RNA–Protein interactions for RNA: ENST00000503628.5

DDR1-250, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

TSL 4

Gene DDR1, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-250ENST00000503628 NISCHQ9Y2I1 1504 aa40.14■■■■■ 4.02
DDR1-250ENST00000503628 ABCC9O60706 1549 aa36.75■■■■□ 3.47
DDR1-250ENST00000503628 CCDC180Q9P1Z9 1646 aa36.19■■■■□ 3.38
DDR1-250ENST00000503628 DNAJC5BQ9UF47 199 aa34.98■■■■□ 3.19
DDR1-250ENST00000503628 RB1CC1Q8TDY2 1594 aa34.71■■■■□ 3.15
DDR1-250ENST00000503628 NACADO15069 1562 aa34.36■■■■□ 3.09
DDR1-250ENST00000503628 DCAF8L2P0C7V8 631 aa34.2■■■■□ 3.07
DDR1-250ENST00000503628 PABPN1Q86U42 306 aaKnown RBP eCLIP34.19■■■■□ 3.06
DDR1-250ENST00000503628 UNC13AQ9UPW8 1703 aa33.97■■■■□ 3.03
DDR1-250ENST00000503628 BICRAQ9NZM4 1560 aa33.75■■■□□ 2.99
DDR1-250ENST00000503628 MYO15BQ96JP2 1530 aa33.69■■■□□ 2.98
DDR1-250ENST00000503628 SHROOM4Q9ULL8 1493 aa33.16■■■□□ 2.9
DDR1-250ENST00000503628 CC2D2AQ9P2K1 1620 aa33.16■■■□□ 2.9
DDR1-250ENST00000503628 CECR2Q9BXF3 1484 aa33.14■■■□□ 2.9
DDR1-250ENST00000503628 ZCCHC6Q5VYS8 1495 aaKnown RBP33.13■■■□□ 2.89
DDR1-250ENST00000503628 DCAF1Q9Y4B6 1507 aa33.08■■■□□ 2.89
DDR1-250ENST00000503628 SCRIBQ14160 1630 aa33■■■□□ 2.87
DDR1-250ENST00000503628 EIF4G1Q04637 1599 aaKnown RBP32.95■■■□□ 2.86
DDR1-250ENST00000503628 DNAJC5Q9H3Z4 198 aa32.45■■■□□ 2.79
DDR1-250ENST00000503628 CUX2O14529 1486 aa31.83■■■□□ 2.69
DDR1-250ENST00000503628 NCAPD3P42695 1498 aa31.74■■■□□ 2.67
DDR1-250ENST00000503628 ERCC6Q03468 1493 aa31.74■■■□□ 2.67
DDR1-250ENST00000503628 ATAD2BQ9ULI0 1458 aa31.58■■■□□ 2.65
DDR1-250ENST00000503628 NESP48681 1621 aa31.44■■■□□ 2.62
DDR1-250ENST00000503628 SMARCA2P51531 1590 aa31.43■■■□□ 2.62
DDR1-250ENST00000503628 HMGXB3Q12766 1538 aa31.42■■■□□ 2.62
DDR1-250ENST00000503628 SMARCA4P51532 1647 aa31.41■■■□□ 2.62
DDR1-250ENST00000503628 BAZ1BQ9UIG0 1483 aaKnown RBP31.24■■■□□ 2.59
DDR1-250ENST00000503628 BAZ1AQ9NRL2 1556 aaPredicted RBP31.17■■■□□ 2.58
DDR1-250ENST00000503628 THOC2Q8NI27 1593 aaKnown RBP31.17■■■□□ 2.58
DDR1-250ENST00000503628 PEG3Q9GZU2 1588 aa31.09■■■□□ 2.57
DDR1-250ENST00000503628 LAMC3Q9Y6N6 1575 aa31.09■■■□□ 2.57
DDR1-250ENST00000503628 KIF21AQ7Z4S6 1674 aa31■■■□□ 2.55
DDR1-250ENST00000503628 MROH2BQ7Z745 1585 aa30.95■■■□□ 2.54
DDR1-250ENST00000503628 PDS5BQ9NTI5 1447 aa30.94■■■□□ 2.54
DDR1-250ENST00000503628 TRIM41Q8WV44 630 aa30.84■■■□□ 2.53
DDR1-250ENST00000503628 CADPSQ9ULU8 1353 aa30.77■■■□□ 2.52
DDR1-250ENST00000503628 MRC2Q9UBG0 1479 aa30.7■■■□□ 2.5
DDR1-250ENST00000503628 WDR62O43379 1518 aa30.63■■■□□ 2.49
DDR1-250ENST00000503628 WIZO95785 1651 aa30.56■■■□□ 2.48
DDR1-250ENST00000503628 CEP164Q9UPV0 1460 aa30.48■■■□□ 2.47
DDR1-250ENST00000503628 FANCD2Q9BXW9 1451 aa30.41■■■□□ 2.46
DDR1-250ENST00000503628 OSCARQ8IYS5 282 aa30.37■■■□□ 2.45
DDR1-250ENST00000503628 CFTRP13569 1480 aa30.3■■■□□ 2.44
DDR1-250ENST00000503628 URB2Q14146 1524 aaKnown RBP30.21■■■□□ 2.43
DDR1-250ENST00000503628 RSF1Q96T23 1441 aaPredicted RBP30.13■■■□□ 2.41
DDR1-250ENST00000503628 TOP2AP11388 1531 aaKnown RBP30.09■■■□□ 2.41
DDR1-250ENST00000503628 RIMBP3CA6NJZ7 1639 aa29.99■■■□□ 2.39
DDR1-250ENST00000503628 RIMBP3BA6NNM3 1639 aa29.99■■■□□ 2.39
DDR1-250ENST00000503628 RIMBP3Q9UFD9 1639 aa29.99■■■□□ 2.39
DDR1-250ENST00000503628 PRDM2Q13029 1718 aa29.93■■■□□ 2.38
DDR1-250ENST00000503628 ZNF608Q9ULD9 1512 aaPredicted RBP29.92■■■□□ 2.38
DDR1-250ENST00000503628 IFT140Q96RY7 1462 aa29.88■■■□□ 2.37
DDR1-250ENST00000503628 ARHGEF11O15085 1522 aa29.83■■■□□ 2.37
DDR1-250ENST00000503628 CCDC88BA6NC98 1476 aa29.8■■■□□ 2.36
DDR1-250ENST00000503628 TOPBP1Q92547 1522 aa29.78■■■□□ 2.36
DDR1-250ENST00000503628 CYB5RLQ6IPT4 315 aa29.71■■■□□ 2.35
DDR1-250ENST00000503628 EIF4G3O43432 1585 aaKnown RBP29.69■■■□□ 2.34
DDR1-250ENST00000503628 ABCC8Q09428 1581 aa29.66■■■□□ 2.34
DDR1-250ENST00000503628 AQRO60306 1485 aaKnown RBP eCLIP29.61■■■□□ 2.332e-7■■■■■ 31.6
DDR1-250ENST00000503628 DNMBPQ6XZF7 1577 aa29.6■■■□□ 2.33
DDR1-250ENST00000503628 CHD1O14646 1710 aa29.59■■■□□ 2.33
DDR1-250ENST00000503628 TARBP1Q13395 1621 aaKnown RBP29.56■■■□□ 2.32
DDR1-250ENST00000503628 TRHP20396 242 aaPredicted RBP29.54■■■□□ 2.32
DDR1-250ENST00000503628 FBLN2P98095 1184 aa29.54■■■□□ 2.32
DDR1-250ENST00000503628 ARAP1Q96P48 1450 aa29.51■■■□□ 2.31
DDR1-250ENST00000503628 POLA1P09884 1462 aaPredicted RBP29.44■■■□□ 2.3
DDR1-250ENST00000503628 RAD54L2Q9Y4B4 1467 aa29.38■■■□□ 2.29
DDR1-250ENST00000503628 TDRD9Q8NDG6 1382 aaKnown RBP29.35■■■□□ 2.29
DDR1-250ENST00000503628 SOGA1O94964 1423 aa29.33■■■□□ 2.29
DDR1-250ENST00000503628 SNAPC4Q5SXM2 1469 aa29.25■■■□□ 2.27
DDR1-250ENST00000503628 CLASP1Q7Z460 1538 aa29.22■■■□□ 2.27
DDR1-250ENST00000503628 CHMP7Q8WUX9 453 aaPredicted RBP29.22■■■□□ 2.27
DDR1-250ENST00000503628 FGD5Q6ZNL6 1462 aa29.19■■■□□ 2.26
DDR1-250ENST00000503628 WDR97A6NE52 1622 aa29.16■■■□□ 2.26
DDR1-250ENST00000503628 SYNJ1O43426 1573 aa29.15■■■□□ 2.26
DDR1-250ENST00000503628 MAGI1Q96QZ7 1491 aaPredicted RBP29.13■■■□□ 2.25
DDR1-250ENST00000503628 GRIN2BQ13224 1484 aa29.1■■■□□ 2.25
DDR1-250ENST00000503628 CUX1P39880 1505 aa29.1■■■□□ 2.25
DDR1-250ENST00000503628 SYNJ2O15056 1496 aa29.05■■■□□ 2.24
DDR1-250ENST00000503628 AEBP2Q6ZN18 517 aaPredicted RBP29.04■■■□□ 2.24
DDR1-250ENST00000503628 GAPVD1Q14C86 1478 aa28.96■■■□□ 2.23
DDR1-250ENST00000503628 PBRM1Q86U86 1689 aa28.95■■■□□ 2.22
DDR1-250ENST00000503628 ABCA10Q8WWZ4 1543 aa28.82■■■□□ 2.2
DDR1-250ENST00000503628 ABCA5Q8WWZ7 1642 aa28.81■■■□□ 2.2
DDR1-250ENST00000503628 ERCC6L2Q5T890 1561 aa28.77■■■□□ 2.2
DDR1-250ENST00000503628 GRIN2AQ12879 1464 aa28.72■■■□□ 2.19
DDR1-250ENST00000503628 CEP170Q5SW79 1584 aa28.67■■■□□ 2.18
DDR1-250ENST00000503628 NUP160Q12769 1436 aa28.64■■■□□ 2.18
DDR1-250ENST00000503628 ADAMTS12P58397 1594 aa28.62■■■□□ 2.17
DDR1-250ENST00000503628 WRNQ14191 1432 aaPredicted RBP eCLIP28.62■■■□□ 2.17
DDR1-250ENST00000503628 SHROOM2Q13796 1616 aa28.57■■■□□ 2.16
DDR1-250ENST00000503628 FHAD1B1AJZ9 1412 aa28.55■■■□□ 2.16
DDR1-250ENST00000503628 KIF13AQ9H1H9 1805 aa28.49■■■□□ 2.15
DDR1-250ENST00000503628 SUPT5HO00267 1087 aaKnown RBP28.49■■■□□ 2.15
DDR1-250ENST00000503628 TOP2BQ02880 1626 aa28.47■■■□□ 2.15
DDR1-250ENST00000503628 BIVM-ERCC5R4GMW8 1640 aa28.47■■■□□ 2.15
DDR1-250ENST00000503628 ERICH3Q5RHP9 1530 aa28.44■■■□□ 2.14
DDR1-250ENST00000503628 PRG4Q92954 1404 aaPredicted RBP28.43■■■□□ 2.14
DDR1-250ENST00000503628 JPH4Q96JJ6 628 aa28.41■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 140.3 ms