RNA–Protein interactions for RNA: ENST00000503002.5

RPS3A-202, Transcript of ribosomal protein S3A, humanhuman

TSL 3

Gene RPS3A, Length 480 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3A-202ENST00000503002 NISCHQ9Y2I1 1504 aa35.05■■■■□ 3.2
RPS3A-202ENST00000503002 CCDC180Q9P1Z9 1646 aa31.45■■■□□ 2.62
RPS3A-202ENST00000503002 ABCC9O60706 1549 aa30.88■■■□□ 2.53
RPS3A-202ENST00000503002 RB1CC1Q8TDY2 1594 aa29.64■■■□□ 2.34
RPS3A-202ENST00000503002 NACADO15069 1562 aa29.56■■■□□ 2.32
RPS3A-202ENST00000503002 MYO15BQ96JP2 1530 aa29.39■■■□□ 2.3
RPS3A-202ENST00000503002 ZCCHC6Q5VYS8 1495 aaKnown RBP29.19■■■□□ 2.26
RPS3A-202ENST00000503002 UNC13AQ9UPW8 1703 aa29.1■■■□□ 2.25
RPS3A-202ENST00000503002 DCAF1Q9Y4B6 1507 aa29.1■■■□□ 2.25
RPS3A-202ENST00000503002 DCAF8L2P0C7V8 631 aa28.93■■■□□ 2.22
RPS3A-202ENST00000503002 BICRAQ9NZM4 1560 aa28.89■■■□□ 2.22
RPS3A-202ENST00000503002 DNAJC5BQ9UF47 199 aa28.7■■■□□ 2.18
RPS3A-202ENST00000503002 PABPN1Q86U42 306 aaKnown RBP eCLIP28.67■■■□□ 2.18
RPS3A-202ENST00000503002 SHROOM4Q9ULL8 1493 aa28.59■■■□□ 2.17
RPS3A-202ENST00000503002 SCRIBQ14160 1630 aa28.5■■■□□ 2.15
RPS3A-202ENST00000503002 EIF4G1Q04637 1599 aaKnown RBP28.08■■■□□ 2.09
RPS3A-202ENST00000503002 CC2D2AQ9P2K1 1620 aa28.03■■■□□ 2.08
RPS3A-202ENST00000503002 CECR2Q9BXF3 1484 aa27.83■■■□□ 2.05
RPS3A-202ENST00000503002 SMARCA4P51532 1647 aa27.31■■□□□ 1.96
RPS3A-202ENST00000503002 NCAPD3P42695 1498 aa27.27■■□□□ 1.96
RPS3A-202ENST00000503002 ATAD2BQ9ULI0 1458 aa27.21■■□□□ 1.95
RPS3A-202ENST00000503002 BAZ1AQ9NRL2 1556 aaPredicted RBP27.18■■□□□ 1.94
RPS3A-202ENST00000503002 HMGXB3Q12766 1538 aa27.18■■□□□ 1.94
RPS3A-202ENST00000503002 SMARCA2P51531 1590 aa27.16■■□□□ 1.94
RPS3A-202ENST00000503002 PEG3Q9GZU2 1588 aa27.15■■□□□ 1.94
RPS3A-202ENST00000503002 MROH2BQ7Z745 1585 aa26.99■■□□□ 1.91
RPS3A-202ENST00000503002 BAZ1BQ9UIG0 1483 aaKnown RBP26.9■■□□□ 1.9
RPS3A-202ENST00000503002 NESP48681 1621 aa26.68■■□□□ 1.86
RPS3A-202ENST00000503002 WIZO95785 1651 aa26.66■■□□□ 1.86
RPS3A-202ENST00000503002 CUX2O14529 1486 aa26.62■■□□□ 1.85
RPS3A-202ENST00000503002 LAMC3Q9Y6N6 1575 aa26.62■■□□□ 1.85
RPS3A-202ENST00000503002 ERCC6Q03468 1493 aa26.59■■□□□ 1.85
RPS3A-202ENST00000503002 RSF1Q96T23 1441 aaPredicted RBP26.52■■□□□ 1.84
RPS3A-202ENST00000503002 THOC2Q8NI27 1593 aaKnown RBP26.51■■□□□ 1.83
RPS3A-202ENST00000503002 KIF21AQ7Z4S6 1674 aa26.43■■□□□ 1.82
RPS3A-202ENST00000503002 TOP2AP11388 1531 aaKnown RBP26.41■■□□□ 1.82
RPS3A-202ENST00000503002 CADPSQ9ULU8 1353 aa26.37■■□□□ 1.81
RPS3A-202ENST00000503002 PDS5BQ9NTI5 1447 aa26.33■■□□□ 1.81
RPS3A-202ENST00000503002 CFTRP13569 1480 aa26.23■■□□□ 1.79
RPS3A-202ENST00000503002 WDR62O43379 1518 aa26.19■■□□□ 1.78
RPS3A-202ENST00000503002 MRC2Q9UBG0 1479 aa26.17■■□□□ 1.78
RPS3A-202ENST00000503002 DNAJC5Q9H3Z4 198 aa26.1■■□□□ 1.77
RPS3A-202ENST00000503002 PRDM2Q13029 1718 aa26.09■■□□□ 1.77
RPS3A-202ENST00000503002 CEP164Q9UPV0 1460 aa26.09■■□□□ 1.77
RPS3A-202ENST00000503002 FANCD2Q9BXW9 1451 aa26.08■■□□□ 1.77
RPS3A-202ENST00000503002 CCDC88BA6NC98 1476 aa26.01■■□□□ 1.75
RPS3A-202ENST00000503002 URB2Q14146 1524 aaKnown RBP25.92■■□□□ 1.74
RPS3A-202ENST00000503002 TOPBP1Q92547 1522 aa25.67■■□□□ 1.7
RPS3A-202ENST00000503002 DNMBPQ6XZF7 1577 aa25.64■■□□□ 1.69
RPS3A-202ENST00000503002 ABCC8Q09428 1581 aa25.59■■□□□ 1.69
RPS3A-202ENST00000503002 IFT140Q96RY7 1462 aa25.58■■□□□ 1.69
RPS3A-202ENST00000503002 TARBP1Q13395 1621 aaKnown RBP25.5■■□□□ 1.67
RPS3A-202ENST00000503002 ZNF608Q9ULD9 1512 aaPredicted RBP25.5■■□□□ 1.67
RPS3A-202ENST00000503002 EIF4G3O43432 1585 aaKnown RBP25.46■■□□□ 1.67
RPS3A-202ENST00000503002 POLA1P09884 1462 aaPredicted RBP25.43■■□□□ 1.66
RPS3A-202ENST00000503002 CUX1P39880 1505 aa25.36■■□□□ 1.65
RPS3A-202ENST00000503002 WDR97A6NE52 1622 aa25.31■■□□□ 1.64
RPS3A-202ENST00000503002 FGD5Q6ZNL6 1462 aa25.28■■□□□ 1.64
RPS3A-202ENST00000503002 RAD54L2Q9Y4B4 1467 aa25.25■■□□□ 1.63
RPS3A-202ENST00000503002 AQRO60306 1485 aaKnown RBP eCLIP25.22■■□□□ 1.635e-10■■■■■ 33.3
RPS3A-202ENST00000503002 OSCARQ8IYS5 282 aa25.21■■□□□ 1.63
RPS3A-202ENST00000503002 SUPT5HO00267 1087 aaKnown RBP25.2■■□□□ 1.62
RPS3A-202ENST00000503002 SOGA1O94964 1423 aa25.19■■□□□ 1.62
RPS3A-202ENST00000503002 CHD1O14646 1710 aa25.18■■□□□ 1.62
RPS3A-202ENST00000503002 BIVM-ERCC5R4GMW8 1640 aa25.11■■□□□ 1.61
RPS3A-202ENST00000503002 RIMBP3CA6NJZ7 1639 aa25.08■■□□□ 1.61
RPS3A-202ENST00000503002 RIMBP3BA6NNM3 1639 aa25.08■■□□□ 1.61
RPS3A-202ENST00000503002 ABCA5Q8WWZ7 1642 aa25.08■■□□□ 1.61
RPS3A-202ENST00000503002 RIMBP3Q9UFD9 1639 aa25.08■■□□□ 1.61
RPS3A-202ENST00000503002 ABCA10Q8WWZ4 1543 aa25.07■■□□□ 1.6
RPS3A-202ENST00000503002 TDRD9Q8NDG6 1382 aaKnown RBP25.07■■□□□ 1.6
RPS3A-202ENST00000503002 TOP2BQ02880 1626 aa25.06■■□□□ 1.6
RPS3A-202ENST00000503002 SNAPC4Q5SXM2 1469 aa25.05■■□□□ 1.6
RPS3A-202ENST00000503002 MAGI1Q96QZ7 1491 aaPredicted RBP25.04■■□□□ 1.6
RPS3A-202ENST00000503002 PBRM1Q86U86 1689 aa25.04■■□□□ 1.6
RPS3A-202ENST00000503002 SYNJ1O43426 1573 aa25.03■■□□□ 1.6
RPS3A-202ENST00000503002 ARHGEF11O15085 1522 aa25.02■■□□□ 1.6
RPS3A-202ENST00000503002 GRIN2BQ13224 1484 aa25.02■■□□□ 1.6
RPS3A-202ENST00000503002 CLASP1Q7Z460 1538 aa24.97■■□□□ 1.59
RPS3A-202ENST00000503002 WRNQ14191 1432 aaPredicted RBP eCLIP24.96■■□□□ 1.59
RPS3A-202ENST00000503002 GAPVD1Q14C86 1478 aa24.95■■□□□ 1.58
RPS3A-202ENST00000503002 SYNJ2O15056 1496 aa24.93■■□□□ 1.58
RPS3A-202ENST00000503002 TRIM41Q8WV44 630 aa24.87■■□□□ 1.57
RPS3A-202ENST00000503002 ADAMTS12P58397 1594 aa24.84■■□□□ 1.57
RPS3A-202ENST00000503002 ARAP1Q96P48 1450 aa24.82■■□□□ 1.56
RPS3A-202ENST00000503002 ERICH3Q5RHP9 1530 aa24.76■■□□□ 1.55
RPS3A-202ENST00000503002 FBLN2P98095 1184 aa24.74■■□□□ 1.55
RPS3A-202ENST00000503002 GRIN2AQ12879 1464 aa24.73■■□□□ 1.55
RPS3A-202ENST00000503002 CHMP7Q8WUX9 453 aaPredicted RBP24.71■■□□□ 1.55
RPS3A-202ENST00000503002 NUP160Q12769 1436 aa24.69■■□□□ 1.54
RPS3A-202ENST00000503002 CEP170Q5SW79 1584 aa24.67■■□□□ 1.54
RPS3A-202ENST00000503002 FHAD1B1AJZ9 1412 aa24.67■■□□□ 1.54
RPS3A-202ENST00000503002 SHROOM2Q13796 1616 aa24.62■■□□□ 1.53
RPS3A-202ENST00000503002 CYB5RLQ6IPT4 315 aa24.54■■□□□ 1.52
RPS3A-202ENST00000503002 ERCC6L2Q5T890 1561 aa24.53■■□□□ 1.52
RPS3A-202ENST00000503002 RUSC2Q8N2Y8 1516 aa24.51■■□□□ 1.51
RPS3A-202ENST00000503002 CUL7Q14999 1698 aa24.47■■□□□ 1.51
RPS3A-202ENST00000503002 KIF27Q86VH2 1401 aa24.43■■□□□ 1.5
RPS3A-202ENST00000503002 IGF1RP08069 1367 aa24.41■■□□□ 1.5
RPS3A-202ENST00000503002 KIAA0586Q9BVV6 1533 aa24.29■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms