RNA–Protein interactions for RNA: ENST00000502555.5

SGCA-203, Transcript of sarcoglycan alpha, humanhuman

TSL 2

Gene SGCA, Length 1,349 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCA-203ENST00000502555 NISCHQ9Y2I1 1504 aa31.19■■■□□ 2.58
SGCA-203ENST00000502555 CCDC180Q9P1Z9 1646 aa27.35■■□□□ 1.97
SGCA-203ENST00000502555 ZCCHC6Q5VYS8 1495 aaKnown RBP26.18■■□□□ 1.78
SGCA-203ENST00000502555 ABCC9O60706 1549 aa25.97■■□□□ 1.75
SGCA-203ENST00000502555 DCAF1Q9Y4B6 1507 aa25.87■■□□□ 1.73
SGCA-203ENST00000502555 MYO15BQ96JP2 1530 aa25.69■■□□□ 1.7
SGCA-203ENST00000502555 DCAF8L2P0C7V8 631 aa25.67■■□□□ 1.7
SGCA-203ENST00000502555 NACADO15069 1562 aa25.54■■□□□ 1.68
SGCA-203ENST00000502555 RB1CC1Q8TDY2 1594 aa25.36■■□□□ 1.65
SGCA-203ENST00000502555 SHROOM4Q9ULL8 1493 aa25.11■■□□□ 1.61
SGCA-203ENST00000502555 SCRIBQ14160 1630 aa25.01■■□□□ 1.59
SGCA-203ENST00000502555 UNC13AQ9UPW8 1703 aa24.69■■□□□ 1.54
SGCA-203ENST00000502555 BICRAQ9NZM4 1560 aa24.55■■□□□ 1.52
SGCA-203ENST00000502555 PABPN1Q86U42 306 aaKnown RBP eCLIP24.39■■□□□ 1.5
SGCA-203ENST00000502555 CECR2Q9BXF3 1484 aa24.19■■□□□ 1.46
SGCA-203ENST00000502555 BAZ1AQ9NRL2 1556 aaPredicted RBP24.12■■□□□ 1.45
SGCA-203ENST00000502555 RSF1Q96T23 1441 aaPredicted RBP24.08■■□□□ 1.45
SGCA-203ENST00000502555 SUPT5HO00267 1087 aaKnown RBP24.05■■□□□ 1.44
SGCA-203ENST00000502555 MROH2BQ7Z745 1585 aa24.04■■□□□ 1.44
SGCA-203ENST00000502555 SMARCA4P51532 1647 aa24.01■■□□□ 1.43
SGCA-203ENST00000502555 EIF4G1Q04637 1599 aaKnown RBP23.84■■□□□ 1.41
SGCA-203ENST00000502555 PEG3Q9GZU2 1588 aa23.79■■□□□ 1.4
SGCA-203ENST00000502555 WIZO95785 1651 aa23.78■■□□□ 1.4
SGCA-203ENST00000502555 SMARCA2P51531 1590 aa23.71■■□□□ 1.39
SGCA-203ENST00000502555 ATAD2BQ9ULI0 1458 aa23.7■■□□□ 1.38
SGCA-203ENST00000502555 TOP2AP11388 1531 aaKnown RBP23.64■■□□□ 1.38
SGCA-203ENST00000502555 NCAPD3P42695 1498 aa23.56■■□□□ 1.36
SGCA-203ENST00000502555 BAZ1BQ9UIG0 1483 aaKnown RBP23.55■■□□□ 1.36
SGCA-203ENST00000502555 HMGXB3Q12766 1538 aa23.53■■□□□ 1.36
SGCA-203ENST00000502555 CC2D2AQ9P2K1 1620 aa23.52■■□□□ 1.36
SGCA-203ENST00000502555 CCDC88BA6NC98 1476 aa23.34■■□□□ 1.33
SGCA-203ENST00000502555 DNAJC5BQ9UF47 199 aa23.06■■□□□ 1.28
SGCA-203ENST00000502555 CFTRP13569 1480 aa22.97■■□□□ 1.27
SGCA-203ENST00000502555 CHIC1Q5VXU3 224 aa22.94■■□□□ 1.26
SGCA-203ENST00000502555 CADPSQ9ULU8 1353 aa22.92■■□□□ 1.26
SGCA-203ENST00000502555 LAMC3Q9Y6N6 1575 aa22.79■■□□□ 1.24
SGCA-203ENST00000502555 PRDM2Q13029 1718 aa22.77■■□□□ 1.24
SGCA-203ENST00000502555 ABCC8Q09428 1581 aa22.71■■□□□ 1.23
SGCA-203ENST00000502555 NESP48681 1621 aa22.7■■□□□ 1.22
SGCA-203ENST00000502555 TRIM41Q8WV44 630 aa22.7■■□□□ 1.22
SGCA-203ENST00000502555 WRNQ14191 1432 aaPredicted RBP eCLIP22.69■■□□□ 1.22
SGCA-203ENST00000502555 FANCD2Q9BXW9 1451 aa22.65■■□□□ 1.22
SGCA-203ENST00000502555 PDS5BQ9NTI5 1447 aa22.64■■□□□ 1.21
SGCA-203ENST00000502555 SYNJ1O43426 1573 aa22.56■■□□□ 1.2
SGCA-203ENST00000502555 CEP164Q9UPV0 1460 aa22.56■■□□□ 1.2
SGCA-203ENST00000502555 TOP2BQ02880 1626 aa22.53■■□□□ 1.2
SGCA-203ENST00000502555 BIVM-ERCC5R4GMW8 1640 aa22.51■■□□□ 1.19
SGCA-203ENST00000502555 CUX1P39880 1505 aa22.51■■□□□ 1.19
SGCA-203ENST00000502555 KIF21AQ7Z4S6 1674 aa22.43■■□□□ 1.18
SGCA-203ENST00000502555 DNMBPQ6XZF7 1577 aa22.43■■□□□ 1.18
SGCA-203ENST00000502555 TOPBP1Q92547 1522 aa22.38■■□□□ 1.17
SGCA-203ENST00000502555 URB2Q14146 1524 aaKnown RBP22.37■■□□□ 1.17
SGCA-203ENST00000502555 MRC2Q9UBG0 1479 aa22.35■■□□□ 1.17
SGCA-203ENST00000502555 ERCC6Q03468 1493 aa22.34■■□□□ 1.17
SGCA-203ENST00000502555 FGD5Q6ZNL6 1462 aa22.31■■□□□ 1.16
SGCA-203ENST00000502555 EEA1Q15075 1411 aa22.31■■□□□ 1.16
SGCA-203ENST00000502555 SOGA1O94964 1423 aa22.26■■□□□ 1.15
SGCA-203ENST00000502555 POLA1P09884 1462 aaPredicted RBP22.25■■□□□ 1.15
SGCA-203ENST00000502555 WDR62O43379 1518 aa22.24■■□□□ 1.15
SGCA-203ENST00000502555 THOC2Q8NI27 1593 aaKnown RBP22.2■■□□□ 1.14
SGCA-203ENST00000502555 FAM9AQ8IZU1 332 aaPredicted RBP22.18■■□□□ 1.14
SGCA-203ENST00000502555 KIF27Q86VH2 1401 aa22.16■■□□□ 1.14
SGCA-203ENST00000502555 RUSC2Q8N2Y8 1516 aa22.15■■□□□ 1.14
SGCA-203ENST00000502555 ABCA10Q8WWZ4 1543 aa22.15■■□□□ 1.14
SGCA-203ENST00000502555 CUX2O14529 1486 aa22.12■■□□□ 1.13
SGCA-203ENST00000502555 RAD54L2Q9Y4B4 1467 aa22.12■■□□□ 1.13
SGCA-203ENST00000502555 CSRNP3Q8WYN3 585 aa22.1■■□□□ 1.13
SGCA-203ENST00000502555 WDR97A6NE52 1622 aa22.06■■□□□ 1.12
SGCA-203ENST00000502555 TARBP1Q13395 1621 aaKnown RBP22.05■■□□□ 1.12
SGCA-203ENST00000502555 IFT140Q96RY7 1462 aa22.05■■□□□ 1.12
SGCA-203ENST00000502555 KIF21BO75037 1637 aa21.97■■□□□ 1.11
SGCA-203ENST00000502555 ABCA5Q8WWZ7 1642 aa21.97■■□□□ 1.11
SGCA-203ENST00000502555 LOC105371045A0A1W2PR82 267 aa21.97■■□□□ 1.11
SGCA-203ENST00000502555 PRXQ9BXM0 1461 aa21.94■■□□□ 1.1
SGCA-203ENST00000502555 IGF1RP08069 1367 aa21.94■■□□□ 1.1
SGCA-203ENST00000502555 GOLGA3Q08378 1498 aa21.93■■□□□ 1.1
SGCA-203ENST00000502555 TDRD9Q8NDG6 1382 aaKnown RBP21.93■■□□□ 1.1
SGCA-203ENST00000502555 GAPVD1Q14C86 1478 aa21.93■■□□□ 1.1
SGCA-203ENST00000502555 ERICH3Q5RHP9 1530 aa21.9■■□□□ 1.1
SGCA-203ENST00000502555 ZNF608Q9ULD9 1512 aaPredicted RBP21.85■■□□□ 1.09
SGCA-203ENST00000502555 RAPGEF2Q9Y4G8 1499 aa21.84■■□□□ 1.09
SGCA-203ENST00000502555 CUL7Q14999 1698 aa21.84■■□□□ 1.09
SGCA-203ENST00000502555 CARMIL1Q5VZK9 1371 aa21.83■■□□□ 1.09
SGCA-203ENST00000502555 AQRO60306 1485 aaKnown RBP eCLIP21.83■■□□□ 1.08
SGCA-203ENST00000502555 GRIN2BQ13224 1484 aa21.83■■□□□ 1.08
SGCA-203ENST00000502555 TNIKQ9UKE5 1360 aa21.81■■□□□ 1.08
SGCA-203ENST00000502555 EIF4G3O43432 1585 aaKnown RBP21.8■■□□□ 1.08
SGCA-203ENST00000502555 EHMT2Q96KQ7 1210 aa21.8■■□□□ 1.08
SGCA-203ENST00000502555 PBRM1Q86U86 1689 aa21.78■■□□□ 1.08
SGCA-203ENST00000502555 UBTFP17480 764 aaKnown RBP21.76■■□□□ 1.07
SGCA-203ENST00000502555 FHAD1B1AJZ9 1412 aa21.72■■□□□ 1.07
SGCA-203ENST00000502555 ADAMTS12P58397 1594 aa21.71■■□□□ 1.07
SGCA-203ENST00000502555 MAGI1Q96QZ7 1491 aaPredicted RBP21.68■■□□□ 1.06
SGCA-203ENST00000502555 SNAPC4Q5SXM2 1469 aa21.68■■□□□ 1.06
SGCA-203ENST00000502555 CEP162Q5TB80 1403 aa21.64■■□□□ 1.06
SGCA-203ENST00000502555 SYNJ2O15056 1496 aa21.58■■□□□ 1.05
SGCA-203ENST00000502555 GRIN2AQ12879 1464 aa21.54■■□□□ 1.04
SGCA-203ENST00000502555 CLIP1P30622 1438 aa21.54■■□□□ 1.04
SGCA-203ENST00000502555 CTTNBP2Q8WZ74 1663 aa21.5■■□□□ 1.03
SGCA-203ENST00000502555 CHMP7Q8WUX9 453 aaPredicted RBP21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms