RNA–Protein interactions for RNA: ENST00000504526.1

TRAPPC11-203, Transcript of trafficking protein particle complex 11, humanhuman

TSL 4

Gene TRAPPC11, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC11-203ENST00000504526 NISCHQ9Y2I1 1504 aa51.76■■■■■ 5.88
TRAPPC11-203ENST00000504526 CCDC180Q9P1Z9 1646 aa46.13■■■■■ 4.97
TRAPPC11-203ENST00000504526 ABCC9O60706 1549 aa45.31■■■■■ 4.84
TRAPPC11-203ENST00000504526 RB1CC1Q8TDY2 1594 aa43.54■■■■■ 4.56
TRAPPC11-203ENST00000504526 NACADO15069 1562 aa43.45■■■■■ 4.55
TRAPPC11-203ENST00000504526 DCAF8L2P0C7V8 631 aa43.32■■■■■ 4.53
TRAPPC11-203ENST00000504526 MYO15BQ96JP2 1530 aa43.16■■■■■ 4.5
TRAPPC11-203ENST00000504526 ZCCHC6Q5VYS8 1495 aaKnown RBP43.07■■■■■ 4.49
TRAPPC11-203ENST00000504526 DCAF1Q9Y4B6 1507 aa42.87■■■■■ 4.45
TRAPPC11-203ENST00000504526 UNC13AQ9UPW8 1703 aa42.43■■■■■ 4.38
TRAPPC11-203ENST00000504526 PABPN1Q86U42 306 aaKnown RBP eCLIP42.28■■■■■ 4.36
TRAPPC11-203ENST00000504526 BICRAQ9NZM4 1560 aa42.16■■■■■ 4.34
TRAPPC11-203ENST00000504526 SCRIBQ14160 1630 aa42■■■■■ 4.31
TRAPPC11-203ENST00000504526 SHROOM4Q9ULL8 1493 aa41.84■■■■■ 4.29
TRAPPC11-203ENST00000504526 DNAJC5BQ9UF47 199 aa41.74■■■■■ 4.27
TRAPPC11-203ENST00000504526 EIF4G1Q04637 1599 aaKnown RBP41.1■■■■■ 4.17
TRAPPC11-203ENST00000504526 CC2D2AQ9P2K1 1620 aa40.97■■■■■ 4.15
TRAPPC11-203ENST00000504526 CECR2Q9BXF3 1484 aa40.77■■■■■ 4.12
TRAPPC11-203ENST00000504526 SMARCA4P51532 1647 aa40.19■■■■■ 4.02
TRAPPC11-203ENST00000504526 BAZ1AQ9NRL2 1556 aaPredicted RBP40.17■■■■■ 4.02
TRAPPC11-203ENST00000504526 NCAPD3P42695 1498 aa40.1■■■■■ 4.01
TRAPPC11-203ENST00000504526 ATAD2BQ9ULI0 1458 aa40.06■■■■■ 4
TRAPPC11-203ENST00000504526 SMARCA2P51531 1590 aa40.02■■■■■ 4
TRAPPC11-203ENST00000504526 HMGXB3Q12766 1538 aa39.87■■■■□ 3.97
TRAPPC11-203ENST00000504526 MROH2BQ7Z745 1585 aa39.85■■■■□ 3.97
TRAPPC11-203ENST00000504526 PEG3Q9GZU2 1588 aa39.84■■■■□ 3.97
TRAPPC11-203ENST00000504526 BAZ1BQ9UIG0 1483 aaKnown RBP39.72■■■■□ 3.95
TRAPPC11-203ENST00000504526 WIZO95785 1651 aa39.38■■■■□ 3.89
TRAPPC11-203ENST00000504526 RSF1Q96T23 1441 aaPredicted RBP39.33■■■■□ 3.89
TRAPPC11-203ENST00000504526 ERCC6Q03468 1493 aa39.11■■■■□ 3.85
TRAPPC11-203ENST00000504526 NESP48681 1621 aa39.11■■■■□ 3.85
TRAPPC11-203ENST00000504526 LAMC3Q9Y6N6 1575 aa39.07■■■■□ 3.84
TRAPPC11-203ENST00000504526 TOP2AP11388 1531 aaKnown RBP39.02■■■■□ 3.84
TRAPPC11-203ENST00000504526 CADPSQ9ULU8 1353 aa38.92■■■■□ 3.82
TRAPPC11-203ENST00000504526 PDS5BQ9NTI5 1447 aa38.84■■■■□ 3.81
TRAPPC11-203ENST00000504526 CUX2O14529 1486 aa38.81■■■■□ 3.8
TRAPPC11-203ENST00000504526 KIF21AQ7Z4S6 1674 aa38.63■■■■□ 3.77
TRAPPC11-203ENST00000504526 CFTRP13569 1480 aa38.62■■■■□ 3.77
TRAPPC11-203ENST00000504526 THOC2Q8NI27 1593 aaKnown RBP38.59■■■■□ 3.77
TRAPPC11-203ENST00000504526 CCDC88BA6NC98 1476 aa38.54■■■■□ 3.76
TRAPPC11-203ENST00000504526 FANCD2Q9BXW9 1451 aa38.44■■■■□ 3.74
TRAPPC11-203ENST00000504526 CEP164Q9UPV0 1460 aa38.43■■■■□ 3.74
TRAPPC11-203ENST00000504526 MRC2Q9UBG0 1479 aa38.41■■■■□ 3.74
TRAPPC11-203ENST00000504526 WDR62O43379 1518 aa38.28■■■■□ 3.72
TRAPPC11-203ENST00000504526 PRDM2Q13029 1718 aa38.26■■■■□ 3.71
TRAPPC11-203ENST00000504526 SUPT5HO00267 1087 aaKnown RBP38.14■■■■□ 3.7
TRAPPC11-203ENST00000504526 URB2Q14146 1524 aaKnown RBP38.04■■■■□ 3.68
TRAPPC11-203ENST00000504526 ABCC8Q09428 1581 aa37.86■■■■□ 3.65
TRAPPC11-203ENST00000504526 DNAJC5Q9H3Z4 198 aa37.86■■■■□ 3.65
TRAPPC11-203ENST00000504526 TOPBP1Q92547 1522 aa37.8■■■■□ 3.64
TRAPPC11-203ENST00000504526 DNMBPQ6XZF7 1577 aa37.74■■■■□ 3.63
TRAPPC11-203ENST00000504526 IFT140Q96RY7 1462 aa37.65■■■■□ 3.62
TRAPPC11-203ENST00000504526 POLA1P09884 1462 aaPredicted RBP37.45■■■■□ 3.59
TRAPPC11-203ENST00000504526 ZNF608Q9ULD9 1512 aaPredicted RBP37.42■■■■□ 3.58
TRAPPC11-203ENST00000504526 CUX1P39880 1505 aa37.4■■■■□ 3.58
TRAPPC11-203ENST00000504526 TARBP1Q13395 1621 aaKnown RBP37.38■■■■□ 3.57
TRAPPC11-203ENST00000504526 FGD5Q6ZNL6 1462 aa37.33■■■■□ 3.57
TRAPPC11-203ENST00000504526 SOGA1O94964 1423 aa37.32■■■■□ 3.56
TRAPPC11-203ENST00000504526 EIF4G3O43432 1585 aaKnown RBP37.29■■■■□ 3.56
TRAPPC11-203ENST00000504526 RAD54L2Q9Y4B4 1467 aa37.26■■■■□ 3.56
TRAPPC11-203ENST00000504526 AQRO60306 1485 aaKnown RBP eCLIP37.2■■■■□ 3.55
TRAPPC11-203ENST00000504526 OSCARQ8IYS5 282 aa37.16■■■■□ 3.54
TRAPPC11-203ENST00000504526 WDR97A6NE52 1622 aa37.16■■■■□ 3.54
TRAPPC11-203ENST00000504526 WRNQ14191 1432 aaPredicted RBP eCLIP37.12■■■■□ 3.53
TRAPPC11-203ENST00000504526 TDRD9Q8NDG6 1382 aaKnown RBP37.11■■■■□ 3.53
TRAPPC11-203ENST00000504526 TOP2BQ02880 1626 aa37.04■■■■□ 3.52
TRAPPC11-203ENST00000504526 BIVM-ERCC5R4GMW8 1640 aa37.03■■■■□ 3.52
TRAPPC11-203ENST00000504526 ABCA10Q8WWZ4 1543 aa36.99■■■■□ 3.51
TRAPPC11-203ENST00000504526 SYNJ1O43426 1573 aa36.98■■■■□ 3.51
TRAPPC11-203ENST00000504526 GRIN2BQ13224 1484 aa36.93■■■■□ 3.5
TRAPPC11-203ENST00000504526 GAPVD1Q14C86 1478 aa36.88■■■■□ 3.5
TRAPPC11-203ENST00000504526 SNAPC4Q5SXM2 1469 aa36.87■■■■□ 3.49
TRAPPC11-203ENST00000504526 MAGI1Q96QZ7 1491 aaPredicted RBP36.86■■■■□ 3.49
TRAPPC11-203ENST00000504526 CHD1O14646 1710 aa36.82■■■■□ 3.49
TRAPPC11-203ENST00000504526 ABCA5Q8WWZ7 1642 aa36.82■■■■□ 3.49
TRAPPC11-203ENST00000504526 FBLN2P98095 1184 aa36.82■■■■□ 3.48
TRAPPC11-203ENST00000504526 PBRM1Q86U86 1689 aa36.77■■■■□ 3.48
TRAPPC11-203ENST00000504526 CHMP7Q8WUX9 453 aaPredicted RBP36.72■■■■□ 3.47
TRAPPC11-203ENST00000504526 SYNJ2O15056 1496 aa36.7■■■■□ 3.47
TRAPPC11-203ENST00000504526 ERICH3Q5RHP9 1530 aa36.55■■■■□ 3.44
TRAPPC11-203ENST00000504526 ARHGEF11O15085 1522 aa36.52■■■■□ 3.44
TRAPPC11-203ENST00000504526 RIMBP3CA6NJZ7 1639 aa36.52■■■■□ 3.44
TRAPPC11-203ENST00000504526 RIMBP3BA6NNM3 1639 aa36.52■■■■□ 3.44
TRAPPC11-203ENST00000504526 RIMBP3Q9UFD9 1639 aa36.52■■■■□ 3.44
TRAPPC11-203ENST00000504526 ADAMTS12P58397 1594 aa36.49■■■■□ 3.43
TRAPPC11-203ENST00000504526 TRIM41Q8WV44 630 aa36.48■■■■□ 3.43
TRAPPC11-203ENST00000504526 FHAD1B1AJZ9 1412 aa36.47■■■■□ 3.43
TRAPPC11-203ENST00000504526 CLASP1Q7Z460 1538 aa36.47■■■■□ 3.43
TRAPPC11-203ENST00000504526 GRIN2AQ12879 1464 aa36.43■■■■□ 3.42
TRAPPC11-203ENST00000504526 KIF27Q86VH2 1401 aa36.39■■■■□ 3.42
TRAPPC11-203ENST00000504526 NUP160Q12769 1436 aa36.29■■■■□ 3.4
TRAPPC11-203ENST00000504526 IGF1RP08069 1367 aa36.24■■■■□ 3.39
TRAPPC11-203ENST00000504526 CEP170Q5SW79 1584 aa36.22■■■■□ 3.39
TRAPPC11-203ENST00000504526 ARAP1Q96P48 1450 aa36.19■■■■□ 3.38
TRAPPC11-203ENST00000504526 CYB5RLQ6IPT4 315 aa36.19■■■■□ 3.38
TRAPPC11-203ENST00000504526 CUL7Q14999 1698 aa36.16■■■■□ 3.38
TRAPPC11-203ENST00000504526 CARMIL1Q5VZK9 1371 aa36.03■■■■□ 3.36
TRAPPC11-203ENST00000504526 SHROOM2Q13796 1616 aa36.01■■■■□ 3.36
TRAPPC11-203ENST00000504526 RUSC2Q8N2Y8 1516 aa35.95■■■■□ 3.35
TRAPPC11-203ENST00000504526 JPH4Q96JJ6 628 aa35.92■■■■□ 3.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms