RNA–Protein interactions for RNA: ENST00000504101.1

POLR2J3-208, Transcript of RNA polymerase II subunit J3, humanhuman

TSL 2

Gene POLR2J3, Length 729 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3-208ENST00000504101 NISCHQ9Y2I1 1504 aa42.83■■■■■ 4.45
POLR2J3-208ENST00000504101 ABCC9O60706 1549 aa38.88■■■■□ 3.81
POLR2J3-208ENST00000504101 CCDC180Q9P1Z9 1646 aa38.59■■■■□ 3.77
POLR2J3-208ENST00000504101 RB1CC1Q8TDY2 1594 aa36.88■■■■□ 3.49
POLR2J3-208ENST00000504101 DNAJC5BQ9UF47 199 aa36.69■■■■□ 3.46
POLR2J3-208ENST00000504101 NACADO15069 1562 aa36.54■■■■□ 3.44
POLR2J3-208ENST00000504101 DCAF8L2P0C7V8 631 aa36.27■■■■□ 3.4
POLR2J3-208ENST00000504101 PABPN1Q86U42 306 aaKnown RBP eCLIP36.13■■■■□ 3.37
POLR2J3-208ENST00000504101 UNC13AQ9UPW8 1703 aa36.03■■■■□ 3.36
POLR2J3-208ENST00000504101 MYO15BQ96JP2 1530 aa35.94■■■■□ 3.34
POLR2J3-208ENST00000504101 BICRAQ9NZM4 1560 aa35.81■■■■□ 3.32
POLR2J3-208ENST00000504101 ZCCHC6Q5VYS8 1495 aaKnown RBP35.46■■■■□ 3.27
POLR2J3-208ENST00000504101 DCAF1Q9Y4B6 1507 aa35.37■■■■□ 3.25
POLR2J3-208ENST00000504101 SHROOM4Q9ULL8 1493 aa35.32■■■■□ 3.24
POLR2J3-208ENST00000504101 SCRIBQ14160 1630 aa35.15■■■■□ 3.22
POLR2J3-208ENST00000504101 CC2D2AQ9P2K1 1620 aa35.11■■■■□ 3.21
POLR2J3-208ENST00000504101 CECR2Q9BXF3 1484 aa35.06■■■■□ 3.2
POLR2J3-208ENST00000504101 EIF4G1Q04637 1599 aaKnown RBP34.96■■■■□ 3.19
POLR2J3-208ENST00000504101 DNAJC5Q9H3Z4 198 aa33.93■■■■□ 3.02
POLR2J3-208ENST00000504101 NCAPD3P42695 1498 aa33.73■■■□□ 2.99
POLR2J3-208ENST00000504101 CUX2O14529 1486 aa33.64■■■□□ 2.98
POLR2J3-208ENST00000504101 ERCC6Q03468 1493 aa33.61■■■□□ 2.97
POLR2J3-208ENST00000504101 ATAD2BQ9ULI0 1458 aa33.59■■■□□ 2.97
POLR2J3-208ENST00000504101 SMARCA2P51531 1590 aa33.5■■■□□ 2.95
POLR2J3-208ENST00000504101 SMARCA4P51532 1647 aa33.5■■■□□ 2.95
POLR2J3-208ENST00000504101 HMGXB3Q12766 1538 aa33.48■■■□□ 2.95
POLR2J3-208ENST00000504101 NESP48681 1621 aa33.31■■■□□ 2.92
POLR2J3-208ENST00000504101 BAZ1AQ9NRL2 1556 aaPredicted RBP33.29■■■□□ 2.92
POLR2J3-208ENST00000504101 BAZ1BQ9UIG0 1483 aaKnown RBP33.27■■■□□ 2.92
POLR2J3-208ENST00000504101 PEG3Q9GZU2 1588 aa33.17■■■□□ 2.9
POLR2J3-208ENST00000504101 THOC2Q8NI27 1593 aaKnown RBP33.05■■■□□ 2.88
POLR2J3-208ENST00000504101 LAMC3Q9Y6N6 1575 aa33.04■■■□□ 2.88
POLR2J3-208ENST00000504101 MROH2BQ7Z745 1585 aa33■■■□□ 2.87
POLR2J3-208ENST00000504101 KIF21AQ7Z4S6 1674 aa32.88■■■□□ 2.85
POLR2J3-208ENST00000504101 PDS5BQ9NTI5 1447 aa32.85■■■□□ 2.85
POLR2J3-208ENST00000504101 CADPSQ9ULU8 1353 aa32.7■■■□□ 2.82
POLR2J3-208ENST00000504101 MRC2Q9UBG0 1479 aa32.6■■■□□ 2.81
POLR2J3-208ENST00000504101 WIZO95785 1651 aa32.59■■■□□ 2.81
POLR2J3-208ENST00000504101 WDR62O43379 1518 aa32.53■■■□□ 2.8
POLR2J3-208ENST00000504101 CEP164Q9UPV0 1460 aa32.42■■■□□ 2.78
POLR2J3-208ENST00000504101 TRIM41Q8WV44 630 aa32.34■■■□□ 2.77
POLR2J3-208ENST00000504101 FANCD2Q9BXW9 1451 aa32.34■■■□□ 2.77
POLR2J3-208ENST00000504101 CFTRP13569 1480 aa32.26■■■□□ 2.75
POLR2J3-208ENST00000504101 RSF1Q96T23 1441 aaPredicted RBP32.2■■■□□ 2.75
POLR2J3-208ENST00000504101 TOP2AP11388 1531 aaKnown RBP32.17■■■□□ 2.74
POLR2J3-208ENST00000504101 URB2Q14146 1524 aaKnown RBP32.09■■■□□ 2.73
POLR2J3-208ENST00000504101 OSCARQ8IYS5 282 aa32.03■■■□□ 2.72
POLR2J3-208ENST00000504101 PRDM2Q13029 1718 aa31.93■■■□□ 2.7
POLR2J3-208ENST00000504101 CCDC88BA6NC98 1476 aa31.79■■■□□ 2.68
POLR2J3-208ENST00000504101 IFT140Q96RY7 1462 aa31.78■■■□□ 2.68
POLR2J3-208ENST00000504101 ZNF608Q9ULD9 1512 aaPredicted RBP31.75■■■□□ 2.67
POLR2J3-208ENST00000504101 TOPBP1Q92547 1522 aa31.69■■■□□ 2.66
POLR2J3-208ENST00000504101 RIMBP3CA6NJZ7 1639 aa31.67■■■□□ 2.66
POLR2J3-208ENST00000504101 RIMBP3BA6NNM3 1639 aa31.67■■■□□ 2.66
POLR2J3-208ENST00000504101 RIMBP3Q9UFD9 1639 aa31.67■■■□□ 2.66
POLR2J3-208ENST00000504101 ABCC8Q09428 1581 aa31.6■■■□□ 2.65
POLR2J3-208ENST00000504101 EIF4G3O43432 1585 aaKnown RBP31.57■■■□□ 2.64
POLR2J3-208ENST00000504101 DNMBPQ6XZF7 1577 aa31.56■■■□□ 2.64
POLR2J3-208ENST00000504101 ARHGEF11O15085 1522 aa31.54■■■□□ 2.64
POLR2J3-208ENST00000504101 TARBP1Q13395 1621 aaKnown RBP31.43■■■□□ 2.62
POLR2J3-208ENST00000504101 AQRO60306 1485 aaKnown RBP eCLIP31.4■■■□□ 2.624e-8■■■■□ 22.5
POLR2J3-208ENST00000504101 CHD1O14646 1710 aa31.38■■■□□ 2.61
POLR2J3-208ENST00000504101 POLA1P09884 1462 aaPredicted RBP31.35■■■□□ 2.61
POLR2J3-208ENST00000504101 CYB5RLQ6IPT4 315 aa31.3■■■□□ 2.6
POLR2J3-208ENST00000504101 FBLN2P98095 1184 aa31.26■■■□□ 2.59
POLR2J3-208ENST00000504101 RAD54L2Q9Y4B4 1467 aa31.23■■■□□ 2.59
POLR2J3-208ENST00000504101 ARAP1Q96P48 1450 aa31.21■■■□□ 2.59
POLR2J3-208ENST00000504101 SOGA1O94964 1423 aa31.18■■■□□ 2.58
POLR2J3-208ENST00000504101 TDRD9Q8NDG6 1382 aaKnown RBP31.17■■■□□ 2.58
POLR2J3-208ENST00000504101 FGD5Q6ZNL6 1462 aa31.12■■■□□ 2.57
POLR2J3-208ENST00000504101 WDR97A6NE52 1622 aa31.1■■■□□ 2.57
POLR2J3-208ENST00000504101 SNAPC4Q5SXM2 1469 aa31.1■■■□□ 2.57
POLR2J3-208ENST00000504101 TRHP20396 242 aaPredicted RBP31.06■■■□□ 2.56
POLR2J3-208ENST00000504101 CUX1P39880 1505 aa31.03■■■□□ 2.56
POLR2J3-208ENST00000504101 CLASP1Q7Z460 1538 aa31.02■■■□□ 2.56
POLR2J3-208ENST00000504101 MAGI1Q96QZ7 1491 aaPredicted RBP31.01■■■□□ 2.55
POLR2J3-208ENST00000504101 SYNJ1O43426 1573 aa30.98■■■□□ 2.55
POLR2J3-208ENST00000504101 CHMP7Q8WUX9 453 aaPredicted RBP30.98■■■□□ 2.55
POLR2J3-208ENST00000504101 GRIN2BQ13224 1484 aa30.96■■■□□ 2.55
POLR2J3-208ENST00000504101 SYNJ2O15056 1496 aa30.9■■■□□ 2.54
POLR2J3-208ENST00000504101 PBRM1Q86U86 1689 aa30.84■■■□□ 2.53
POLR2J3-208ENST00000504101 GAPVD1Q14C86 1478 aa30.82■■■□□ 2.52
POLR2J3-208ENST00000504101 ABCA10Q8WWZ4 1543 aa30.74■■■□□ 2.51
POLR2J3-208ENST00000504101 ABCA5Q8WWZ7 1642 aa30.73■■■□□ 2.51
POLR2J3-208ENST00000504101 GRIN2AQ12879 1464 aa30.57■■■□□ 2.48
POLR2J3-208ENST00000504101 SUPT5HO00267 1087 aaKnown RBP30.55■■■□□ 2.48
POLR2J3-208ENST00000504101 WRNQ14191 1432 aaPredicted RBP eCLIP30.55■■■□□ 2.48
POLR2J3-208ENST00000504101 ADAMTS12P58397 1594 aa30.54■■■□□ 2.48
POLR2J3-208ENST00000504101 ERCC6L2Q5T890 1561 aa30.5■■■□□ 2.47
POLR2J3-208ENST00000504101 NUP160Q12769 1436 aa30.48■■■□□ 2.47
POLR2J3-208ENST00000504101 CEP170Q5SW79 1584 aa30.48■■■□□ 2.47
POLR2J3-208ENST00000504101 TOP2BQ02880 1626 aa30.46■■■□□ 2.47
POLR2J3-208ENST00000504101 BIVM-ERCC5R4GMW8 1640 aa30.46■■■□□ 2.47
POLR2J3-208ENST00000504101 FHAD1B1AJZ9 1412 aa30.41■■■□□ 2.46
POLR2J3-208ENST00000504101 AEBP2Q6ZN18 517 aaPredicted RBP30.39■■■□□ 2.46
POLR2J3-208ENST00000504101 SHROOM2Q13796 1616 aa30.37■■■□□ 2.45
POLR2J3-208ENST00000504101 ERICH3Q5RHP9 1530 aa30.36■■■□□ 2.45
POLR2J3-208ENST00000504101 PRG4Q92954 1404 aaPredicted RBP30.2■■■□□ 2.42
POLR2J3-208ENST00000504101 JPH4Q96JJ6 628 aa30.14■■■□□ 2.42
POLR2J3-208ENST00000504101 KIF13AQ9H1H9 1805 aa30.13■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms