RNA–Protein interactions for RNA: ENST00000503659.5

RNF4-204, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 558 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-204ENST00000503659 NISCHQ9Y2I1 1504 aa45.29■■■■■ 4.84
RNF4-204ENST00000503659 CCDC180Q9P1Z9 1646 aa40.49■■■■■ 4.07
RNF4-204ENST00000503659 ABCC9O60706 1549 aa39.96■■■■□ 3.99
RNF4-204ENST00000503659 RB1CC1Q8TDY2 1594 aa38.24■■■■□ 3.71
RNF4-204ENST00000503659 NACADO15069 1562 aa38.1■■■■□ 3.69
RNF4-204ENST00000503659 DCAF8L2P0C7V8 631 aa37.82■■■■□ 3.64
RNF4-204ENST00000503659 MYO15BQ96JP2 1530 aa37.75■■■■□ 3.63
RNF4-204ENST00000503659 ZCCHC6Q5VYS8 1495 aaKnown RBP37.68■■■■□ 3.62
RNF4-204ENST00000503659 UNC13AQ9UPW8 1703 aa37.5■■■■□ 3.59
RNF4-204ENST00000503659 DCAF1Q9Y4B6 1507 aa37.46■■■■□ 3.59
RNF4-204ENST00000503659 DNAJC5BQ9UF47 199 aa37.26■■■■□ 3.56
RNF4-204ENST00000503659 PABPN1Q86U42 306 aaKnown RBP eCLIP37.22■■■■□ 3.55
RNF4-204ENST00000503659 BICRAQ9NZM4 1560 aa37.16■■■■□ 3.54
RNF4-204ENST00000503659 SCRIBQ14160 1630 aa36.89■■■■□ 3.5
RNF4-204ENST00000503659 SHROOM4Q9ULL8 1493 aa36.75■■■■□ 3.47
RNF4-204ENST00000503659 EIF4G1Q04637 1599 aaKnown RBP36.17■■■■□ 3.38
RNF4-204ENST00000503659 CC2D2AQ9P2K1 1620 aa36.15■■■■□ 3.38
RNF4-204ENST00000503659 CECR2Q9BXF3 1484 aa36.03■■■■□ 3.36
RNF4-204ENST00000503659 SMARCA4P51532 1647 aa35.26■■■■□ 3.24
RNF4-204ENST00000503659 NCAPD3P42695 1498 aa35.13■■■■□ 3.21
RNF4-204ENST00000503659 BAZ1AQ9NRL2 1556 aaPredicted RBP35.13■■■■□ 3.21
RNF4-204ENST00000503659 ATAD2BQ9ULI0 1458 aa35.11■■■■□ 3.21
RNF4-204ENST00000503659 SMARCA2P51531 1590 aa35.04■■■■□ 3.2
RNF4-204ENST00000503659 HMGXB3Q12766 1538 aa34.97■■■■□ 3.19
RNF4-204ENST00000503659 PEG3Q9GZU2 1588 aa34.92■■■■□ 3.18
RNF4-204ENST00000503659 MROH2BQ7Z745 1585 aa34.91■■■■□ 3.18
RNF4-204ENST00000503659 BAZ1BQ9UIG0 1483 aaKnown RBP34.78■■■■□ 3.16
RNF4-204ENST00000503659 WIZO95785 1651 aa34.56■■■■□ 3.12
RNF4-204ENST00000503659 ERCC6Q03468 1493 aa34.53■■■■□ 3.12
RNF4-204ENST00000503659 CUX2O14529 1486 aa34.46■■■■□ 3.11
RNF4-204ENST00000503659 NESP48681 1621 aa34.45■■■■□ 3.11
RNF4-204ENST00000503659 RSF1Q96T23 1441 aaPredicted RBP34.35■■■■□ 3.09
RNF4-204ENST00000503659 LAMC3Q9Y6N6 1575 aa34.3■■■■□ 3.08
RNF4-204ENST00000503659 DNAJC5Q9H3Z4 198 aa34.14■■■■□ 3.06
RNF4-204ENST00000503659 TOP2AP11388 1531 aaKnown RBP34.13■■■■□ 3.05
RNF4-204ENST00000503659 KIF21AQ7Z4S6 1674 aa34.09■■■■□ 3.05
RNF4-204ENST00000503659 PDS5BQ9NTI5 1447 aa34.09■■■■□ 3.05
RNF4-204ENST00000503659 THOC2Q8NI27 1593 aaKnown RBP34.06■■■■□ 3.04
RNF4-204ENST00000503659 CADPSQ9ULU8 1353 aa34.06■■■■□ 3.04
RNF4-204ENST00000503659 CFTRP13569 1480 aa33.82■■■■□ 3.01
RNF4-204ENST00000503659 MRC2Q9UBG0 1479 aa33.75■■■□□ 2.99
RNF4-204ENST00000503659 FANCD2Q9BXW9 1451 aa33.7■■■□□ 2.99
RNF4-204ENST00000503659 CCDC88BA6NC98 1476 aa33.69■■■□□ 2.98
RNF4-204ENST00000503659 CEP164Q9UPV0 1460 aa33.69■■■□□ 2.98
RNF4-204ENST00000503659 WDR62O43379 1518 aa33.68■■■□□ 2.98
RNF4-204ENST00000503659 PRDM2Q13029 1718 aa33.66■■■□□ 2.98
RNF4-204ENST00000503659 URB2Q14146 1524 aaKnown RBP33.43■■■□□ 2.94
RNF4-204ENST00000503659 TOPBP1Q92547 1522 aa33.14■■■□□ 2.9
RNF4-204ENST00000503659 SUPT5HO00267 1087 aaKnown RBP33.09■■■□□ 2.89
RNF4-204ENST00000503659 DNMBPQ6XZF7 1577 aa33.09■■■□□ 2.89
RNF4-204ENST00000503659 ABCC8Q09428 1581 aa33.06■■■□□ 2.88
RNF4-204ENST00000503659 IFT140Q96RY7 1462 aa33■■■□□ 2.87
RNF4-204ENST00000503659 ZNF608Q9ULD9 1512 aaPredicted RBP32.92■■■□□ 2.86
RNF4-204ENST00000503659 OSCARQ8IYS5 282 aa32.91■■■□□ 2.86
RNF4-204ENST00000503659 TARBP1Q13395 1621 aaKnown RBP32.86■■■□□ 2.85
RNF4-204ENST00000503659 POLA1P09884 1462 aaPredicted RBP32.84■■■□□ 2.85
RNF4-204ENST00000503659 EIF4G3O43432 1585 aaKnown RBP32.82■■■□□ 2.84
RNF4-204ENST00000503659 CUX1P39880 1505 aa32.79■■■□□ 2.84
RNF4-204ENST00000503659 FGD5Q6ZNL6 1462 aa32.71■■■□□ 2.83
RNF4-204ENST00000503659 RAD54L2Q9Y4B4 1467 aa32.69■■■□□ 2.82
RNF4-204ENST00000503659 AQRO60306 1485 aaKnown RBP eCLIP32.64■■■□□ 2.821e-7■■■■■ 41.5
RNF4-204ENST00000503659 TRIM41Q8WV44 630 aa32.64■■■□□ 2.82
RNF4-204ENST00000503659 SOGA1O94964 1423 aa32.63■■■□□ 2.81
RNF4-204ENST00000503659 WDR97A6NE52 1622 aa32.55■■■□□ 2.8
RNF4-204ENST00000503659 TDRD9Q8NDG6 1382 aaKnown RBP32.51■■■□□ 2.79
RNF4-204ENST00000503659 CHD1O14646 1710 aa32.5■■■□□ 2.79
RNF4-204ENST00000503659 BIVM-ERCC5R4GMW8 1640 aa32.44■■■□□ 2.78
RNF4-204ENST00000503659 SYNJ1O43426 1573 aa32.41■■■□□ 2.78
RNF4-204ENST00000503659 TOP2BQ02880 1626 aa32.4■■■□□ 2.78
RNF4-204ENST00000503659 RIMBP3CA6NJZ7 1639 aa32.39■■■□□ 2.78
RNF4-204ENST00000503659 RIMBP3BA6NNM3 1639 aa32.39■■■□□ 2.78
RNF4-204ENST00000503659 RIMBP3Q9UFD9 1639 aa32.39■■■□□ 2.78
RNF4-204ENST00000503659 WRNQ14191 1432 aaPredicted RBP eCLIP32.37■■■□□ 2.77
RNF4-204ENST00000503659 SNAPC4Q5SXM2 1469 aa32.36■■■□□ 2.77
RNF4-204ENST00000503659 ABCA10Q8WWZ4 1543 aa32.36■■■□□ 2.77
RNF4-204ENST00000503659 PBRM1Q86U86 1689 aa32.35■■■□□ 2.77
RNF4-204ENST00000503659 ABCA5Q8WWZ7 1642 aa32.33■■■□□ 2.77
RNF4-204ENST00000503659 ARHGEF11O15085 1522 aa32.33■■■□□ 2.77
RNF4-204ENST00000503659 GRIN2BQ13224 1484 aa32.33■■■□□ 2.77
RNF4-204ENST00000503659 FBLN2P98095 1184 aa32.32■■■□□ 2.76
RNF4-204ENST00000503659 MAGI1Q96QZ7 1491 aaPredicted RBP32.29■■■□□ 2.76
RNF4-204ENST00000503659 GAPVD1Q14C86 1478 aa32.29■■■□□ 2.76
RNF4-204ENST00000503659 CHMP7Q8WUX9 453 aaPredicted RBP32.18■■■□□ 2.74
RNF4-204ENST00000503659 SYNJ2O15056 1496 aa32.17■■■□□ 2.74
RNF4-204ENST00000503659 CLASP1Q7Z460 1538 aa32.11■■■□□ 2.73
RNF4-204ENST00000503659 CYB5RLQ6IPT4 315 aa32.06■■■□□ 2.72
RNF4-204ENST00000503659 ADAMTS12P58397 1594 aa32.04■■■□□ 2.72
RNF4-204ENST00000503659 ARAP1Q96P48 1450 aa32.01■■■□□ 2.71
RNF4-204ENST00000503659 ERICH3Q5RHP9 1530 aa31.98■■■□□ 2.71
RNF4-204ENST00000503659 GRIN2AQ12879 1464 aa31.93■■■□□ 2.7
RNF4-204ENST00000503659 FHAD1B1AJZ9 1412 aa31.88■■■□□ 2.69
RNF4-204ENST00000503659 CEP170Q5SW79 1584 aa31.84■■■□□ 2.69
RNF4-204ENST00000503659 NUP160Q12769 1436 aa31.82■■■□□ 2.68
RNF4-204ENST00000503659 KIF27Q86VH2 1401 aa31.7■■■□□ 2.67
RNF4-204ENST00000503659 SHROOM2Q13796 1616 aa31.67■■■□□ 2.66
RNF4-204ENST00000503659 ERCC6L2Q5T890 1561 aa31.64■■■□□ 2.66
RNF4-204ENST00000503659 CUL7Q14999 1698 aa31.64■■■□□ 2.66
RNF4-204ENST00000503659 IGF1RP08069 1367 aa31.63■■■□□ 2.65
RNF4-204ENST00000503659 TRHP20396 242 aaPredicted RBP31.62■■■□□ 2.65
RNF4-204ENST00000503659 RUSC2Q8N2Y8 1516 aa31.59■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms