RNA–Protein interactions for RNA: ENST00000504651.5

DDR1-253, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

TSL 3

Gene DDR1, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-253ENST00000504651 NISCHQ9Y2I1 1504 aa33.24■■■□□ 2.91
DDR1-253ENST00000504651 CCDC180Q9P1Z9 1646 aa29.48■■■□□ 2.31
DDR1-253ENST00000504651 ABCC9O60706 1549 aa28.37■■■□□ 2.13
DDR1-253ENST00000504651 ZCCHC6Q5VYS8 1495 aaKnown RBP27.81■■■□□ 2.04
DDR1-253ENST00000504651 NACADO15069 1562 aa27.55■■■□□ 2
DDR1-253ENST00000504651 DCAF8L2P0C7V8 631 aa27.54■■■□□ 2
DDR1-253ENST00000504651 DCAF1Q9Y4B6 1507 aa27.52■■■□□ 2
DDR1-253ENST00000504651 RB1CC1Q8TDY2 1594 aa27.51■■□□□ 1.99
DDR1-253ENST00000504651 MYO15BQ96JP2 1530 aa27.48■■□□□ 1.99
DDR1-253ENST00000504651 UNC13AQ9UPW8 1703 aa26.96■■□□□ 1.91
DDR1-253ENST00000504651 SCRIBQ14160 1630 aa26.92■■□□□ 1.9
DDR1-253ENST00000504651 BICRAQ9NZM4 1560 aa26.63■■□□□ 1.85
DDR1-253ENST00000504651 PABPN1Q86U42 306 aaKnown RBP eCLIP26.51■■□□□ 1.83
DDR1-253ENST00000504651 SHROOM4Q9ULL8 1493 aa26.5■■□□□ 1.83
DDR1-253ENST00000504651 EIF4G1Q04637 1599 aaKnown RBP25.91■■□□□ 1.74
DDR1-253ENST00000504651 CECR2Q9BXF3 1484 aa25.83■■□□□ 1.73
DDR1-253ENST00000504651 BAZ1AQ9NRL2 1556 aaPredicted RBP25.78■■□□□ 1.72
DDR1-253ENST00000504651 SMARCA4P51532 1647 aa25.77■■□□□ 1.72
DDR1-253ENST00000504651 CC2D2AQ9P2K1 1620 aa25.71■■□□□ 1.71
DDR1-253ENST00000504651 MROH2BQ7Z745 1585 aa25.64■■□□□ 1.69
DDR1-253ENST00000504651 DNAJC5BQ9UF47 199 aa25.55■■□□□ 1.68
DDR1-253ENST00000504651 SMARCA2P51531 1590 aa25.49■■□□□ 1.67
DDR1-253ENST00000504651 PEG3Q9GZU2 1588 aa25.48■■□□□ 1.67
DDR1-253ENST00000504651 ATAD2BQ9ULI0 1458 aa25.45■■□□□ 1.66
DDR1-253ENST00000504651 RSF1Q96T23 1441 aaPredicted RBP25.45■■□□□ 1.66
DDR1-253ENST00000504651 WIZO95785 1651 aa25.42■■□□□ 1.66
DDR1-253ENST00000504651 NCAPD3P42695 1498 aa25.35■■□□□ 1.65
DDR1-253ENST00000504651 HMGXB3Q12766 1538 aa25.35■■□□□ 1.65
DDR1-253ENST00000504651 BAZ1BQ9UIG0 1483 aaKnown RBP25.31■■□□□ 1.64
DDR1-253ENST00000504651 TOP2AP11388 1531 aaKnown RBP25.17■■□□□ 1.62
DDR1-253ENST00000504651 SUPT5HO00267 1087 aaKnown RBP25.09■■□□□ 1.61
DDR1-253ENST00000504651 CCDC88BA6NC98 1476 aa24.81■■□□□ 1.56
DDR1-253ENST00000504651 LAMC3Q9Y6N6 1575 aa24.71■■□□□ 1.55
DDR1-253ENST00000504651 NESP48681 1621 aa24.67■■□□□ 1.54
DDR1-253ENST00000504651 CADPSQ9ULU8 1353 aa24.63■■□□□ 1.53
DDR1-253ENST00000504651 PRDM2Q13029 1718 aa24.61■■□□□ 1.53
DDR1-253ENST00000504651 CFTRP13569 1480 aa24.59■■□□□ 1.53
DDR1-253ENST00000504651 KIF21AQ7Z4S6 1674 aa24.48■■□□□ 1.51
DDR1-253ENST00000504651 PDS5BQ9NTI5 1447 aa24.46■■□□□ 1.51
DDR1-253ENST00000504651 ERCC6Q03468 1493 aa24.45■■□□□ 1.5
DDR1-253ENST00000504651 FANCD2Q9BXW9 1451 aa24.4■■□□□ 1.5
DDR1-253ENST00000504651 CEP164Q9UPV0 1460 aa24.36■■□□□ 1.49
DDR1-253ENST00000504651 THOC2Q8NI27 1593 aaKnown RBP24.28■■□□□ 1.48
DDR1-253ENST00000504651 MRC2Q9UBG0 1479 aa24.23■■□□□ 1.47
DDR1-253ENST00000504651 WDR62O43379 1518 aa24.15■■□□□ 1.46
DDR1-253ENST00000504651 URB2Q14146 1524 aaKnown RBP24.14■■□□□ 1.45
DDR1-253ENST00000504651 DNMBPQ6XZF7 1577 aa24.11■■□□□ 1.45
DDR1-253ENST00000504651 ABCC8Q09428 1581 aa24.1■■□□□ 1.45
DDR1-253ENST00000504651 TOPBP1Q92547 1522 aa24.06■■□□□ 1.44
DDR1-253ENST00000504651 CUX1P39880 1505 aa24.04■■□□□ 1.44
DDR1-253ENST00000504651 CUX2O14529 1486 aa24.02■■□□□ 1.44
DDR1-253ENST00000504651 WRNQ14191 1432 aaPredicted RBP eCLIP24.01■■□□□ 1.43
DDR1-253ENST00000504651 BIVM-ERCC5R4GMW8 1640 aa23.99■■□□□ 1.43
DDR1-253ENST00000504651 SYNJ1O43426 1573 aa23.99■■□□□ 1.43
DDR1-253ENST00000504651 TOP2BQ02880 1626 aa23.96■■□□□ 1.43
DDR1-253ENST00000504651 FGD5Q6ZNL6 1462 aa23.9■■□□□ 1.42
DDR1-253ENST00000504651 POLA1P09884 1462 aaPredicted RBP23.88■■□□□ 1.41
DDR1-253ENST00000504651 IFT140Q96RY7 1462 aa23.81■■□□□ 1.4
DDR1-253ENST00000504651 TARBP1Q13395 1621 aaKnown RBP23.79■■□□□ 1.4
DDR1-253ENST00000504651 WDR97A6NE52 1622 aa23.77■■□□□ 1.4
DDR1-253ENST00000504651 SOGA1O94964 1423 aa23.76■■□□□ 1.39
DDR1-253ENST00000504651 RAD54L2Q9Y4B4 1467 aa23.75■■□□□ 1.39
DDR1-253ENST00000504651 EIF4G3O43432 1585 aaKnown RBP23.67■■□□□ 1.38
DDR1-253ENST00000504651 TRIM41Q8WV44 630 aa23.67■■□□□ 1.38
DDR1-253ENST00000504651 ABCA10Q8WWZ4 1543 aa23.67■■□□□ 1.38
DDR1-253ENST00000504651 ZNF608Q9ULD9 1512 aaPredicted RBP23.65■■□□□ 1.38
DDR1-253ENST00000504651 CHIC1Q5VXU3 224 aa23.62■■□□□ 1.37
DDR1-253ENST00000504651 ABCA5Q8WWZ7 1642 aa23.6■■□□□ 1.37
DDR1-253ENST00000504651 TDRD9Q8NDG6 1382 aaKnown RBP23.56■■□□□ 1.36
DDR1-253ENST00000504651 PBRM1Q86U86 1689 aa23.56■■□□□ 1.36
DDR1-253ENST00000504651 AQRO60306 1485 aaKnown RBP eCLIP23.55■■□□□ 1.362e-7■■■■■ 31.6
DDR1-253ENST00000504651 GAPVD1Q14C86 1478 aa23.51■■□□□ 1.35
DDR1-253ENST00000504651 KIF27Q86VH2 1401 aa23.48■■□□□ 1.35
DDR1-253ENST00000504651 GRIN2BQ13224 1484 aa23.46■■□□□ 1.35
DDR1-253ENST00000504651 ERICH3Q5RHP9 1530 aa23.41■■□□□ 1.34
DDR1-253ENST00000504651 SNAPC4Q5SXM2 1469 aa23.41■■□□□ 1.34
DDR1-253ENST00000504651 RUSC2Q8N2Y8 1516 aa23.38■■□□□ 1.33
DDR1-253ENST00000504651 MAGI1Q96QZ7 1491 aaPredicted RBP23.37■■□□□ 1.33
DDR1-253ENST00000504651 ADAMTS12P58397 1594 aa23.35■■□□□ 1.33
DDR1-253ENST00000504651 CUL7Q14999 1698 aa23.34■■□□□ 1.33
DDR1-253ENST00000504651 CHD1O14646 1710 aa23.31■■□□□ 1.32
DDR1-253ENST00000504651 EEA1Q15075 1411 aa23.31■■□□□ 1.32
DDR1-253ENST00000504651 SYNJ2O15056 1496 aa23.26■■□□□ 1.31
DDR1-253ENST00000504651 IGF1RP08069 1367 aa23.26■■□□□ 1.31
DDR1-253ENST00000504651 FHAD1B1AJZ9 1412 aa23.25■■□□□ 1.31
DDR1-253ENST00000504651 FAM9AQ8IZU1 332 aaPredicted RBP23.19■■□□□ 1.3
DDR1-253ENST00000504651 FBLN2P98095 1184 aa23.18■■□□□ 1.3
DDR1-253ENST00000504651 GRIN2AQ12879 1464 aa23.17■■□□□ 1.3
DDR1-253ENST00000504651 CARMIL1Q5VZK9 1371 aa23.17■■□□□ 1.3
DDR1-253ENST00000504651 CHMP7Q8WUX9 453 aaPredicted RBP23.16■■□□□ 1.3
DDR1-253ENST00000504651 CSRNP3Q8WYN3 585 aa23.14■■□□□ 1.29
DDR1-253ENST00000504651 PRXQ9BXM0 1461 aa23.11■■□□□ 1.29
DDR1-253ENST00000504651 RAPGEF2Q9Y4G8 1499 aa23.11■■□□□ 1.29
DDR1-253ENST00000504651 KIF21BO75037 1637 aa23.09■■□□□ 1.29
DDR1-253ENST00000504651 CEP170Q5SW79 1584 aa23.07■■□□□ 1.28
DDR1-253ENST00000504651 NUP160Q12769 1436 aa23.03■■□□□ 1.28
DDR1-253ENST00000504651 OSCARQ8IYS5 282 aa23.01■■□□□ 1.27
DDR1-253ENST00000504651 CTTNBP2Q8WZ74 1663 aa23■■□□□ 1.27
DDR1-253ENST00000504651 CLASP1Q7Z460 1538 aa23■■□□□ 1.27
DDR1-253ENST00000504651 GOLGA3Q08378 1498 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms