RNA–Protein interactions for RNA: ENST00000504663.1

TPM3-217, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-217ENST00000504663 NISCHQ9Y2I1 1504 aa24.45■■□□□ 1.51
TPM3-217ENST00000504663 CCDC180Q9P1Z9 1646 aa21.5■■□□□ 1.03
TPM3-217ENST00000504663 AEBP2Q6ZN18 517 aaPredicted RBP20.6■□□□□ 0.89
TPM3-217ENST00000504663 ZCCHC6Q5VYS8 1495 aaKnown RBP20.56■□□□□ 0.88
TPM3-217ENST00000504663 ABCC9O60706 1549 aa20.32■□□□□ 0.84
TPM3-217ENST00000504663 DCAF1Q9Y4B6 1507 aa20.28■□□□□ 0.84
TPM3-217ENST00000504663 MYO15BQ96JP2 1530 aa20.11■□□□□ 0.81
TPM3-217ENST00000504663 CHIC1Q5VXU3 224 aa20.08■□□□□ 0.81
TPM3-217ENST00000504663 NACADO15069 1562 aa19.97■□□□□ 0.79
TPM3-217ENST00000504663 DCAF8L2P0C7V8 631 aa19.86■□□□□ 0.77
TPM3-217ENST00000504663 RB1CC1Q8TDY2 1594 aa19.83■□□□□ 0.76
TPM3-217ENST00000504663 SCRIBQ14160 1630 aa19.64■□□□□ 0.73
TPM3-217ENST00000504663 SHROOM4Q9ULL8 1493 aa19.61■□□□□ 0.73
TPM3-217ENST00000504663 UNC13AQ9UPW8 1703 aa19.58■□□□□ 0.72
TPM3-217ENST00000504663 BICRAQ9NZM4 1560 aa19.36■□□□□ 0.69
TPM3-217ENST00000504663 PABPN1Q86U42 306 aaKnown RBP eCLIP19.03■□□□□ 0.64
TPM3-217ENST00000504663 CECR2Q9BXF3 1484 aa19.01■□□□□ 0.63
TPM3-217ENST00000504663 MROH2BQ7Z745 1585 aa18.89■□□□□ 0.62
TPM3-217ENST00000504663 SMARCA4P51532 1647 aa18.87■□□□□ 0.61
TPM3-217ENST00000504663 BAZ1AQ9NRL2 1556 aaPredicted RBP18.86■□□□□ 0.61
TPM3-217ENST00000504663 RSF1Q96T23 1441 aaPredicted RBP18.86■□□□□ 0.61
TPM3-217ENST00000504663 WIZO95785 1651 aa18.73■□□□□ 0.59
TPM3-217ENST00000504663 EIF4G1Q04637 1599 aaKnown RBP18.72■□□□□ 0.59
TPM3-217ENST00000504663 PEG3Q9GZU2 1588 aa18.7■□□□□ 0.58
TPM3-217ENST00000504663 SUPT5HO00267 1087 aaKnown RBP18.68■□□□□ 0.58
TPM3-217ENST00000504663 ATAD2BQ9ULI0 1458 aa18.56■□□□□ 0.56
TPM3-217ENST00000504663 TOP2AP11388 1531 aaKnown RBP18.54■□□□□ 0.56
TPM3-217ENST00000504663 SMARCA2P51531 1590 aa18.52■□□□□ 0.56
TPM3-217ENST00000504663 CC2D2AQ9P2K1 1620 aa18.47■□□□□ 0.55
TPM3-217ENST00000504663 HMGXB3Q12766 1538 aa18.44■□□□□ 0.54
TPM3-217ENST00000504663 NCAPD3P42695 1498 aa18.43■□□□□ 0.54
TPM3-217ENST00000504663 BAZ1BQ9UIG0 1483 aaKnown RBP18.39■□□□□ 0.53
TPM3-217ENST00000504663 CCDC88BA6NC98 1476 aa18.28■□□□□ 0.52
TPM3-217ENST00000504663 DNAJC5BQ9UF47 199 aa18.1■□□□□ 0.49
TPM3-217ENST00000504663 PRDM2Q13029 1718 aa17.98■□□□□ 0.47
TPM3-217ENST00000504663 CFTRP13569 1480 aa17.97■□□□□ 0.47
TPM3-217ENST00000504663 CADPSQ9ULU8 1353 aa17.88■□□□□ 0.45
TPM3-217ENST00000504663 ABCC8Q09428 1581 aa17.86■□□□□ 0.45
TPM3-217ENST00000504663 NESP48681 1621 aa17.84■□□□□ 0.45
TPM3-217ENST00000504663 LAMC3Q9Y6N6 1575 aa17.84■□□□□ 0.45
TPM3-217ENST00000504663 PHF23Q9BUL5 403 aaPredicted RBP17.78■□□□□ 0.44
TPM3-217ENST00000504663 SYNJ1O43426 1573 aa17.76■□□□□ 0.43
TPM3-217ENST00000504663 BIVM-ERCC5R4GMW8 1640 aa17.72■□□□□ 0.43
TPM3-217ENST00000504663 WRNQ14191 1432 aaPredicted RBP eCLIP17.71■□□□□ 0.43
TPM3-217ENST00000504663 KIF21AQ7Z4S6 1674 aa17.7■□□□□ 0.42
TPM3-217ENST00000504663 FANCD2Q9BXW9 1451 aa17.69■□□□□ 0.42
TPM3-217ENST00000504663 CUX1P39880 1505 aa17.69■□□□□ 0.42
TPM3-217ENST00000504663 TOP2BQ02880 1626 aa17.69■□□□□ 0.42
TPM3-217ENST00000504663 CEP164Q9UPV0 1460 aa17.61■□□□□ 0.41
TPM3-217ENST00000504663 PDS5BQ9NTI5 1447 aa17.59■□□□□ 0.41
TPM3-217ENST00000504663 TRIM41Q8WV44 630 aa17.58■□□□□ 0.4
TPM3-217ENST00000504663 DNMBPQ6XZF7 1577 aa17.57■□□□□ 0.4
TPM3-217ENST00000504663 URB2Q14146 1524 aaKnown RBP17.57■□□□□ 0.4
TPM3-217ENST00000504663 TOPBP1Q92547 1522 aa17.53■□□□□ 0.4
TPM3-217ENST00000504663 THOC2Q8NI27 1593 aaKnown RBP17.5■□□□□ 0.39
TPM3-217ENST00000504663 FGD5Q6ZNL6 1462 aa17.47■□□□□ 0.39
TPM3-217ENST00000504663 MRC2Q9UBG0 1479 aa17.47■□□□□ 0.39
TPM3-217ENST00000504663 WDR62O43379 1518 aa17.46■□□□□ 0.39
TPM3-217ENST00000504663 WDR97A6NE52 1622 aa17.44■□□□□ 0.38
TPM3-217ENST00000504663 SOGA1O94964 1423 aa17.44■□□□□ 0.38
TPM3-217ENST00000504663 POLA1P09884 1462 aaPredicted RBP17.44■□□□□ 0.38
TPM3-217ENST00000504663 RUSC2Q8N2Y8 1516 aa17.43■□□□□ 0.38
TPM3-217ENST00000504663 SENP3Q9H4L4 574 aaPredicted RBP17.43■□□□□ 0.38
TPM3-217ENST00000504663 ERCC6Q03468 1493 aa17.37■□□□□ 0.37
TPM3-217ENST00000504663 TARBP1Q13395 1621 aaKnown RBP17.36■□□□□ 0.37
TPM3-217ENST00000504663 CUX2O14529 1486 aa17.34■□□□□ 0.37
TPM3-217ENST00000504663 ABCA10Q8WWZ4 1543 aa17.34■□□□□ 0.37
TPM3-217ENST00000504663 RAD54L2Q9Y4B4 1467 aa17.34■□□□□ 0.37
TPM3-217ENST00000504663 EEA1Q15075 1411 aa17.33■□□□□ 0.36
TPM3-217ENST00000504663 ABCA5Q8WWZ7 1642 aa17.29■□□□□ 0.36
TPM3-217ENST00000504663 KIF21BO75037 1637 aa17.24■□□□□ 0.35
TPM3-217ENST00000504663 KIF27Q86VH2 1401 aa17.23■□□□□ 0.35
TPM3-217ENST00000504663 FAM9AQ8IZU1 332 aaPredicted RBP17.23■□□□□ 0.35
TPM3-217ENST00000504663 IFT140Q96RY7 1462 aa17.2■□□□□ 0.34
TPM3-217ENST00000504663 PRXQ9BXM0 1461 aa17.18■□□□□ 0.34
TPM3-217ENST00000504663 PBRM1Q86U86 1689 aa17.16■□□□□ 0.34
TPM3-217ENST00000504663 CSRNP3Q8WYN3 585 aa17.16■□□□□ 0.34
TPM3-217ENST00000504663 ZNF608Q9ULD9 1512 aaPredicted RBP17.16■□□□□ 0.34
TPM3-217ENST00000504663 EIF4G3O43432 1585 aaKnown RBP17.15■□□□□ 0.34
TPM3-217ENST00000504663 LOC105371045A0A1W2PR82 267 aa17.14■□□□□ 0.33
TPM3-217ENST00000504663 IGF1RP08069 1367 aa17.14■□□□□ 0.33
TPM3-217ENST00000504663 ERICH3Q5RHP9 1530 aa17.13■□□□□ 0.33
TPM3-217ENST00000504663 GAPVD1Q14C86 1478 aa17.12■□□□□ 0.33
TPM3-217ENST00000504663 RAPGEF2Q9Y4G8 1499 aa17.12■□□□□ 0.33
TPM3-217ENST00000504663 CUL7Q14999 1698 aa17.11■□□□□ 0.33
TPM3-217ENST00000504663 TDRD9Q8NDG6 1382 aaKnown RBP17.11■□□□□ 0.33
TPM3-217ENST00000504663 GOLGA3Q08378 1498 aa17.11■□□□□ 0.33
TPM3-217ENST00000504663 AQRO60306 1485 aaKnown RBP eCLIP17.07■□□□□ 0.323e-10■□□□□ 8.1
TPM3-217ENST00000504663 ADAMTS12P58397 1594 aa17.06■□□□□ 0.32
TPM3-217ENST00000504663 GRIN2BQ13224 1484 aa17.02■□□□□ 0.32
TPM3-217ENST00000504663 CARMIL1Q5VZK9 1371 aa17.01■□□□□ 0.31
TPM3-217ENST00000504663 TNIKQ9UKE5 1360 aa17■□□□□ 0.31
TPM3-217ENST00000504663 SNAPC4Q5SXM2 1469 aa16.96■□□□□ 0.31
TPM3-217ENST00000504663 EHMT2Q96KQ7 1210 aa16.94■□□□□ 0.3
TPM3-217ENST00000504663 FHAD1B1AJZ9 1412 aa16.93■□□□□ 0.3
TPM3-217ENST00000504663 MAGI1Q96QZ7 1491 aaPredicted RBP16.93■□□□□ 0.3
TPM3-217ENST00000504663 CTTNBP2Q8WZ74 1663 aa16.92■□□□□ 0.3
TPM3-217ENST00000504663 CEP162Q5TB80 1403 aa16.9■□□□□ 0.3
TPM3-217ENST00000504663 SYNJ2O15056 1496 aa16.86■□□□□ 0.29
TPM3-217ENST00000504663 GRIN2AQ12879 1464 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 132.4 ms