RNA–Protein interactions for RNA: ENST00000503123.5

RNF4-203, Transcript of ring finger protein 4, humanhuman

TSL 5

Gene RNF4, Length 298 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-203ENST00000503123 NISCHQ9Y2I1 1504 aa21.6■■□□□ 1.05
RNF4-203ENST00000503123 CCDC180Q9P1Z9 1646 aa19.38■□□□□ 0.69
RNF4-203ENST00000503123 ABCC9O60706 1549 aa18.81■□□□□ 0.6
RNF4-203ENST00000503123 RB1CC1Q8TDY2 1594 aa18.19■□□□□ 0.5
RNF4-203ENST00000503123 NACADO15069 1562 aa18.17■□□□□ 0.5
RNF4-203ENST00000503123 MYO15BQ96JP2 1530 aa18.07■□□□□ 0.48
RNF4-203ENST00000503123 ZCCHC6Q5VYS8 1495 aaKnown RBP18■□□□□ 0.47
RNF4-203ENST00000503123 DCAF1Q9Y4B6 1507 aa17.95■□□□□ 0.46
RNF4-203ENST00000503123 UNC13AQ9UPW8 1703 aa17.89■□□□□ 0.46
RNF4-203ENST00000503123 DCAF8L2P0C7V8 631 aa17.88■□□□□ 0.45
RNF4-203ENST00000503123 BICRAQ9NZM4 1560 aa17.63■□□□□ 0.41
RNF4-203ENST00000503123 SCRIBQ14160 1630 aa17.53■□□□□ 0.4
RNF4-203ENST00000503123 SHROOM4Q9ULL8 1493 aa17.5■□□□□ 0.39
RNF4-203ENST00000503123 PABPN1Q86U42 306 aaKnown RBP eCLIP17.48■□□□□ 0.39
RNF4-203ENST00000503123 DNAJC5BQ9UF47 199 aa17.26■□□□□ 0.35
RNF4-203ENST00000503123 EIF4G1Q04637 1599 aaKnown RBP17.15■□□□□ 0.34
RNF4-203ENST00000503123 CC2D2AQ9P2K1 1620 aa17.1■□□□□ 0.33
RNF4-203ENST00000503123 CECR2Q9BXF3 1484 aa16.94■□□□□ 0.3
RNF4-203ENST00000503123 SMARCA4P51532 1647 aa16.82■□□□□ 0.28
RNF4-203ENST00000503123 BAZ1AQ9NRL2 1556 aaPredicted RBP16.78■□□□□ 0.28
RNF4-203ENST00000503123 SMARCA2P51531 1590 aa16.72■□□□□ 0.27
RNF4-203ENST00000503123 NCAPD3P42695 1498 aa16.71■□□□□ 0.27
RNF4-203ENST00000503123 PEG3Q9GZU2 1588 aa16.7■□□□□ 0.26
RNF4-203ENST00000503123 HMGXB3Q12766 1538 aa16.68■□□□□ 0.26
RNF4-203ENST00000503123 ATAD2BQ9ULI0 1458 aa16.67■□□□□ 0.26
RNF4-203ENST00000503123 MROH2BQ7Z745 1585 aa16.61■□□□□ 0.25
RNF4-203ENST00000503123 BAZ1BQ9UIG0 1483 aaKnown RBP16.54■□□□□ 0.24
RNF4-203ENST00000503123 WIZO95785 1651 aa16.48■□□□□ 0.23
RNF4-203ENST00000503123 RSF1Q96T23 1441 aaPredicted RBP16.38■□□□□ 0.21
RNF4-203ENST00000503123 LAMC3Q9Y6N6 1575 aa16.34■□□□□ 0.21
RNF4-203ENST00000503123 TOP2AP11388 1531 aaKnown RBP16.3■□□□□ 0.2
RNF4-203ENST00000503123 NESP48681 1621 aa16.27■□□□□ 0.19
RNF4-203ENST00000503123 ERCC6Q03468 1493 aa16.24■□□□□ 0.19
RNF4-203ENST00000503123 KIF21AQ7Z4S6 1674 aa16.21■□□□□ 0.19
RNF4-203ENST00000503123 PRDM2Q13029 1718 aa16.19■□□□□ 0.18
RNF4-203ENST00000503123 CADPSQ9ULU8 1353 aa16.17■□□□□ 0.18
RNF4-203ENST00000503123 CUX2O14529 1486 aa16.16■□□□□ 0.18
RNF4-203ENST00000503123 THOC2Q8NI27 1593 aaKnown RBP16.15■□□□□ 0.18
RNF4-203ENST00000503123 PDS5BQ9NTI5 1447 aa16.15■□□□□ 0.18
RNF4-203ENST00000503123 CFTRP13569 1480 aa16.1■□□□□ 0.17
RNF4-203ENST00000503123 CCDC88BA6NC98 1476 aa16.05■□□□□ 0.16
RNF4-203ENST00000503123 CEP164Q9UPV0 1460 aa16.01■□□□□ 0.15
RNF4-203ENST00000503123 FANCD2Q9BXW9 1451 aa16■□□□□ 0.15
RNF4-203ENST00000503123 MRC2Q9UBG0 1479 aa16■□□□□ 0.15
RNF4-203ENST00000503123 WDR62O43379 1518 aa15.99■□□□□ 0.15
RNF4-203ENST00000503123 URB2Q14146 1524 aaKnown RBP15.85■□□□□ 0.13
RNF4-203ENST00000503123 ABCC8Q09428 1581 aa15.8■□□□□ 0.12
RNF4-203ENST00000503123 SUPT5HO00267 1087 aaKnown RBP15.79■□□□□ 0.12
RNF4-203ENST00000503123 DNMBPQ6XZF7 1577 aa15.77■□□□□ 0.11
RNF4-203ENST00000503123 TOPBP1Q92547 1522 aa15.76■□□□□ 0.11
RNF4-203ENST00000503123 IFT140Q96RY7 1462 aa15.67■□□□□ 0.1
RNF4-203ENST00000503123 DNAJC5Q9H3Z4 198 aa15.66■□□□□ 0.1
RNF4-203ENST00000503123 TARBP1Q13395 1621 aaKnown RBP15.65■□□□□ 0.1
RNF4-203ENST00000503123 POLA1P09884 1462 aaPredicted RBP15.61■□□□□ 0.09
RNF4-203ENST00000503123 CUX1P39880 1505 aa15.61■□□□□ 0.09
RNF4-203ENST00000503123 EIF4G3O43432 1585 aaKnown RBP15.59■□□□□ 0.09
RNF4-203ENST00000503123 WDR97A6NE52 1622 aa15.58■□□□□ 0.09
RNF4-203ENST00000503123 ZNF608Q9ULD9 1512 aaPredicted RBP15.56■□□□□ 0.08
RNF4-203ENST00000503123 FGD5Q6ZNL6 1462 aa15.55■□□□□ 0.08
RNF4-203ENST00000503123 BIVM-ERCC5R4GMW8 1640 aa15.54■□□□□ 0.08
RNF4-203ENST00000503123 TOP2BQ02880 1626 aa15.51■□□□□ 0.07
RNF4-203ENST00000503123 SOGA1O94964 1423 aa15.51■□□□□ 0.07
RNF4-203ENST00000503123 RAD54L2Q9Y4B4 1467 aa15.48■□□□□ 0.07
RNF4-203ENST00000503123 CHD1O14646 1710 aa15.46■□□□□ 0.07
RNF4-203ENST00000503123 SYNJ1O43426 1573 aa15.46■□□□□ 0.07
RNF4-203ENST00000503123 WRNQ14191 1432 aaPredicted RBP eCLIP15.46■□□□□ 0.07
RNF4-203ENST00000503123 PBRM1Q86U86 1689 aa15.45■□□□□ 0.06
RNF4-203ENST00000503123 AQRO60306 1485 aaKnown RBP eCLIP15.45■□□□□ 0.061e-7■■■■■ 33.9
RNF4-203ENST00000503123 ABCA10Q8WWZ4 1543 aa15.43■□□□□ 0.06
RNF4-203ENST00000503123 ABCA5Q8WWZ7 1642 aa15.42■□□□□ 0.06
RNF4-203ENST00000503123 OSCARQ8IYS5 282 aa15.39■□□□□ 0.05
RNF4-203ENST00000503123 TDRD9Q8NDG6 1382 aaKnown RBP15.38■□□□□ 0.05
RNF4-203ENST00000503123 MAGI1Q96QZ7 1491 aaPredicted RBP15.38■□□□□ 0.05
RNF4-203ENST00000503123 GRIN2BQ13224 1484 aa15.37■□□□□ 0.05
RNF4-203ENST00000503123 GAPVD1Q14C86 1478 aa15.36■□□□□ 0.05
RNF4-203ENST00000503123 SNAPC4Q5SXM2 1469 aa15.33■□□□□ 0.05
RNF4-203ENST00000503123 SYNJ2O15056 1496 aa15.29■□□□□ 0.04
RNF4-203ENST00000503123 ERICH3Q5RHP9 1530 aa15.27■□□□□ 0.04
RNF4-203ENST00000503123 ADAMTS12P58397 1594 aa15.26■□□□□ 0.03
RNF4-203ENST00000503123 RIMBP3CA6NJZ7 1639 aa15.25■□□□□ 0.03
RNF4-203ENST00000503123 RIMBP3BA6NNM3 1639 aa15.25■□□□□ 0.03
RNF4-203ENST00000503123 RIMBP3Q9UFD9 1639 aa15.25■□□□□ 0.03
RNF4-203ENST00000503123 CLASP1Q7Z460 1538 aa15.23■□□□□ 0.03
RNF4-203ENST00000503123 FBLN2P98095 1184 aa15.2■□□□□ 0.02
RNF4-203ENST00000503123 CHMP7Q8WUX9 453 aaPredicted RBP15.2■□□□□ 0.02
RNF4-203ENST00000503123 ARHGEF11O15085 1522 aa15.2■□□□□ 0.02
RNF4-203ENST00000503123 GRIN2AQ12879 1464 aa15.18■□□□□ 0.02
RNF4-203ENST00000503123 FHAD1B1AJZ9 1412 aa15.17■□□□□ 0.02
RNF4-203ENST00000503123 CUL7Q14999 1698 aa15.17■□□□□ 0.02
RNF4-203ENST00000503123 KIF27Q86VH2 1401 aa15.14■□□□□ 0.01
RNF4-203ENST00000503123 CEP170Q5SW79 1584 aa15.12■□□□□ 0.01
RNF4-203ENST00000503123 NUP160Q12769 1436 aa15.12■□□□□ 0.01
RNF4-203ENST00000503123 SHROOM2Q13796 1616 aa15.1■□□□□ 0.01
RNF4-203ENST00000503123 IGF1RP08069 1367 aa15.06■□□□□ 0
RNF4-203ENST00000503123 ARAP1Q96P48 1450 aa15.06■□□□□ 0
RNF4-203ENST00000503123 RUSC2Q8N2Y8 1516 aa15.04■□□□□ -0
RNF4-203ENST00000503123 TRIM41Q8WV44 630 aa15.03■□□□□ -0
RNF4-203ENST00000503123 CARMIL1Q5VZK9 1371 aa14.97□□□□□ -0.01
RNF4-203ENST00000503123 KIAA0586Q9BVV6 1533 aa14.96□□□□□ -0.02
RNF4-203ENST00000503123 ERCC6L2Q5T890 1561 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 293.2 ms