RNA–Protein interactions for RNA: ENST00000504044.1

NFKB1-204, Transcript of nuclear factor kappa B subunit 1, humanhuman

TSL 2

Gene NFKB1, Length 580 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1-204ENST00000504044 NISCHQ9Y2I1 1504 aa43.56■■■■■ 4.56
NFKB1-204ENST00000504044 CCDC180Q9P1Z9 1646 aa38.81■■■■□ 3.8
NFKB1-204ENST00000504044 ABCC9O60706 1549 aa38.2■■■■□ 3.71
NFKB1-204ENST00000504044 RB1CC1Q8TDY2 1594 aa36.71■■■■□ 3.47
NFKB1-204ENST00000504044 DCAF8L2P0C7V8 631 aa36.62■■■■□ 3.45
NFKB1-204ENST00000504044 NACADO15069 1562 aa36.61■■■■□ 3.45
NFKB1-204ENST00000504044 MYO15BQ96JP2 1530 aa36.34■■■■□ 3.41
NFKB1-204ENST00000504044 ZCCHC6Q5VYS8 1495 aaKnown RBP36.24■■■■□ 3.39
NFKB1-204ENST00000504044 DCAF1Q9Y4B6 1507 aa36.08■■■■□ 3.37
NFKB1-204ENST00000504044 PABPN1Q86U42 306 aaKnown RBP eCLIP35.68■■■■□ 3.3
NFKB1-204ENST00000504044 UNC13AQ9UPW8 1703 aa35.6■■■■□ 3.29
NFKB1-204ENST00000504044 BICRAQ9NZM4 1560 aa35.43■■■■□ 3.26
NFKB1-204ENST00000504044 SCRIBQ14160 1630 aa35.37■■■■□ 3.25
NFKB1-204ENST00000504044 SHROOM4Q9ULL8 1493 aa35.3■■■■□ 3.24
NFKB1-204ENST00000504044 DNAJC5BQ9UF47 199 aa35.15■■■■□ 3.22
NFKB1-204ENST00000504044 EIF4G1Q04637 1599 aaKnown RBP34.62■■■■□ 3.13
NFKB1-204ENST00000504044 CC2D2AQ9P2K1 1620 aa34.5■■■■□ 3.11
NFKB1-204ENST00000504044 CECR2Q9BXF3 1484 aa34.39■■■■□ 3.1
NFKB1-204ENST00000504044 BAZ1AQ9NRL2 1556 aaPredicted RBP33.85■■■■□ 3.01
NFKB1-204ENST00000504044 SMARCA4P51532 1647 aa33.82■■■■□ 3
NFKB1-204ENST00000504044 NCAPD3P42695 1498 aa33.78■■■■□ 3
NFKB1-204ENST00000504044 SMARCA2P51531 1590 aa33.75■■■□□ 2.99
NFKB1-204ENST00000504044 ATAD2BQ9ULI0 1458 aa33.74■■■□□ 2.99
NFKB1-204ENST00000504044 HMGXB3Q12766 1538 aa33.58■■■□□ 2.97
NFKB1-204ENST00000504044 MROH2BQ7Z745 1585 aa33.51■■■□□ 2.95
NFKB1-204ENST00000504044 PEG3Q9GZU2 1588 aa33.51■■■□□ 2.95
NFKB1-204ENST00000504044 BAZ1BQ9UIG0 1483 aaKnown RBP33.5■■■□□ 2.95
NFKB1-204ENST00000504044 RSF1Q96T23 1441 aaPredicted RBP33.11■■■□□ 2.89
NFKB1-204ENST00000504044 WIZO95785 1651 aa33.1■■■□□ 2.89
NFKB1-204ENST00000504044 ERCC6Q03468 1493 aa33.07■■■□□ 2.88
NFKB1-204ENST00000504044 LAMC3Q9Y6N6 1575 aa32.92■■■□□ 2.86
NFKB1-204ENST00000504044 NESP48681 1621 aa32.92■■■□□ 2.86
NFKB1-204ENST00000504044 TOP2AP11388 1531 aaKnown RBP32.84■■■□□ 2.85
NFKB1-204ENST00000504044 CADPSQ9ULU8 1353 aa32.83■■■□□ 2.85
NFKB1-204ENST00000504044 PDS5BQ9NTI5 1447 aa32.81■■■□□ 2.84
NFKB1-204ENST00000504044 CUX2O14529 1486 aa32.78■■■□□ 2.84
NFKB1-204ENST00000504044 CFTRP13569 1480 aa32.54■■■□□ 2.8
NFKB1-204ENST00000504044 KIF21AQ7Z4S6 1674 aa32.47■■■□□ 2.79
NFKB1-204ENST00000504044 THOC2Q8NI27 1593 aaKnown RBP32.47■■■□□ 2.79
NFKB1-204ENST00000504044 CCDC88BA6NC98 1476 aa32.43■■■□□ 2.78
NFKB1-204ENST00000504044 CEP164Q9UPV0 1460 aa32.42■■■□□ 2.78
NFKB1-204ENST00000504044 FANCD2Q9BXW9 1451 aa32.42■■■□□ 2.78
NFKB1-204ENST00000504044 MRC2Q9UBG0 1479 aa32.41■■■□□ 2.78
NFKB1-204ENST00000504044 WDR62O43379 1518 aa32.26■■■□□ 2.75
NFKB1-204ENST00000504044 SUPT5HO00267 1087 aaKnown RBP32.18■■■□□ 2.74
NFKB1-204ENST00000504044 PRDM2Q13029 1718 aa32.13■■■□□ 2.73
NFKB1-204ENST00000504044 URB2Q14146 1524 aaKnown RBP32.02■■■□□ 2.72
NFKB1-204ENST00000504044 DNAJC5Q9H3Z4 198 aa31.99■■■□□ 2.71
NFKB1-204ENST00000504044 ABCC8Q09428 1581 aa31.95■■■□□ 2.71
NFKB1-204ENST00000504044 TOPBP1Q92547 1522 aa31.83■■■□□ 2.69
NFKB1-204ENST00000504044 DNMBPQ6XZF7 1577 aa31.79■■■□□ 2.68
NFKB1-204ENST00000504044 IFT140Q96RY7 1462 aa31.78■■■□□ 2.68
NFKB1-204ENST00000504044 POLA1P09884 1462 aaPredicted RBP31.54■■■□□ 2.64
NFKB1-204ENST00000504044 ZNF608Q9ULD9 1512 aaPredicted RBP31.51■■■□□ 2.63
NFKB1-204ENST00000504044 SOGA1O94964 1423 aa31.48■■■□□ 2.63
NFKB1-204ENST00000504044 CUX1P39880 1505 aa31.46■■■□□ 2.63
NFKB1-204ENST00000504044 FGD5Q6ZNL6 1462 aa31.45■■■□□ 2.62
NFKB1-204ENST00000504044 OSCARQ8IYS5 282 aa31.44■■■□□ 2.62
NFKB1-204ENST00000504044 TARBP1Q13395 1621 aaKnown RBP31.42■■■□□ 2.62
NFKB1-204ENST00000504044 RAD54L2Q9Y4B4 1467 aa31.39■■■□□ 2.62
NFKB1-204ENST00000504044 EIF4G3O43432 1585 aaKnown RBP31.39■■■□□ 2.61
NFKB1-204ENST00000504044 AQRO60306 1485 aaKnown RBP eCLIP31.35■■■□□ 2.61
NFKB1-204ENST00000504044 WDR97A6NE52 1622 aa31.32■■■□□ 2.6
NFKB1-204ENST00000504044 WRNQ14191 1432 aaPredicted RBP eCLIP31.3■■■□□ 2.6
NFKB1-204ENST00000504044 TDRD9Q8NDG6 1382 aaKnown RBP31.29■■■□□ 2.6
NFKB1-204ENST00000504044 TOP2BQ02880 1626 aa31.17■■■□□ 2.58
NFKB1-204ENST00000504044 ABCA10Q8WWZ4 1543 aa31.16■■■□□ 2.58
NFKB1-204ENST00000504044 GRIN2BQ13224 1484 aa31.15■■■□□ 2.58
NFKB1-204ENST00000504044 FBLN2P98095 1184 aa31.15■■■□□ 2.58
NFKB1-204ENST00000504044 BIVM-ERCC5R4GMW8 1640 aa31.13■■■□□ 2.57
NFKB1-204ENST00000504044 GAPVD1Q14C86 1478 aa31.1■■■□□ 2.57
NFKB1-204ENST00000504044 MAGI1Q96QZ7 1491 aaPredicted RBP31.09■■■□□ 2.57
NFKB1-204ENST00000504044 SYNJ1O43426 1573 aa31.09■■■□□ 2.57
NFKB1-204ENST00000504044 SNAPC4Q5SXM2 1469 aa31.08■■■□□ 2.57
NFKB1-204ENST00000504044 CHMP7Q8WUX9 453 aaPredicted RBP31.06■■■□□ 2.56
NFKB1-204ENST00000504044 SYNJ2O15056 1496 aa30.96■■■□□ 2.55
NFKB1-204ENST00000504044 CHD1O14646 1710 aa30.96■■■□□ 2.55
NFKB1-204ENST00000504044 ABCA5Q8WWZ7 1642 aa30.96■■■□□ 2.55
NFKB1-204ENST00000504044 PBRM1Q86U86 1689 aa30.91■■■□□ 2.54
NFKB1-204ENST00000504044 TRIM41Q8WV44 630 aa30.88■■■□□ 2.53
NFKB1-204ENST00000504044 ERICH3Q5RHP9 1530 aa30.8■■■□□ 2.52
NFKB1-204ENST00000504044 ARHGEF11O15085 1522 aa30.79■■■□□ 2.52
NFKB1-204ENST00000504044 FHAD1B1AJZ9 1412 aa30.77■■■□□ 2.52
NFKB1-204ENST00000504044 RIMBP3CA6NJZ7 1639 aa30.76■■■□□ 2.51
NFKB1-204ENST00000504044 RIMBP3BA6NNM3 1639 aa30.76■■■□□ 2.51
NFKB1-204ENST00000504044 RIMBP3Q9UFD9 1639 aa30.76■■■□□ 2.51
NFKB1-204ENST00000504044 ADAMTS12P58397 1594 aa30.72■■■□□ 2.51
NFKB1-204ENST00000504044 KIF27Q86VH2 1401 aa30.71■■■□□ 2.51
NFKB1-204ENST00000504044 GRIN2AQ12879 1464 aa30.7■■■□□ 2.51
NFKB1-204ENST00000504044 CLASP1Q7Z460 1538 aa30.7■■■□□ 2.51
NFKB1-204ENST00000504044 CYB5RLQ6IPT4 315 aa30.59■■■□□ 2.49
NFKB1-204ENST00000504044 NUP160Q12769 1436 aa30.57■■■□□ 2.48
NFKB1-204ENST00000504044 IGF1RP08069 1367 aa30.52■■■□□ 2.48
NFKB1-204ENST00000504044 ARAP1Q96P48 1450 aa30.5■■■□□ 2.47
NFKB1-204ENST00000504044 CEP170Q5SW79 1584 aa30.47■■■□□ 2.47
NFKB1-204ENST00000504044 CUL7Q14999 1698 aa30.46■■■□□ 2.47
NFKB1-204ENST00000504044 CARMIL1Q5VZK9 1371 aa30.4■■■□□ 2.46
NFKB1-204ENST00000504044 JPH4Q96JJ6 628 aa30.32■■■□□ 2.44
NFKB1-204ENST00000504044 SHROOM2Q13796 1616 aa30.29■■■□□ 2.44
NFKB1-204ENST00000504044 KIAA0586Q9BVV6 1533 aa30.27■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms