RNA–Protein interactions for RNA: ENST00000504355.5

PDLIM3-205, Transcript of PDZ and LIM domain 3, humanhuman

TSL 3

Gene PDLIM3, Length 510 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-205ENST00000504355 NISCHQ9Y2I1 1504 aa40.18■■■■■ 4.02
PDLIM3-205ENST00000504355 ABCC9O60706 1549 aa35.91■■■■□ 3.34
PDLIM3-205ENST00000504355 CCDC180Q9P1Z9 1646 aa35.85■■■■□ 3.33
PDLIM3-205ENST00000504355 RB1CC1Q8TDY2 1594 aa34.07■■■■□ 3.05
PDLIM3-205ENST00000504355 DCAF8L2P0C7V8 631 aa33.93■■■■□ 3.02
PDLIM3-205ENST00000504355 DNAJC5BQ9UF47 199 aa33.89■■■■□ 3.02
PDLIM3-205ENST00000504355 NACADO15069 1562 aa33.82■■■■□ 3
PDLIM3-205ENST00000504355 MYO15BQ96JP2 1530 aa33.45■■■□□ 2.95
PDLIM3-205ENST00000504355 PABPN1Q86U42 306 aaKnown RBP eCLIP33.38■■■□□ 2.93
PDLIM3-205ENST00000504355 ZCCHC6Q5VYS8 1495 aaKnown RBP33.37■■■□□ 2.93
PDLIM3-205ENST00000504355 UNC13AQ9UPW8 1703 aa33.33■■■□□ 2.93
PDLIM3-205ENST00000504355 DCAF1Q9Y4B6 1507 aa33.18■■■□□ 2.9
PDLIM3-205ENST00000504355 BICRAQ9NZM4 1560 aa33.05■■■□□ 2.88
PDLIM3-205ENST00000504355 SCRIBQ14160 1630 aa32.75■■■□□ 2.83
PDLIM3-205ENST00000504355 SHROOM4Q9ULL8 1493 aa32.58■■■□□ 2.81
PDLIM3-205ENST00000504355 CC2D2AQ9P2K1 1620 aa32.44■■■□□ 2.78
PDLIM3-205ENST00000504355 CECR2Q9BXF3 1484 aa32.37■■■□□ 2.77
PDLIM3-205ENST00000504355 EIF4G1Q04637 1599 aaKnown RBP32.29■■■□□ 2.76
PDLIM3-205ENST00000504355 DNAJC5Q9H3Z4 198 aa31.35■■■□□ 2.61
PDLIM3-205ENST00000504355 SMARCA4P51532 1647 aa31.25■■■□□ 2.59
PDLIM3-205ENST00000504355 NCAPD3P42695 1498 aa31.21■■■□□ 2.59
PDLIM3-205ENST00000504355 BAZ1AQ9NRL2 1556 aaPredicted RBP31.19■■■□□ 2.58
PDLIM3-205ENST00000504355 ATAD2BQ9ULI0 1458 aa31.18■■■□□ 2.58
PDLIM3-205ENST00000504355 SMARCA2P51531 1590 aa31.14■■■□□ 2.58
PDLIM3-205ENST00000504355 CUX2O14529 1486 aa31.06■■■□□ 2.56
PDLIM3-205ENST00000504355 ERCC6Q03468 1493 aa31.05■■■□□ 2.56
PDLIM3-205ENST00000504355 HMGXB3Q12766 1538 aa31.01■■■□□ 2.55
PDLIM3-205ENST00000504355 MROH2BQ7Z745 1585 aa30.96■■■□□ 2.55
PDLIM3-205ENST00000504355 BAZ1BQ9UIG0 1483 aaKnown RBP30.95■■■□□ 2.55
PDLIM3-205ENST00000504355 PEG3Q9GZU2 1588 aa30.91■■■□□ 2.54
PDLIM3-205ENST00000504355 NESP48681 1621 aa30.76■■■□□ 2.51
PDLIM3-205ENST00000504355 WIZO95785 1651 aa30.62■■■□□ 2.49
PDLIM3-205ENST00000504355 LAMC3Q9Y6N6 1575 aa30.53■■■□□ 2.48
PDLIM3-205ENST00000504355 THOC2Q8NI27 1593 aaKnown RBP30.51■■■□□ 2.47
PDLIM3-205ENST00000504355 RSF1Q96T23 1441 aaPredicted RBP30.49■■■□□ 2.47
PDLIM3-205ENST00000504355 KIF21AQ7Z4S6 1674 aa30.39■■■□□ 2.46
PDLIM3-205ENST00000504355 PDS5BQ9NTI5 1447 aa30.35■■■□□ 2.45
PDLIM3-205ENST00000504355 CADPSQ9ULU8 1353 aa30.32■■■□□ 2.44
PDLIM3-205ENST00000504355 TOP2AP11388 1531 aaKnown RBP30.27■■■□□ 2.44
PDLIM3-205ENST00000504355 MRC2Q9UBG0 1479 aa30.1■■■□□ 2.41
PDLIM3-205ENST00000504355 WDR62O43379 1518 aa30.03■■■□□ 2.4
PDLIM3-205ENST00000504355 CFTRP13569 1480 aa30.03■■■□□ 2.4
PDLIM3-205ENST00000504355 CEP164Q9UPV0 1460 aa29.99■■■□□ 2.39
PDLIM3-205ENST00000504355 FANCD2Q9BXW9 1451 aa29.98■■■□□ 2.39
PDLIM3-205ENST00000504355 CCDC88BA6NC98 1476 aa29.94■■■□□ 2.38
PDLIM3-205ENST00000504355 TRIM41Q8WV44 630 aa29.91■■■□□ 2.38
PDLIM3-205ENST00000504355 PRDM2Q13029 1718 aa29.72■■■□□ 2.35
PDLIM3-205ENST00000504355 URB2Q14146 1524 aaKnown RBP29.67■■■□□ 2.34
PDLIM3-205ENST00000504355 OSCARQ8IYS5 282 aa29.62■■■□□ 2.33
PDLIM3-205ENST00000504355 SUPT5HO00267 1087 aaKnown RBP29.6■■■□□ 2.33
PDLIM3-205ENST00000504355 TOPBP1Q92547 1522 aa29.44■■■□□ 2.3
PDLIM3-205ENST00000504355 ABCC8Q09428 1581 aa29.43■■■□□ 2.3
PDLIM3-205ENST00000504355 DNMBPQ6XZF7 1577 aa29.37■■■□□ 2.29
PDLIM3-205ENST00000504355 IFT140Q96RY7 1462 aa29.36■■■□□ 2.29
PDLIM3-205ENST00000504355 ZNF608Q9ULD9 1512 aaPredicted RBP29.3■■■□□ 2.28
PDLIM3-205ENST00000504355 RIMBP3CA6NJZ7 1639 aa29.26■■■□□ 2.27
PDLIM3-205ENST00000504355 RIMBP3BA6NNM3 1639 aa29.26■■■□□ 2.27
PDLIM3-205ENST00000504355 RIMBP3Q9UFD9 1639 aa29.26■■■□□ 2.27
PDLIM3-205ENST00000504355 EIF4G3O43432 1585 aaKnown RBP29.16■■■□□ 2.26
PDLIM3-205ENST00000504355 POLA1P09884 1462 aaPredicted RBP29.16■■■□□ 2.26
PDLIM3-205ENST00000504355 ARHGEF11O15085 1522 aa29.12■■■□□ 2.25
PDLIM3-205ENST00000504355 TARBP1Q13395 1621 aaKnown RBP29.1■■■□□ 2.25
PDLIM3-205ENST00000504355 SOGA1O94964 1423 aa29.1■■■□□ 2.25
PDLIM3-205ENST00000504355 AQRO60306 1485 aaKnown RBP eCLIP29.07■■■□□ 2.24
PDLIM3-205ENST00000504355 CUX1P39880 1505 aa29.07■■■□□ 2.24
PDLIM3-205ENST00000504355 RAD54L2Q9Y4B4 1467 aa29.07■■■□□ 2.24
PDLIM3-205ENST00000504355 FGD5Q6ZNL6 1462 aa29.06■■■□□ 2.24
PDLIM3-205ENST00000504355 CHD1O14646 1710 aa29.03■■■□□ 2.24
PDLIM3-205ENST00000504355 TDRD9Q8NDG6 1382 aaKnown RBP28.98■■■□□ 2.23
PDLIM3-205ENST00000504355 CYB5RLQ6IPT4 315 aa28.95■■■□□ 2.22
PDLIM3-205ENST00000504355 FBLN2P98095 1184 aa28.92■■■□□ 2.22
PDLIM3-205ENST00000504355 WDR97A6NE52 1622 aa28.86■■■□□ 2.21
PDLIM3-205ENST00000504355 ARAP1Q96P48 1450 aa28.8■■■□□ 2.2
PDLIM3-205ENST00000504355 WRNQ14191 1432 aaPredicted RBP eCLIP28.8■■■□□ 2.2
PDLIM3-205ENST00000504355 SNAPC4Q5SXM2 1469 aa28.78■■■□□ 2.2
PDLIM3-205ENST00000504355 GRIN2BQ13224 1484 aa28.77■■■□□ 2.2
PDLIM3-205ENST00000504355 TRHP20396 242 aaPredicted RBP28.75■■■□□ 2.19
PDLIM3-205ENST00000504355 GAPVD1Q14C86 1478 aa28.73■■■□□ 2.19
PDLIM3-205ENST00000504355 CHMP7Q8WUX9 453 aaPredicted RBP28.73■■■□□ 2.19
PDLIM3-205ENST00000504355 ABCA10Q8WWZ4 1543 aa28.73■■■□□ 2.19
PDLIM3-205ENST00000504355 TOP2BQ02880 1626 aa28.72■■■□□ 2.19
PDLIM3-205ENST00000504355 MAGI1Q96QZ7 1491 aaPredicted RBP28.71■■■□□ 2.19
PDLIM3-205ENST00000504355 BIVM-ERCC5R4GMW8 1640 aa28.7■■■□□ 2.19
PDLIM3-205ENST00000504355 SYNJ1O43426 1573 aa28.7■■■□□ 2.18
PDLIM3-205ENST00000504355 PBRM1Q86U86 1689 aa28.64■■■□□ 2.18
PDLIM3-205ENST00000504355 CLASP1Q7Z460 1538 aa28.63■■■□□ 2.17
PDLIM3-205ENST00000504355 ABCA5Q8WWZ7 1642 aa28.61■■■□□ 2.17
PDLIM3-205ENST00000504355 SYNJ2O15056 1496 aa28.61■■■□□ 2.17
PDLIM3-205ENST00000504355 ERICH3Q5RHP9 1530 aa28.39■■■□□ 2.14
PDLIM3-205ENST00000504355 ADAMTS12P58397 1594 aa28.39■■■□□ 2.14
PDLIM3-205ENST00000504355 FHAD1B1AJZ9 1412 aa28.38■■■□□ 2.13
PDLIM3-205ENST00000504355 GRIN2AQ12879 1464 aa28.38■■■□□ 2.13
PDLIM3-205ENST00000504355 NUP160Q12769 1436 aa28.24■■■□□ 2.11
PDLIM3-205ENST00000504355 KIF27Q86VH2 1401 aa28.24■■■□□ 2.11
PDLIM3-205ENST00000504355 CEP170Q5SW79 1584 aa28.24■■■□□ 2.11
PDLIM3-205ENST00000504355 ERCC6L2Q5T890 1561 aa28.16■■■□□ 2.1
PDLIM3-205ENST00000504355 IGF1RP08069 1367 aa28.13■■■□□ 2.09
PDLIM3-205ENST00000504355 AEBP2Q6ZN18 517 aaPredicted RBP28.13■■■□□ 2.09
PDLIM3-205ENST00000504355 CUL7Q14999 1698 aa28.07■■■□□ 2.08
PDLIM3-205ENST00000504355 SHROOM2Q13796 1616 aa28.06■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms