RNA–Protein interactions for RNA: ENST00000504557.1

HOXC9-202, Transcript of homeobox C9, humanhuman

TSL 3

Gene HOXC9, Length 581 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-202ENST00000504557 NISCHQ9Y2I1 1504 aa34.86■■■■□ 3.17
HOXC9-202ENST00000504557 CCDC180Q9P1Z9 1646 aa31.12■■■□□ 2.57
HOXC9-202ENST00000504557 ABCC9O60706 1549 aa30.77■■■□□ 2.52
HOXC9-202ENST00000504557 DCAF8L2P0C7V8 631 aa29.44■■■□□ 2.3
HOXC9-202ENST00000504557 RB1CC1Q8TDY2 1594 aa29.41■■■□□ 2.3
HOXC9-202ENST00000504557 NACADO15069 1562 aa29.26■■■□□ 2.28
HOXC9-202ENST00000504557 ZCCHC6Q5VYS8 1495 aaKnown RBP28.97■■■□□ 2.23
HOXC9-202ENST00000504557 MYO15BQ96JP2 1530 aa28.89■■■□□ 2.22
HOXC9-202ENST00000504557 UNC13AQ9UPW8 1703 aa28.88■■■□□ 2.21
HOXC9-202ENST00000504557 PABPN1Q86U42 306 aaKnown RBP eCLIP28.72■■■□□ 2.19
HOXC9-202ENST00000504557 DCAF1Q9Y4B6 1507 aa28.72■■■□□ 2.19
HOXC9-202ENST00000504557 BICRAQ9NZM4 1560 aa28.52■■■□□ 2.16
HOXC9-202ENST00000504557 SCRIBQ14160 1630 aa28.51■■■□□ 2.15
HOXC9-202ENST00000504557 DNAJC5BQ9UF47 199 aa28.38■■■□□ 2.13
HOXC9-202ENST00000504557 SHROOM4Q9ULL8 1493 aa28.04■■■□□ 2.08
HOXC9-202ENST00000504557 EIF4G1Q04637 1599 aaKnown RBP27.8■■■□□ 2.04
HOXC9-202ENST00000504557 CC2D2AQ9P2K1 1620 aa27.79■■■□□ 2.04
HOXC9-202ENST00000504557 CECR2Q9BXF3 1484 aa27.6■■■□□ 2.01
HOXC9-202ENST00000504557 SMARCA4P51532 1647 aa27.16■■□□□ 1.94
HOXC9-202ENST00000504557 BAZ1AQ9NRL2 1556 aaPredicted RBP27.05■■□□□ 1.92
HOXC9-202ENST00000504557 ATAD2BQ9ULI0 1458 aa27■■□□□ 1.91
HOXC9-202ENST00000504557 SMARCA2P51531 1590 aa26.97■■□□□ 1.91
HOXC9-202ENST00000504557 NCAPD3P42695 1498 aa26.96■■□□□ 1.91
HOXC9-202ENST00000504557 MROH2BQ7Z745 1585 aa26.92■■□□□ 1.9
HOXC9-202ENST00000504557 HMGXB3Q12766 1538 aa26.85■■□□□ 1.89
HOXC9-202ENST00000504557 BAZ1BQ9UIG0 1483 aaKnown RBP26.83■■□□□ 1.89
HOXC9-202ENST00000504557 PEG3Q9GZU2 1588 aa26.77■■□□□ 1.88
HOXC9-202ENST00000504557 WIZO95785 1651 aa26.7■■□□□ 1.86
HOXC9-202ENST00000504557 NESP48681 1621 aa26.55■■□□□ 1.84
HOXC9-202ENST00000504557 ERCC6Q03468 1493 aa26.53■■□□□ 1.84
HOXC9-202ENST00000504557 RSF1Q96T23 1441 aaPredicted RBP26.48■■□□□ 1.83
HOXC9-202ENST00000504557 LAMC3Q9Y6N6 1575 aa26.36■■□□□ 1.81
HOXC9-202ENST00000504557 TOP2AP11388 1531 aaKnown RBP26.29■■□□□ 1.8
HOXC9-202ENST00000504557 KIF21AQ7Z4S6 1674 aa26.28■■□□□ 1.8
HOXC9-202ENST00000504557 CADPSQ9ULU8 1353 aa26.2■■□□□ 1.79
HOXC9-202ENST00000504557 CUX2O14529 1486 aa26.2■■□□□ 1.78
HOXC9-202ENST00000504557 PDS5BQ9NTI5 1447 aa26.17■■□□□ 1.78
HOXC9-202ENST00000504557 THOC2Q8NI27 1593 aaKnown RBP26.15■■□□□ 1.78
HOXC9-202ENST00000504557 CCDC88BA6NC98 1476 aa26■■□□□ 1.75
HOXC9-202ENST00000504557 CFTRP13569 1480 aa25.98■■□□□ 1.75
HOXC9-202ENST00000504557 FANCD2Q9BXW9 1451 aa25.97■■□□□ 1.75
HOXC9-202ENST00000504557 CEP164Q9UPV0 1460 aa25.97■■□□□ 1.75
HOXC9-202ENST00000504557 MRC2Q9UBG0 1479 aa25.95■■□□□ 1.74
HOXC9-202ENST00000504557 PRDM2Q13029 1718 aa25.94■■□□□ 1.74
HOXC9-202ENST00000504557 WDR62O43379 1518 aa25.85■■□□□ 1.73
HOXC9-202ENST00000504557 SUPT5HO00267 1087 aaKnown RBP25.82■■□□□ 1.72
HOXC9-202ENST00000504557 URB2Q14146 1524 aaKnown RBP25.73■■□□□ 1.71
HOXC9-202ENST00000504557 DNAJC5Q9H3Z4 198 aa25.67■■□□□ 1.7
HOXC9-202ENST00000504557 TOPBP1Q92547 1522 aa25.53■■□□□ 1.68
HOXC9-202ENST00000504557 DNMBPQ6XZF7 1577 aa25.48■■□□□ 1.67
HOXC9-202ENST00000504557 ABCC8Q09428 1581 aa25.43■■□□□ 1.66
HOXC9-202ENST00000504557 IFT140Q96RY7 1462 aa25.38■■□□□ 1.65
HOXC9-202ENST00000504557 ZNF608Q9ULD9 1512 aaPredicted RBP25.36■■□□□ 1.65
HOXC9-202ENST00000504557 POLA1P09884 1462 aaPredicted RBP25.28■■□□□ 1.64
HOXC9-202ENST00000504557 EIF4G3O43432 1585 aaKnown RBP25.27■■□□□ 1.64
HOXC9-202ENST00000504557 CUX1P39880 1505 aa25.27■■□□□ 1.64
HOXC9-202ENST00000504557 TARBP1Q13395 1621 aaKnown RBP25.26■■□□□ 1.63
HOXC9-202ENST00000504557 FGD5Q6ZNL6 1462 aa25.23■■□□□ 1.63
HOXC9-202ENST00000504557 RAD54L2Q9Y4B4 1467 aa25.23■■□□□ 1.63
HOXC9-202ENST00000504557 AQRO60306 1485 aaKnown RBP eCLIP25.19■■□□□ 1.62
HOXC9-202ENST00000504557 SOGA1O94964 1423 aa25.19■■□□□ 1.62
HOXC9-202ENST00000504557 OSCARQ8IYS5 282 aa25.12■■□□□ 1.61
HOXC9-202ENST00000504557 TDRD9Q8NDG6 1382 aaKnown RBP25.11■■□□□ 1.61
HOXC9-202ENST00000504557 CHD1O14646 1710 aa25.07■■□□□ 1.6
HOXC9-202ENST00000504557 WDR97A6NE52 1622 aa25.04■■□□□ 1.6
HOXC9-202ENST00000504557 FBLN2P98095 1184 aa25.02■■□□□ 1.6
HOXC9-202ENST00000504557 SYNJ1O43426 1573 aa25.01■■□□□ 1.59
HOXC9-202ENST00000504557 WRNQ14191 1432 aaPredicted RBP eCLIP25.01■■□□□ 1.59
HOXC9-202ENST00000504557 BIVM-ERCC5R4GMW8 1640 aa24.99■■□□□ 1.59
HOXC9-202ENST00000504557 TOP2BQ02880 1626 aa24.97■■□□□ 1.59
HOXC9-202ENST00000504557 PBRM1Q86U86 1689 aa24.96■■□□□ 1.59
HOXC9-202ENST00000504557 SNAPC4Q5SXM2 1469 aa24.96■■□□□ 1.59
HOXC9-202ENST00000504557 TRIM41Q8WV44 630 aa24.93■■□□□ 1.58
HOXC9-202ENST00000504557 ABCA10Q8WWZ4 1543 aa24.9■■□□□ 1.58
HOXC9-202ENST00000504557 GRIN2BQ13224 1484 aa24.89■■□□□ 1.58
HOXC9-202ENST00000504557 GAPVD1Q14C86 1478 aa24.89■■□□□ 1.58
HOXC9-202ENST00000504557 ABCA5Q8WWZ7 1642 aa24.87■■□□□ 1.57
HOXC9-202ENST00000504557 MAGI1Q96QZ7 1491 aaPredicted RBP24.83■■□□□ 1.57
HOXC9-202ENST00000504557 CHMP7Q8WUX9 453 aaPredicted RBP24.83■■□□□ 1.57
HOXC9-202ENST00000504557 RIMBP3CA6NJZ7 1639 aa24.83■■□□□ 1.56
HOXC9-202ENST00000504557 RIMBP3BA6NNM3 1639 aa24.83■■□□□ 1.56
HOXC9-202ENST00000504557 RIMBP3Q9UFD9 1639 aa24.83■■□□□ 1.56
HOXC9-202ENST00000504557 SYNJ2O15056 1496 aa24.76■■□□□ 1.55
HOXC9-202ENST00000504557 ARHGEF11O15085 1522 aa24.74■■□□□ 1.55
HOXC9-202ENST00000504557 ADAMTS12P58397 1594 aa24.67■■□□□ 1.54
HOXC9-202ENST00000504557 CLASP1Q7Z460 1538 aa24.65■■□□□ 1.54
HOXC9-202ENST00000504557 ERICH3Q5RHP9 1530 aa24.6■■□□□ 1.53
HOXC9-202ENST00000504557 GRIN2AQ12879 1464 aa24.59■■□□□ 1.53
HOXC9-202ENST00000504557 CYB5RLQ6IPT4 315 aa24.58■■□□□ 1.53
HOXC9-202ENST00000504557 FHAD1B1AJZ9 1412 aa24.56■■□□□ 1.52
HOXC9-202ENST00000504557 ARAP1Q96P48 1450 aa24.53■■□□□ 1.52
HOXC9-202ENST00000504557 CEP170Q5SW79 1584 aa24.52■■□□□ 1.52
HOXC9-202ENST00000504557 KIF27Q86VH2 1401 aa24.48■■□□□ 1.51
HOXC9-202ENST00000504557 NUP160Q12769 1436 aa24.44■■□□□ 1.5
HOXC9-202ENST00000504557 CUL7Q14999 1698 aa24.4■■□□□ 1.5
HOXC9-202ENST00000504557 ERCC6L2Q5T890 1561 aa24.38■■□□□ 1.49
HOXC9-202ENST00000504557 IGF1RP08069 1367 aa24.38■■□□□ 1.49
HOXC9-202ENST00000504557 SHROOM2Q13796 1616 aa24.32■■□□□ 1.48
HOXC9-202ENST00000504557 RUSC2Q8N2Y8 1516 aa24.3■■□□□ 1.48
HOXC9-202ENST00000504557 CARMIL1Q5VZK9 1371 aa24.28■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms