RNA–Protein interactions for RNA: ENST00000503850.1

APBB3-207, Transcript of amyloid beta precursor protein binding family B member 3, humanhuman

TSL 1 (best)

Gene APBB3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APBB3-207ENST00000503850 NISCHQ9Y2I1 1504 aa50.52■■■■■ 5.68
APBB3-207ENST00000503850 CCDC180Q9P1Z9 1646 aa45.04■■■■■ 4.8
APBB3-207ENST00000503850 ABCC9O60706 1549 aa44.02■■■■■ 4.64
APBB3-207ENST00000503850 RB1CC1Q8TDY2 1594 aa42.44■■■■■ 4.39
APBB3-207ENST00000503850 NACADO15069 1562 aa42.39■■■■■ 4.38
APBB3-207ENST00000503850 MYO15BQ96JP2 1530 aa42.18■■■■■ 4.34
APBB3-207ENST00000503850 DCAF8L2P0C7V8 631 aa42.14■■■■■ 4.34
APBB3-207ENST00000503850 ZCCHC6Q5VYS8 1495 aaKnown RBP42.07■■■■■ 4.33
APBB3-207ENST00000503850 DCAF1Q9Y4B6 1507 aa41.91■■■■■ 4.3
APBB3-207ENST00000503850 UNC13AQ9UPW8 1703 aa41.33■■■■■ 4.21
APBB3-207ENST00000503850 PABPN1Q86U42 306 aaKnown RBP eCLIP41.06■■■■■ 4.16
APBB3-207ENST00000503850 BICRAQ9NZM4 1560 aa41.04■■■■■ 4.16
APBB3-207ENST00000503850 SCRIBQ14160 1630 aa40.93■■■■■ 4.14
APBB3-207ENST00000503850 SHROOM4Q9ULL8 1493 aa40.86■■■■■ 4.13
APBB3-207ENST00000503850 DNAJC5BQ9UF47 199 aa40.42■■■■■ 4.06
APBB3-207ENST00000503850 EIF4G1Q04637 1599 aaKnown RBP40.02■■■■■ 4
APBB3-207ENST00000503850 CC2D2AQ9P2K1 1620 aa39.86■■■■□ 3.97
APBB3-207ENST00000503850 CECR2Q9BXF3 1484 aa39.63■■■■□ 3.94
APBB3-207ENST00000503850 BAZ1AQ9NRL2 1556 aaPredicted RBP39.22■■■■□ 3.87
APBB3-207ENST00000503850 SMARCA4P51532 1647 aa39.22■■■■□ 3.87
APBB3-207ENST00000503850 NCAPD3P42695 1498 aa39.1■■■■□ 3.85
APBB3-207ENST00000503850 SMARCA2P51531 1590 aa39.07■■■■□ 3.84
APBB3-207ENST00000503850 ATAD2BQ9ULI0 1458 aa39.04■■■■□ 3.84
APBB3-207ENST00000503850 PEG3Q9GZU2 1588 aa38.91■■■■□ 3.82
APBB3-207ENST00000503850 HMGXB3Q12766 1538 aa38.91■■■■□ 3.82
APBB3-207ENST00000503850 MROH2BQ7Z745 1585 aa38.85■■■■□ 3.81
APBB3-207ENST00000503850 BAZ1BQ9UIG0 1483 aaKnown RBP38.73■■■■□ 3.79
APBB3-207ENST00000503850 WIZO95785 1651 aa38.4■■■■□ 3.74
APBB3-207ENST00000503850 RSF1Q96T23 1441 aaPredicted RBP38.4■■■■□ 3.74
APBB3-207ENST00000503850 TOP2AP11388 1531 aaKnown RBP38.1■■■■□ 3.69
APBB3-207ENST00000503850 LAMC3Q9Y6N6 1575 aa38.1■■■■□ 3.69
APBB3-207ENST00000503850 ERCC6Q03468 1493 aa38.04■■■■□ 3.68
APBB3-207ENST00000503850 NESP48681 1621 aa38.01■■■■□ 3.68
APBB3-207ENST00000503850 CADPSQ9ULU8 1353 aa37.93■■■■□ 3.66
APBB3-207ENST00000503850 PDS5BQ9NTI5 1447 aa37.86■■■■□ 3.65
APBB3-207ENST00000503850 CUX2O14529 1486 aa37.77■■■■□ 3.64
APBB3-207ENST00000503850 CFTRP13569 1480 aa37.68■■■■□ 3.62
APBB3-207ENST00000503850 KIF21AQ7Z4S6 1674 aa37.61■■■■□ 3.61
APBB3-207ENST00000503850 CCDC88BA6NC98 1476 aa37.59■■■■□ 3.61
APBB3-207ENST00000503850 THOC2Q8NI27 1593 aaKnown RBP37.56■■■■□ 3.6
APBB3-207ENST00000503850 FANCD2Q9BXW9 1451 aa37.45■■■■□ 3.59
APBB3-207ENST00000503850 CEP164Q9UPV0 1460 aa37.45■■■■□ 3.59
APBB3-207ENST00000503850 MRC2Q9UBG0 1479 aa37.42■■■■□ 3.58
APBB3-207ENST00000503850 PRDM2Q13029 1718 aa37.39■■■■□ 3.58
APBB3-207ENST00000503850 WDR62O43379 1518 aa37.31■■■■□ 3.56
APBB3-207ENST00000503850 SUPT5HO00267 1087 aaKnown RBP37.25■■■■□ 3.55
APBB3-207ENST00000503850 URB2Q14146 1524 aaKnown RBP37.04■■■■□ 3.52
APBB3-207ENST00000503850 ABCC8Q09428 1581 aa36.98■■■■□ 3.51
APBB3-207ENST00000503850 TOPBP1Q92547 1522 aa36.84■■■■□ 3.49
APBB3-207ENST00000503850 DNMBPQ6XZF7 1577 aa36.82■■■■□ 3.48
APBB3-207ENST00000503850 IFT140Q96RY7 1462 aa36.7■■■■□ 3.47
APBB3-207ENST00000503850 DNAJC5Q9H3Z4 198 aa36.66■■■■□ 3.46
APBB3-207ENST00000503850 POLA1P09884 1462 aaPredicted RBP36.51■■■■□ 3.44
APBB3-207ENST00000503850 CUX1P39880 1505 aa36.47■■■■□ 3.43
APBB3-207ENST00000503850 TARBP1Q13395 1621 aaKnown RBP36.44■■■■□ 3.42
APBB3-207ENST00000503850 ZNF608Q9ULD9 1512 aaPredicted RBP36.4■■■■□ 3.42
APBB3-207ENST00000503850 FGD5Q6ZNL6 1462 aa36.39■■■■□ 3.42
APBB3-207ENST00000503850 SOGA1O94964 1423 aa36.38■■■■□ 3.41
APBB3-207ENST00000503850 EIF4G3O43432 1585 aaKnown RBP36.32■■■■□ 3.4
APBB3-207ENST00000503850 WDR97A6NE52 1622 aa36.31■■■■□ 3.4
APBB3-207ENST00000503850 RAD54L2Q9Y4B4 1467 aa36.28■■■■□ 3.4
APBB3-207ENST00000503850 WRNQ14191 1432 aaPredicted RBP eCLIP36.26■■■■□ 3.4
APBB3-207ENST00000503850 AQRO60306 1485 aaKnown RBP eCLIP36.2■■■■□ 3.394e-6■■■■■ 31
APBB3-207ENST00000503850 TOP2BQ02880 1626 aa36.19■■■■□ 3.38
APBB3-207ENST00000503850 BIVM-ERCC5R4GMW8 1640 aa36.19■■■■□ 3.38
APBB3-207ENST00000503850 OSCARQ8IYS5 282 aa36.13■■■■□ 3.37
APBB3-207ENST00000503850 TDRD9Q8NDG6 1382 aaKnown RBP36.12■■■■□ 3.37
APBB3-207ENST00000503850 ABCA10Q8WWZ4 1543 aa36.1■■■■□ 3.37
APBB3-207ENST00000503850 SYNJ1O43426 1573 aa36.09■■■■□ 3.37
APBB3-207ENST00000503850 GRIN2BQ13224 1484 aa36.01■■■■□ 3.36
APBB3-207ENST00000503850 GAPVD1Q14C86 1478 aa35.97■■■■□ 3.35
APBB3-207ENST00000503850 MAGI1Q96QZ7 1491 aaPredicted RBP35.95■■■■□ 3.35
APBB3-207ENST00000503850 ABCA5Q8WWZ7 1642 aa35.93■■■■□ 3.34
APBB3-207ENST00000503850 SNAPC4Q5SXM2 1469 aa35.9■■■■□ 3.34
APBB3-207ENST00000503850 PBRM1Q86U86 1689 aa35.85■■■■□ 3.33
APBB3-207ENST00000503850 CHD1O14646 1710 aa35.84■■■■□ 3.33
APBB3-207ENST00000503850 FBLN2P98095 1184 aa35.8■■■■□ 3.32
APBB3-207ENST00000503850 SYNJ2O15056 1496 aa35.79■■■■□ 3.32
APBB3-207ENST00000503850 CHMP7Q8WUX9 453 aaPredicted RBP35.76■■■■□ 3.32
APBB3-207ENST00000503850 ERICH3Q5RHP9 1530 aa35.7■■■■□ 3.31
APBB3-207ENST00000503850 ADAMTS12P58397 1594 aa35.59■■■■□ 3.29
APBB3-207ENST00000503850 FHAD1B1AJZ9 1412 aa35.58■■■■□ 3.29
APBB3-207ENST00000503850 KIF27Q86VH2 1401 aa35.56■■■■□ 3.28
APBB3-207ENST00000503850 CLASP1Q7Z460 1538 aa35.52■■■■□ 3.28
APBB3-207ENST00000503850 GRIN2AQ12879 1464 aa35.51■■■■□ 3.28
APBB3-207ENST00000503850 ARHGEF11O15085 1522 aa35.49■■■■□ 3.27
APBB3-207ENST00000503850 RIMBP3CA6NJZ7 1639 aa35.48■■■■□ 3.27
APBB3-207ENST00000503850 RIMBP3BA6NNM3 1639 aa35.48■■■■□ 3.27
APBB3-207ENST00000503850 RIMBP3Q9UFD9 1639 aa35.48■■■■□ 3.27
APBB3-207ENST00000503850 NUP160Q12769 1436 aa35.38■■■■□ 3.25
APBB3-207ENST00000503850 IGF1RP08069 1367 aa35.36■■■■□ 3.25
APBB3-207ENST00000503850 CUL7Q14999 1698 aa35.34■■■■□ 3.25
APBB3-207ENST00000503850 TRIM41Q8WV44 630 aa35.3■■■■□ 3.24
APBB3-207ENST00000503850 CEP170Q5SW79 1584 aa35.28■■■■□ 3.24
APBB3-207ENST00000503850 ARAP1Q96P48 1450 aa35.17■■■■□ 3.22
APBB3-207ENST00000503850 CARMIL1Q5VZK9 1371 aa35.17■■■■□ 3.22
APBB3-207ENST00000503850 CYB5RLQ6IPT4 315 aa35.13■■■■□ 3.21
APBB3-207ENST00000503850 SHROOM2Q13796 1616 aa35.11■■■■□ 3.21
APBB3-207ENST00000503850 RUSC2Q8N2Y8 1516 aa35.06■■■■□ 3.2
APBB3-207ENST00000503850 KIAA0586Q9BVV6 1533 aa35.03■■■■□ 3.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms