RNA–Protein interactions for RNA: ENST00000502948.1

LSM3P4-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated pseudogene 4, humanhuman

BASIC

Gene LSM3P4, Length 309 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P4-201ENST00000502948 NISCHQ9Y2I1 1504 aa15.52■□□□□ 0.07
LSM3P4-201ENST00000502948 CCDC180Q9P1Z9 1646 aa14.03□□□□□ -0.16
LSM3P4-201ENST00000502948 ABCC9O60706 1549 aa13.85□□□□□ -0.19
LSM3P4-201ENST00000502948 RB1CC1Q8TDY2 1594 aa13.31□□□□□ -0.28
LSM3P4-201ENST00000502948 NACADO15069 1562 aa13.24□□□□□ -0.29
LSM3P4-201ENST00000502948 MYO15BQ96JP2 1530 aa13.13□□□□□ -0.31
LSM3P4-201ENST00000502948 UNC13AQ9UPW8 1703 aa13.02□□□□□ -0.33
LSM3P4-201ENST00000502948 DNAJC5BQ9UF47 199 aa13.01□□□□□ -0.33
LSM3P4-201ENST00000502948 DCAF1Q9Y4B6 1507 aa12.93□□□□□ -0.34
LSM3P4-201ENST00000502948 BICRAQ9NZM4 1560 aa12.9□□□□□ -0.35
LSM3P4-201ENST00000502948 DCAF8L2P0C7V8 631 aa12.89□□□□□ -0.35
LSM3P4-201ENST00000502948 ZCCHC6Q5VYS8 1495 aaKnown RBP12.86□□□□□ -0.35
LSM3P4-201ENST00000502948 SHROOM4Q9ULL8 1493 aa12.86□□□□□ -0.35
LSM3P4-201ENST00000502948 PABPN1Q86U42 306 aaKnown RBP eCLIP12.83□□□□□ -0.36
LSM3P4-201ENST00000502948 SCRIBQ14160 1630 aa12.6□□□□□ -0.39
LSM3P4-201ENST00000502948 CC2D2AQ9P2K1 1620 aa12.6□□□□□ -0.39
LSM3P4-201ENST00000502948 EIF4G1Q04637 1599 aaKnown RBP12.58□□□□□ -0.4
LSM3P4-201ENST00000502948 CECR2Q9BXF3 1484 aa12.54□□□□□ -0.4
LSM3P4-201ENST00000502948 NCAPD3P42695 1498 aa12.21□□□□□ -0.45
LSM3P4-201ENST00000502948 HMGXB3Q12766 1538 aa12.13□□□□□ -0.47
LSM3P4-201ENST00000502948 SMARCA2P51531 1590 aa12.13□□□□□ -0.47
LSM3P4-201ENST00000502948 ATAD2BQ9ULI0 1458 aa12.12□□□□□ -0.47
LSM3P4-201ENST00000502948 SMARCA4P51532 1647 aa12.11□□□□□ -0.47
LSM3P4-201ENST00000502948 CUX2O14529 1486 aa12.09□□□□□ -0.47
LSM3P4-201ENST00000502948 PEG3Q9GZU2 1588 aa12.09□□□□□ -0.47
LSM3P4-201ENST00000502948 BAZ1AQ9NRL2 1556 aaPredicted RBP12.07□□□□□ -0.48
LSM3P4-201ENST00000502948 DNAJC5Q9H3Z4 198 aa12.05□□□□□ -0.48
LSM3P4-201ENST00000502948 ERCC6Q03468 1493 aa11.98□□□□□ -0.49
LSM3P4-201ENST00000502948 BAZ1BQ9UIG0 1483 aaKnown RBP11.97□□□□□ -0.49
LSM3P4-201ENST00000502948 LAMC3Q9Y6N6 1575 aa11.95□□□□□ -0.5
LSM3P4-201ENST00000502948 MROH2BQ7Z745 1585 aa11.9□□□□□ -0.5
LSM3P4-201ENST00000502948 NESP48681 1621 aa11.89□□□□□ -0.51
LSM3P4-201ENST00000502948 THOC2Q8NI27 1593 aaKnown RBP11.88□□□□□ -0.51
LSM3P4-201ENST00000502948 PDS5BQ9NTI5 1447 aa11.84□□□□□ -0.51
LSM3P4-201ENST00000502948 KIF21AQ7Z4S6 1674 aa11.81□□□□□ -0.52
LSM3P4-201ENST00000502948 CADPSQ9ULU8 1353 aa11.79□□□□□ -0.52
LSM3P4-201ENST00000502948 WIZO95785 1651 aa11.75□□□□□ -0.53
LSM3P4-201ENST00000502948 WDR62O43379 1518 aa11.73□□□□□ -0.53
LSM3P4-201ENST00000502948 MRC2Q9UBG0 1479 aa11.71□□□□□ -0.53
LSM3P4-201ENST00000502948 CFTRP13569 1480 aa11.68□□□□□ -0.54
LSM3P4-201ENST00000502948 RSF1Q96T23 1441 aaPredicted RBP11.66□□□□□ -0.54
LSM3P4-201ENST00000502948 TOP2AP11388 1531 aaKnown RBP11.65□□□□□ -0.54
LSM3P4-201ENST00000502948 CEP164Q9UPV0 1460 aa11.65□□□□□ -0.54
LSM3P4-201ENST00000502948 PRDM2Q13029 1718 aa11.63□□□□□ -0.55
LSM3P4-201ENST00000502948 FANCD2Q9BXW9 1451 aa11.63□□□□□ -0.55
LSM3P4-201ENST00000502948 URB2Q14146 1524 aaKnown RBP11.53□□□□□ -0.56
LSM3P4-201ENST00000502948 CCDC88BA6NC98 1476 aa11.48□□□□□ -0.57
LSM3P4-201ENST00000502948 ABCC8Q09428 1581 aa11.48□□□□□ -0.57
LSM3P4-201ENST00000502948 OSCARQ8IYS5 282 aa11.46□□□□□ -0.57
LSM3P4-201ENST00000502948 IFT140Q96RY7 1462 aa11.44□□□□□ -0.58
LSM3P4-201ENST00000502948 TOPBP1Q92547 1522 aa11.42□□□□□ -0.58
LSM3P4-201ENST00000502948 DNMBPQ6XZF7 1577 aa11.41□□□□□ -0.58
LSM3P4-201ENST00000502948 TRIM41Q8WV44 630 aa11.36□□□□□ -0.59
LSM3P4-201ENST00000502948 ZNF608Q9ULD9 1512 aaPredicted RBP11.35□□□□□ -0.59
LSM3P4-201ENST00000502948 TARBP1Q13395 1621 aaKnown RBP11.35□□□□□ -0.59
LSM3P4-201ENST00000502948 EIF4G3O43432 1585 aaKnown RBP11.35□□□□□ -0.59
LSM3P4-201ENST00000502948 WDR97A6NE52 1622 aa11.35□□□□□ -0.59
LSM3P4-201ENST00000502948 RIMBP3CA6NJZ7 1639 aa11.32□□□□□ -0.6
LSM3P4-201ENST00000502948 RIMBP3BA6NNM3 1639 aa11.32□□□□□ -0.6
LSM3P4-201ENST00000502948 RIMBP3Q9UFD9 1639 aa11.32□□□□□ -0.6
LSM3P4-201ENST00000502948 POLA1P09884 1462 aaPredicted RBP11.3□□□□□ -0.6
LSM3P4-201ENST00000502948 ARHGEF11O15085 1522 aa11.29□□□□□ -0.6
LSM3P4-201ENST00000502948 CHD1O14646 1710 aa11.27□□□□□ -0.61
LSM3P4-201ENST00000502948 AQRO60306 1485 aaKnown RBP eCLIP11.25□□□□□ -0.61
LSM3P4-201ENST00000502948 SOGA1O94964 1423 aa11.22□□□□□ -0.61
LSM3P4-201ENST00000502948 FGD5Q6ZNL6 1462 aa11.2□□□□□ -0.62
LSM3P4-201ENST00000502948 MAGI1Q96QZ7 1491 aaPredicted RBP11.2□□□□□ -0.62
LSM3P4-201ENST00000502948 CUX1P39880 1505 aa11.19□□□□□ -0.62
LSM3P4-201ENST00000502948 RAD54L2Q9Y4B4 1467 aa11.19□□□□□ -0.62
LSM3P4-201ENST00000502948 CLASP1Q7Z460 1538 aa11.17□□□□□ -0.62
LSM3P4-201ENST00000502948 GRIN2BQ13224 1484 aa11.16□□□□□ -0.62
LSM3P4-201ENST00000502948 SYNJ1O43426 1573 aa11.16□□□□□ -0.62
LSM3P4-201ENST00000502948 TDRD9Q8NDG6 1382 aaKnown RBP11.16□□□□□ -0.62
LSM3P4-201ENST00000502948 ARAP1Q96P48 1450 aa11.15□□□□□ -0.62
LSM3P4-201ENST00000502948 SYNJ2O15056 1496 aa11.14□□□□□ -0.63
LSM3P4-201ENST00000502948 SNAPC4Q5SXM2 1469 aa11.14□□□□□ -0.63
LSM3P4-201ENST00000502948 PBRM1Q86U86 1689 aa11.13□□□□□ -0.63
LSM3P4-201ENST00000502948 ABCA10Q8WWZ4 1543 aa11.13□□□□□ -0.63
LSM3P4-201ENST00000502948 ABCA5Q8WWZ7 1642 aa11.12□□□□□ -0.63
LSM3P4-201ENST00000502948 CYB5RLQ6IPT4 315 aa11.11□□□□□ -0.63
LSM3P4-201ENST00000502948 FBLN2P98095 1184 aa11.1□□□□□ -0.63
LSM3P4-201ENST00000502948 GAPVD1Q14C86 1478 aa11.1□□□□□ -0.63
LSM3P4-201ENST00000502948 CHMP7Q8WUX9 453 aaPredicted RBP11.09□□□□□ -0.63
LSM3P4-201ENST00000502948 BIVM-ERCC5R4GMW8 1640 aa11.08□□□□□ -0.64
LSM3P4-201ENST00000502948 TOP2BQ02880 1626 aa11.06□□□□□ -0.64
LSM3P4-201ENST00000502948 WRNQ14191 1432 aaPredicted RBP eCLIP11.05□□□□□ -0.64
LSM3P4-201ENST00000502948 GRIN2AQ12879 1464 aa11.01□□□□□ -0.65
LSM3P4-201ENST00000502948 ERICH3Q5RHP9 1530 aa11.01□□□□□ -0.65
LSM3P4-201ENST00000502948 ADAMTS12P58397 1594 aa11.01□□□□□ -0.65
LSM3P4-201ENST00000502948 NUP160Q12769 1436 aa11.01□□□□□ -0.65
LSM3P4-201ENST00000502948 SHROOM2Q13796 1616 aa11□□□□□ -0.65
LSM3P4-201ENST00000502948 FHAD1B1AJZ9 1412 aa10.98□□□□□ -0.65
LSM3P4-201ENST00000502948 TRHP20396 242 aaPredicted RBP10.97□□□□□ -0.65
LSM3P4-201ENST00000502948 CEP170Q5SW79 1584 aa10.96□□□□□ -0.65
LSM3P4-201ENST00000502948 SUPT5HO00267 1087 aaKnown RBP10.95□□□□□ -0.66
LSM3P4-201ENST00000502948 ERCC6L2Q5T890 1561 aa10.9□□□□□ -0.67
LSM3P4-201ENST00000502948 RUSC2Q8N2Y8 1516 aa10.87□□□□□ -0.67
LSM3P4-201ENST00000502948 CUL7Q14999 1698 aa10.85□□□□□ -0.67
LSM3P4-201ENST00000502948 KIF13AQ9H1H9 1805 aa10.84□□□□□ -0.67
LSM3P4-201ENST00000502948 PRG4Q92954 1404 aaPredicted RBP10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 147.9 ms