RNA–Protein interactions for RNA: ENST00000504701.5

CDC42SE2-207, Transcript of CDC42 small effector 2, humanhuman

TSL 4

Gene CDC42SE2, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE2-207ENST00000504701 NISCHQ9Y2I1 1504 aa56.48■■■■■ 6.63
CDC42SE2-207ENST00000504701 CCDC180Q9P1Z9 1646 aa50.5■■■■■ 5.67
CDC42SE2-207ENST00000504701 ABCC9O60706 1549 aa50.26■■■■■ 5.64
CDC42SE2-207ENST00000504701 RB1CC1Q8TDY2 1594 aa47.87■■■■■ 5.25
CDC42SE2-207ENST00000504701 NACADO15069 1562 aa47.61■■■■■ 5.21
CDC42SE2-207ENST00000504701 DCAF8L2P0C7V8 631 aa47.53■■■■■ 5.2
CDC42SE2-207ENST00000504701 MYO15BQ96JP2 1530 aa47■■■■■ 5.12
CDC42SE2-207ENST00000504701 UNC13AQ9UPW8 1703 aa46.99■■■■■ 5.11
CDC42SE2-207ENST00000504701 ZCCHC6Q5VYS8 1495 aaKnown RBP46.91■■■■■ 5.1
CDC42SE2-207ENST00000504701 DNAJC5BQ9UF47 199 aa46.87■■■■■ 5.09
CDC42SE2-207ENST00000504701 PABPN1Q86U42 306 aaKnown RBP eCLIP46.85■■■■■ 5.09
CDC42SE2-207ENST00000504701 BICRAQ9NZM4 1560 aa46.6■■■■■ 5.05
CDC42SE2-207ENST00000504701 DCAF1Q9Y4B6 1507 aa46.58■■■■■ 5.05
CDC42SE2-207ENST00000504701 SCRIBQ14160 1630 aa46.17■■■■■ 4.98
CDC42SE2-207ENST00000504701 SHROOM4Q9ULL8 1493 aa45.75■■■■■ 4.91
CDC42SE2-207ENST00000504701 CC2D2AQ9P2K1 1620 aa45.41■■■■■ 4.86
CDC42SE2-207ENST00000504701 EIF4G1Q04637 1599 aaKnown RBP45.37■■■■■ 4.85
CDC42SE2-207ENST00000504701 CECR2Q9BXF3 1484 aa45.16■■■■■ 4.82
CDC42SE2-207ENST00000504701 SMARCA4P51532 1647 aa44.02■■■■■ 4.64
CDC42SE2-207ENST00000504701 NCAPD3P42695 1498 aa43.96■■■■■ 4.63
CDC42SE2-207ENST00000504701 ATAD2BQ9ULI0 1458 aa43.94■■■■■ 4.62
CDC42SE2-207ENST00000504701 SMARCA2P51531 1590 aa43.77■■■■■ 4.6
CDC42SE2-207ENST00000504701 BAZ1AQ9NRL2 1556 aaPredicted RBP43.77■■■■■ 4.6
CDC42SE2-207ENST00000504701 HMGXB3Q12766 1538 aa43.68■■■■■ 4.58
CDC42SE2-207ENST00000504701 MROH2BQ7Z745 1585 aa43.61■■■■■ 4.57
CDC42SE2-207ENST00000504701 PEG3Q9GZU2 1588 aa43.52■■■■■ 4.56
CDC42SE2-207ENST00000504701 BAZ1BQ9UIG0 1483 aaKnown RBP43.51■■■■■ 4.56
CDC42SE2-207ENST00000504701 NESP48681 1621 aa43.33■■■■■ 4.53
CDC42SE2-207ENST00000504701 ERCC6Q03468 1493 aa43.26■■■■■ 4.52
CDC42SE2-207ENST00000504701 WIZO95785 1651 aa43.14■■■■■ 4.5
CDC42SE2-207ENST00000504701 CUX2O14529 1486 aa43.01■■■■■ 4.48
CDC42SE2-207ENST00000504701 LAMC3Q9Y6N6 1575 aa42.92■■■■■ 4.46
CDC42SE2-207ENST00000504701 KIF21AQ7Z4S6 1674 aa42.79■■■■■ 4.44
CDC42SE2-207ENST00000504701 RSF1Q96T23 1441 aaPredicted RBP42.78■■■■■ 4.44
CDC42SE2-207ENST00000504701 THOC2Q8NI27 1593 aaKnown RBP42.78■■■■■ 4.44
CDC42SE2-207ENST00000504701 CADPSQ9ULU8 1353 aa42.65■■■■■ 4.42
CDC42SE2-207ENST00000504701 DNAJC5Q9H3Z4 198 aa42.6■■■■■ 4.41
CDC42SE2-207ENST00000504701 PDS5BQ9NTI5 1447 aa42.6■■■■■ 4.41
CDC42SE2-207ENST00000504701 TOP2AP11388 1531 aaKnown RBP42.51■■■■■ 4.4
CDC42SE2-207ENST00000504701 MRC2Q9UBG0 1479 aa42.3■■■■■ 4.36
CDC42SE2-207ENST00000504701 CFTRP13569 1480 aa42.25■■■■■ 4.35
CDC42SE2-207ENST00000504701 FANCD2Q9BXW9 1451 aa42.21■■■■■ 4.35
CDC42SE2-207ENST00000504701 WDR62O43379 1518 aa42.2■■■■■ 4.35
CDC42SE2-207ENST00000504701 CEP164Q9UPV0 1460 aa42.2■■■■■ 4.35
CDC42SE2-207ENST00000504701 CCDC88BA6NC98 1476 aa42.06■■■■■ 4.32
CDC42SE2-207ENST00000504701 PRDM2Q13029 1718 aa41.94■■■■■ 4.3
CDC42SE2-207ENST00000504701 URB2Q14146 1524 aaKnown RBP41.9■■■■■ 4.3
CDC42SE2-207ENST00000504701 TOPBP1Q92547 1522 aa41.48■■■■■ 4.23
CDC42SE2-207ENST00000504701 ZNF608Q9ULD9 1512 aaPredicted RBP41.35■■■■■ 4.21
CDC42SE2-207ENST00000504701 DNMBPQ6XZF7 1577 aa41.33■■■■■ 4.21
CDC42SE2-207ENST00000504701 IFT140Q96RY7 1462 aa41.31■■■■■ 4.2
CDC42SE2-207ENST00000504701 ABCC8Q09428 1581 aa41.24■■■■■ 4.19
CDC42SE2-207ENST00000504701 SUPT5HO00267 1087 aaKnown RBP41.19■■■■■ 4.18
CDC42SE2-207ENST00000504701 EIF4G3O43432 1585 aaKnown RBP41.12■■■■■ 4.17
CDC42SE2-207ENST00000504701 TARBP1Q13395 1621 aaKnown RBP41.11■■■■■ 4.17
CDC42SE2-207ENST00000504701 OSCARQ8IYS5 282 aa41.09■■■■■ 4.17
CDC42SE2-207ENST00000504701 POLA1P09884 1462 aaPredicted RBP41.08■■■■■ 4.17
CDC42SE2-207ENST00000504701 AQRO60306 1485 aaKnown RBP eCLIP40.99■■■■■ 4.15
CDC42SE2-207ENST00000504701 TRIM41Q8WV44 630 aa40.99■■■■■ 4.15
CDC42SE2-207ENST00000504701 RAD54L2Q9Y4B4 1467 aa40.98■■■■■ 4.15
CDC42SE2-207ENST00000504701 CUX1P39880 1505 aa40.95■■■■■ 4.15
CDC42SE2-207ENST00000504701 FGD5Q6ZNL6 1462 aa40.89■■■■■ 4.14
CDC42SE2-207ENST00000504701 SOGA1O94964 1423 aa40.84■■■■■ 4.13
CDC42SE2-207ENST00000504701 CHD1O14646 1710 aa40.79■■■■■ 4.12
CDC42SE2-207ENST00000504701 TDRD9Q8NDG6 1382 aaKnown RBP40.78■■■■■ 4.12
CDC42SE2-207ENST00000504701 RIMBP3CA6NJZ7 1639 aa40.68■■■■■ 4.1
CDC42SE2-207ENST00000504701 RIMBP3BA6NNM3 1639 aa40.68■■■■■ 4.1
CDC42SE2-207ENST00000504701 RIMBP3Q9UFD9 1639 aa40.68■■■■■ 4.1
CDC42SE2-207ENST00000504701 WDR97A6NE52 1622 aa40.63■■■■■ 4.09
CDC42SE2-207ENST00000504701 FBLN2P98095 1184 aa40.59■■■■■ 4.09
CDC42SE2-207ENST00000504701 SNAPC4Q5SXM2 1469 aa40.58■■■■■ 4.09
CDC42SE2-207ENST00000504701 ARHGEF11O15085 1522 aa40.55■■■■■ 4.08
CDC42SE2-207ENST00000504701 GRIN2BQ13224 1484 aa40.43■■■■■ 4.06
CDC42SE2-207ENST00000504701 PBRM1Q86U86 1689 aa40.43■■■■■ 4.06
CDC42SE2-207ENST00000504701 ABCA10Q8WWZ4 1543 aa40.38■■■■■ 4.06
CDC42SE2-207ENST00000504701 SYNJ1O43426 1573 aa40.38■■■■■ 4.05
CDC42SE2-207ENST00000504701 MAGI1Q96QZ7 1491 aaPredicted RBP40.38■■■■■ 4.05
CDC42SE2-207ENST00000504701 GAPVD1Q14C86 1478 aa40.37■■■■■ 4.05
CDC42SE2-207ENST00000504701 ABCA5Q8WWZ7 1642 aa40.36■■■■■ 4.05
CDC42SE2-207ENST00000504701 BIVM-ERCC5R4GMW8 1640 aa40.35■■■■■ 4.05
CDC42SE2-207ENST00000504701 TOP2BQ02880 1626 aa40.33■■■■■ 4.05
CDC42SE2-207ENST00000504701 WRNQ14191 1432 aaPredicted RBP eCLIP40.31■■■■■ 4.04
CDC42SE2-207ENST00000504701 CHMP7Q8WUX9 453 aaPredicted RBP40.28■■■■■ 4.04
CDC42SE2-207ENST00000504701 CLASP1Q7Z460 1538 aa40.26■■■■■ 4.04
CDC42SE2-207ENST00000504701 SYNJ2O15056 1496 aa40.26■■■■■ 4.04
CDC42SE2-207ENST00000504701 ARAP1Q96P48 1450 aa40.21■■■■■ 4.03
CDC42SE2-207ENST00000504701 CYB5RLQ6IPT4 315 aa40.2■■■■■ 4.03
CDC42SE2-207ENST00000504701 ADAMTS12P58397 1594 aa40.03■■■■■ 4
CDC42SE2-207ENST00000504701 GRIN2AQ12879 1464 aa39.95■■■■□ 3.99
CDC42SE2-207ENST00000504701 CEP170Q5SW79 1584 aa39.88■■■■□ 3.97
CDC42SE2-207ENST00000504701 ERICH3Q5RHP9 1530 aa39.86■■■■□ 3.97
CDC42SE2-207ENST00000504701 FHAD1B1AJZ9 1412 aa39.83■■■■□ 3.97
CDC42SE2-207ENST00000504701 NUP160Q12769 1436 aa39.8■■■■□ 3.96
CDC42SE2-207ENST00000504701 ERCC6L2Q5T890 1561 aa39.78■■■■□ 3.96
CDC42SE2-207ENST00000504701 SHROOM2Q13796 1616 aa39.62■■■■□ 3.93
CDC42SE2-207ENST00000504701 TRHP20396 242 aaPredicted RBP39.6■■■■□ 3.93
CDC42SE2-207ENST00000504701 IGF1RP08069 1367 aa39.47■■■■□ 3.91
CDC42SE2-207ENST00000504701 RUSC2Q8N2Y8 1516 aa39.47■■■■□ 3.91
CDC42SE2-207ENST00000504701 KIF27Q86VH2 1401 aa39.47■■■■□ 3.91
CDC42SE2-207ENST00000504701 PRG4Q92954 1404 aaPredicted RBP39.39■■■■□ 3.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms