 1522 aa24.26■■□□□ 1.47
DDX41-204ENST00000504807 AQRO60306 1485 aaKnown RBP eCLIP24.26■■□□□ 1.472e-7■■■■■ 62.1
DDX41-204ENST00000504807 ABCC8Q09428 1581 aa24.08■■□□□ 1.44
DDX41-204ENST00000504807 DNMBPQ6XZF7 1577 aa24.07■■□□□ 1.44
DDX41-204ENST00000504807 TARBP1Q13395 1621 aaKnown RBP24.06■■□□□ 1.44
DDX41-204ENST00000504807 CLASP1Q7Z460 1538 aa24.02■■□□□ 1.44
DDX41-204ENST00000504807 TDRD9Q8NDG6 1382 aaKnown RBP23.98■■□□□ 1.43
DDX41-204ENST00000504807 CHMP7Q8WUX9 453 aaPredicted RBP23.97■■□□□ 1.43
DDX41-204ENST00000504807 POLA1P09884 1462 aaPredicted RBP23.96■■□□□ 1.43
DDX41-204ENST00000504807 SNAPC4Q5SXM2 1469 aa23.96■■□□□ 1.43
DDX41-204ENST00000504807 SUPT5HO00267 1087 aaKnown RBP23.94■■□□□ 1.42
DDX41-204ENST00000504807 RAD54L2Q9Y4B4 1467 aa23.94■■□□□ 1.42
DDX41-204ENST00000504807 SYNJ1O43426 1573 aa23.92■■□□□ 1.42
DDX41-204ENST00000504807 GAPVD1Q14C86 1478 aa23.9■■□□□ 1.42
DDX41-204ENST00000504807 CUX1P39880 1505 aa23.88■■□□□ 1.41
DDX41-204ENST00000504807 ILDR1Q86SU0 546 aaPredicted RBP23.87■■□□□ 1.41
DDX41-204ENST00000504807 SOGA1O94964 1423 aa23.85■■□□□ 1.41
DDX41-204ENST00000504807 FGD5Q6ZNL6 1462 aa23.82■■□□□ 1.4
DDX41-204ENST00000504807 MAGI1Q96QZ7 1491 aaPredicted RBP23.79■■□□□ 1.4
DDX41-204ENST00000504807 SYNJ2O15056 1496 aa23.75■■□□□ 1.39
DDX41-204ENST00000504807 GRIN2BQ13224 1484 aa23.73■■□□□ 1.39
DDX41-204ENST00000504807 WDR97A6NE52 1622 aa23.68■■□□□ 1.38
DDX41-204ENST00000504807 ERCC6L2Q5T890 1561 aa23.65■■□□□ 1.38
DDX41-204ENST00000504807 KDM4FA0A1W2PPD8 638 aa23.58■■□□□ 1.37
DDX41-204ENST00000504807 ABCA10Q8WWZ4 1543 aa23.54■■□□□ 1.36
DDX41-204ENST00000504807 ABCA5Q8WWZ7 1642 aa23.53■■□□□ 1.36
DDX41-204ENST00000504807 PBRM1Q86U86 1689 aa23.51■■□□□ 1.35
DDX41-204ENST00000504807 BIVM-ERCC5R4GMW8 1640 aa23.51■■□□□ 1.35
DDX41-204ENST00000504807 KIF13AQ9H1H9 1805 aa23.5■■□□□ 1.35
DDX41-204ENST00000504807 TOP2BQ02880 1626 aa23.48■■□□□ 1.35
DDX41-204ENST00000504807 CEP170Q5SW79 1584 aa23.48■■□□□ 1.35
DDX41-204ENST00000504807 FAM69CQ0P6D2 419 aa23.47■■□□□ 1.35
DDX41-204ENST00000504807 WRNQ14191 1432 aaPredicted RBP eCLIP23.47■■□□□ 1.35
DDX41-204ENST00000504807 GRIN2AQ12879 1464 aa23.42■■□□□ 1.34
DDX41-204ENST00000504807 NUP160Q12769 1436 aa23.36■■□□□ 1.33
DDX41-204ENST00000504807 ABCC10Q5T3U5 1492 aa23.36■■□□□ 1.33
DDX41-204ENST00000504807 ADAMTS12P58397 1594 aa23.32■■□□□ 1.32
DDX41-204ENST00000504807 KDM6BO15054 1643 aa23.3■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms