RNA–Protein interactions for RNA: ENST00000503945.2

MED28-203, Transcript of mediator complex subunit 28, humanhuman

TSL 1 (best)

Gene MED28, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-203ENST00000503945 NISCHQ9Y2I1 1504 aa29.49■■■□□ 2.31
MED28-203ENST00000503945 ABCC9O60706 1549 aa26.71■■□□□ 1.87
MED28-203ENST00000503945 CCDC180Q9P1Z9 1646 aa26.47■■□□□ 1.83
MED28-203ENST00000503945 RB1CC1Q8TDY2 1594 aa25.31■■□□□ 1.64
MED28-203ENST00000503945 DNAJC5BQ9UF47 199 aa25.3■■□□□ 1.64
MED28-203ENST00000503945 NACADO15069 1562 aa25.1■■□□□ 1.61
MED28-203ENST00000503945 DCAF8L2P0C7V8 631 aa25.07■■□□□ 1.6
MED28-203ENST00000503945 PABPN1Q86U42 306 aaKnown RBP eCLIP24.91■■□□□ 1.58
MED28-203ENST00000503945 UNC13AQ9UPW8 1703 aa24.8■■□□□ 1.56
MED28-203ENST00000503945 MYO15BQ96JP2 1530 aa24.66■■□□□ 1.54
MED28-203ENST00000503945 BICRAQ9NZM4 1560 aa24.62■■□□□ 1.53
MED28-203ENST00000503945 ZCCHC6Q5VYS8 1495 aaKnown RBP24.37■■□□□ 1.49
MED28-203ENST00000503945 DCAF1Q9Y4B6 1507 aa24.3■■□□□ 1.48
MED28-203ENST00000503945 SCRIBQ14160 1630 aa24.17■■□□□ 1.46
MED28-203ENST00000503945 SHROOM4Q9ULL8 1493 aa24.15■■□□□ 1.46
MED28-203ENST00000503945 CC2D2AQ9P2K1 1620 aa24.11■■□□□ 1.45
MED28-203ENST00000503945 CECR2Q9BXF3 1484 aa24.06■■□□□ 1.44
MED28-203ENST00000503945 EIF4G1Q04637 1599 aaKnown RBP23.99■■□□□ 1.43
MED28-203ENST00000503945 DNAJC5Q9H3Z4 198 aa23.31■■□□□ 1.32
MED28-203ENST00000503945 NCAPD3P42695 1498 aa23.19■■□□□ 1.3
MED28-203ENST00000503945 ATAD2BQ9ULI0 1458 aa23.11■■□□□ 1.29
MED28-203ENST00000503945 ERCC6Q03468 1493 aa23.04■■□□□ 1.28
MED28-203ENST00000503945 CUX2O14529 1486 aa23.03■■□□□ 1.28
MED28-203ENST00000503945 SMARCA4P51532 1647 aa23.02■■□□□ 1.28
MED28-203ENST00000503945 SMARCA2P51531 1590 aa22.99■■□□□ 1.27
MED28-203ENST00000503945 HMGXB3Q12766 1538 aa22.96■■□□□ 1.27
MED28-203ENST00000503945 NESP48681 1621 aa22.92■■□□□ 1.26
MED28-203ENST00000503945 BAZ1AQ9NRL2 1556 aaPredicted RBP22.87■■□□□ 1.25
MED28-203ENST00000503945 BAZ1BQ9UIG0 1483 aaKnown RBP22.85■■□□□ 1.25
MED28-203ENST00000503945 PEG3Q9GZU2 1588 aa22.78■■□□□ 1.24
MED28-203ENST00000503945 MROH2BQ7Z745 1585 aa22.74■■□□□ 1.23
MED28-203ENST00000503945 LAMC3Q9Y6N6 1575 aa22.67■■□□□ 1.22
MED28-203ENST00000503945 THOC2Q8NI27 1593 aaKnown RBP22.65■■□□□ 1.22
MED28-203ENST00000503945 KIF21AQ7Z4S6 1674 aa22.59■■□□□ 1.21
MED28-203ENST00000503945 PDS5BQ9NTI5 1447 aa22.56■■□□□ 1.2
MED28-203ENST00000503945 CADPSQ9ULU8 1353 aa22.5■■□□□ 1.19
MED28-203ENST00000503945 WIZO95785 1651 aa22.48■■□□□ 1.19
MED28-203ENST00000503945 MRC2Q9UBG0 1479 aa22.36■■□□□ 1.17
MED28-203ENST00000503945 WDR62O43379 1518 aa22.3■■□□□ 1.16
MED28-203ENST00000503945 CEP164Q9UPV0 1460 aa22.23■■□□□ 1.15
MED28-203ENST00000503945 FANCD2Q9BXW9 1451 aa22.22■■□□□ 1.15
MED28-203ENST00000503945 TRIM41Q8WV44 630 aa22.22■■□□□ 1.15
MED28-203ENST00000503945 RSF1Q96T23 1441 aaPredicted RBP22.22■■□□□ 1.15
MED28-203ENST00000503945 CFTRP13569 1480 aa22.18■■□□□ 1.14
MED28-203ENST00000503945 TOP2AP11388 1531 aaKnown RBP22.11■■□□□ 1.13
MED28-203ENST00000503945 URB2Q14146 1524 aaKnown RBP22.06■■□□□ 1.12
MED28-203ENST00000503945 OSCARQ8IYS5 282 aa22.05■■□□□ 1.12
MED28-203ENST00000503945 PRDM2Q13029 1718 aa21.94■■□□□ 1.1
MED28-203ENST00000503945 CCDC88BA6NC98 1476 aa21.93■■□□□ 1.1
MED28-203ENST00000503945 ZNF608Q9ULD9 1512 aaPredicted RBP21.83■■□□□ 1.09
MED28-203ENST00000503945 IFT140Q96RY7 1462 aa21.81■■□□□ 1.08
MED28-203ENST00000503945 TOPBP1Q92547 1522 aa21.79■■□□□ 1.08
MED28-203ENST00000503945 RIMBP3CA6NJZ7 1639 aa21.73■■□□□ 1.07
MED28-203ENST00000503945 RIMBP3BA6NNM3 1639 aa21.73■■□□□ 1.07
MED28-203ENST00000503945 RIMBP3Q9UFD9 1639 aa21.73■■□□□ 1.07
MED28-203ENST00000503945 ABCC8Q09428 1581 aa21.71■■□□□ 1.07
MED28-203ENST00000503945 DNMBPQ6XZF7 1577 aa21.67■■□□□ 1.06
MED28-203ENST00000503945 EIF4G3O43432 1585 aaKnown RBP21.65■■□□□ 1.06
MED28-203ENST00000503945 AQRO60306 1485 aaKnown RBP eCLIP21.64■■□□□ 1.053e-10■■■□□ 18.7
MED28-203ENST00000503945 ARHGEF11O15085 1522 aa21.62■■□□□ 1.05
MED28-203ENST00000503945 TARBP1Q13395 1621 aaKnown RBP21.61■■□□□ 1.05
MED28-203ENST00000503945 CHD1O14646 1710 aa21.57■■□□□ 1.04
MED28-203ENST00000503945 CYB5RLQ6IPT4 315 aa21.56■■□□□ 1.04
MED28-203ENST00000503945 SUPT5HO00267 1087 aaKnown RBP21.55■■□□□ 1.04
MED28-203ENST00000503945 POLA1P09884 1462 aaPredicted RBP21.54■■□□□ 1.04
MED28-203ENST00000503945 FBLN2P98095 1184 aa21.54■■□□□ 1.04
MED28-203ENST00000503945 RAD54L2Q9Y4B4 1467 aa21.52■■□□□ 1.04
MED28-203ENST00000503945 SOGA1O94964 1423 aa21.49■■□□□ 1.03
MED28-203ENST00000503945 TDRD9Q8NDG6 1382 aaKnown RBP21.48■■□□□ 1.03
MED28-203ENST00000503945 ARAP1Q96P48 1450 aa21.41■■□□□ 1.02
MED28-203ENST00000503945 FGD5Q6ZNL6 1462 aa21.39■■□□□ 1.02
MED28-203ENST00000503945 CUX1P39880 1505 aa21.36■■□□□ 1.01
MED28-203ENST00000503945 TRHP20396 242 aaPredicted RBP21.36■■□□□ 1.01
MED28-203ENST00000503945 SNAPC4Q5SXM2 1469 aa21.36■■□□□ 1.01
MED28-203ENST00000503945 CHMP7Q8WUX9 453 aaPredicted RBP21.34■■□□□ 1.01
MED28-203ENST00000503945 WDR97A6NE52 1622 aa21.31■■□□□ 1
MED28-203ENST00000503945 CLASP1Q7Z460 1538 aa21.28■■□□□ 1
MED28-203ENST00000503945 GRIN2BQ13224 1484 aa21.27■■□□□ 1
MED28-203ENST00000503945 MAGI1Q96QZ7 1491 aaPredicted RBP21.27■■□□□ 1
MED28-203ENST00000503945 SYNJ1O43426 1573 aa21.24■□□□□ 0.99
MED28-203ENST00000503945 SYNJ2O15056 1496 aa21.21■□□□□ 0.99
MED28-203ENST00000503945 GAPVD1Q14C86 1478 aa21.2■□□□□ 0.98
MED28-203ENST00000503945 PBRM1Q86U86 1689 aa21.18■□□□□ 0.98
MED28-203ENST00000503945 ABCA10Q8WWZ4 1543 aa21.14■□□□□ 0.97
MED28-203ENST00000503945 ABCA5Q8WWZ7 1642 aa21.1■□□□□ 0.97
MED28-203ENST00000503945 WRNQ14191 1432 aaPredicted RBP eCLIP21.03■□□□□ 0.96
MED28-203ENST00000503945 GRIN2AQ12879 1464 aa21■□□□□ 0.95
MED28-203ENST00000503945 ERCC6L2Q5T890 1561 aa20.99■□□□□ 0.95
MED28-203ENST00000503945 TOP2BQ02880 1626 aa20.96■□□□□ 0.95
MED28-203ENST00000503945 BIVM-ERCC5R4GMW8 1640 aa20.96■□□□□ 0.95
MED28-203ENST00000503945 ADAMTS12P58397 1594 aa20.94■□□□□ 0.94
MED28-203ENST00000503945 CEP170Q5SW79 1584 aa20.94■□□□□ 0.94
MED28-203ENST00000503945 NUP160Q12769 1436 aa20.94■□□□□ 0.94
MED28-203ENST00000503945 FHAD1B1AJZ9 1412 aa20.91■□□□□ 0.94
MED28-203ENST00000503945 SHROOM2Q13796 1616 aa20.86■□□□□ 0.93
MED28-203ENST00000503945 ERICH3Q5RHP9 1530 aa20.85■□□□□ 0.93
MED28-203ENST00000503945 AEBP2Q6ZN18 517 aaPredicted RBP20.84■□□□□ 0.93
MED28-203ENST00000503945 JPH4Q96JJ6 628 aa20.8■□□□□ 0.92
MED28-203ENST00000503945 PRG4Q92954 1404 aaPredicted RBP20.78■□□□□ 0.92
MED28-203ENST00000503945 KIF13AQ9H1H9 1805 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms