RNA–Protein interactions for RNA: ENST00000502279.2

CHFR-207, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 4

Gene CHFR, Length 1,423 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-207ENST00000502279 NISCHQ9Y2I1 1504 aa32.95■■■□□ 2.87
CHFR-207ENST00000502279 CCDC180Q9P1Z9 1646 aa29.39■■■□□ 2.29
CHFR-207ENST00000502279 ABCC9O60706 1549 aa28.28■■■□□ 2.12
CHFR-207ENST00000502279 ZCCHC6Q5VYS8 1495 aaKnown RBP27.54■■■□□ 2
CHFR-207ENST00000502279 NACADO15069 1562 aa27.46■■□□□ 1.99
CHFR-207ENST00000502279 RB1CC1Q8TDY2 1594 aa27.44■■□□□ 1.98
CHFR-207ENST00000502279 MYO15BQ96JP2 1530 aa27.39■■□□□ 1.98
CHFR-207ENST00000502279 DCAF1Q9Y4B6 1507 aa27.36■■□□□ 1.97
CHFR-207ENST00000502279 DCAF8L2P0C7V8 631 aa27.15■■□□□ 1.94
CHFR-207ENST00000502279 UNC13AQ9UPW8 1703 aa26.96■■□□□ 1.91
CHFR-207ENST00000502279 SCRIBQ14160 1630 aa26.68■■□□□ 1.86
CHFR-207ENST00000502279 BICRAQ9NZM4 1560 aa26.6■■□□□ 1.85
CHFR-207ENST00000502279 SHROOM4Q9ULL8 1493 aa26.4■■□□□ 1.82
CHFR-207ENST00000502279 PABPN1Q86U42 306 aaKnown RBP eCLIP26.32■■□□□ 1.8
CHFR-207ENST00000502279 EIF4G1Q04637 1599 aaKnown RBP25.87■■□□□ 1.73
CHFR-207ENST00000502279 CC2D2AQ9P2K1 1620 aa25.7■■□□□ 1.7
CHFR-207ENST00000502279 DNAJC5BQ9UF47 199 aa25.63■■□□□ 1.69
CHFR-207ENST00000502279 SMARCA4P51532 1647 aa25.6■■□□□ 1.69
CHFR-207ENST00000502279 CECR2Q9BXF3 1484 aa25.58■■□□□ 1.68
CHFR-207ENST00000502279 BAZ1AQ9NRL2 1556 aaPredicted RBP25.57■■□□□ 1.68
CHFR-207ENST00000502279 MROH2BQ7Z745 1585 aa25.37■■□□□ 1.65
CHFR-207ENST00000502279 PEG3Q9GZU2 1588 aa25.37■■□□□ 1.65
CHFR-207ENST00000502279 SMARCA2P51531 1590 aa25.36■■□□□ 1.65
CHFR-207ENST00000502279 ATAD2BQ9ULI0 1458 aa25.3■■□□□ 1.64
CHFR-207ENST00000502279 HMGXB3Q12766 1538 aa25.26■■□□□ 1.63
CHFR-207ENST00000502279 NCAPD3P42695 1498 aa25.25■■□□□ 1.63
CHFR-207ENST00000502279 WIZO95785 1651 aa25.17■■□□□ 1.62
CHFR-207ENST00000502279 BAZ1BQ9UIG0 1483 aaKnown RBP25.12■■□□□ 1.61
CHFR-207ENST00000502279 RSF1Q96T23 1441 aaPredicted RBP25.11■■□□□ 1.61
CHFR-207ENST00000502279 TOP2AP11388 1531 aaKnown RBP24.93■■□□□ 1.58
CHFR-207ENST00000502279 LAMC3Q9Y6N6 1575 aa24.65■■□□□ 1.54
CHFR-207ENST00000502279 NESP48681 1621 aa24.56■■□□□ 1.52
CHFR-207ENST00000502279 PRDM2Q13029 1718 aa24.54■■□□□ 1.52
CHFR-207ENST00000502279 CCDC88BA6NC98 1476 aa24.53■■□□□ 1.52
CHFR-207ENST00000502279 CADPSQ9ULU8 1353 aa24.48■■□□□ 1.51
CHFR-207ENST00000502279 SUPT5HO00267 1087 aaKnown RBP24.47■■□□□ 1.51
CHFR-207ENST00000502279 CFTRP13569 1480 aa24.45■■□□□ 1.5
CHFR-207ENST00000502279 KIF21AQ7Z4S6 1674 aa24.44■■□□□ 1.5
CHFR-207ENST00000502279 ERCC6Q03468 1493 aa24.38■■□□□ 1.49
CHFR-207ENST00000502279 PDS5BQ9NTI5 1447 aa24.36■■□□□ 1.49
CHFR-207ENST00000502279 THOC2Q8NI27 1593 aaKnown RBP24.29■■□□□ 1.48
CHFR-207ENST00000502279 FANCD2Q9BXW9 1451 aa24.25■■□□□ 1.47
CHFR-207ENST00000502279 CEP164Q9UPV0 1460 aa24.23■■□□□ 1.47
CHFR-207ENST00000502279 MRC2Q9UBG0 1479 aa24.14■■□□□ 1.45
CHFR-207ENST00000502279 WDR62O43379 1518 aa24.12■■□□□ 1.45
CHFR-207ENST00000502279 CUX2O14529 1486 aa24.12■■□□□ 1.45
CHFR-207ENST00000502279 URB2Q14146 1524 aaKnown RBP24.01■■□□□ 1.43
CHFR-207ENST00000502279 DNMBPQ6XZF7 1577 aa23.95■■□□□ 1.43
CHFR-207ENST00000502279 ABCC8Q09428 1581 aa23.93■■□□□ 1.42
CHFR-207ENST00000502279 TOPBP1Q92547 1522 aa23.91■■□□□ 1.42
CHFR-207ENST00000502279 CUX1P39880 1505 aa23.82■■□□□ 1.4
CHFR-207ENST00000502279 BIVM-ERCC5R4GMW8 1640 aa23.78■■□□□ 1.4
CHFR-207ENST00000502279 TOP2BQ02880 1626 aa23.73■■□□□ 1.39
CHFR-207ENST00000502279 POLA1P09884 1462 aaPredicted RBP23.72■■□□□ 1.39
CHFR-207ENST00000502279 TARBP1Q13395 1621 aaKnown RBP23.71■■□□□ 1.39
CHFR-207ENST00000502279 SYNJ1O43426 1573 aa23.71■■□□□ 1.39
CHFR-207ENST00000502279 WRNQ14191 1432 aaPredicted RBP eCLIP23.7■■□□□ 1.38
CHFR-207ENST00000502279 IFT140Q96RY7 1462 aa23.69■■□□□ 1.38
CHFR-207ENST00000502279 FGD5Q6ZNL6 1462 aa23.68■■□□□ 1.38
CHFR-207ENST00000502279 WDR97A6NE52 1622 aa23.66■■□□□ 1.38
CHFR-207ENST00000502279 EIF4G3O43432 1585 aaKnown RBP23.59■■□□□ 1.37
CHFR-207ENST00000502279 SOGA1O94964 1423 aa23.54■■□□□ 1.36
CHFR-207ENST00000502279 RAD54L2Q9Y4B4 1467 aa23.54■■□□□ 1.36
CHFR-207ENST00000502279 ZNF608Q9ULD9 1512 aaPredicted RBP23.53■■□□□ 1.36
CHFR-207ENST00000502279 ABCA10Q8WWZ4 1543 aa23.49■■□□□ 1.35
CHFR-207ENST00000502279 ABCA5Q8WWZ7 1642 aa23.47■■□□□ 1.35
CHFR-207ENST00000502279 PBRM1Q86U86 1689 aa23.44■■□□□ 1.34
CHFR-207ENST00000502279 AQRO60306 1485 aaKnown RBP eCLIP23.38■■□□□ 1.33
CHFR-207ENST00000502279 TDRD9Q8NDG6 1382 aaKnown RBP23.34■■□□□ 1.33
CHFR-207ENST00000502279 GAPVD1Q14C86 1478 aa23.33■■□□□ 1.32
CHFR-207ENST00000502279 GRIN2BQ13224 1484 aa23.3■■□□□ 1.32
CHFR-207ENST00000502279 CHD1O14646 1710 aa23.29■■□□□ 1.32
CHFR-207ENST00000502279 MAGI1Q96QZ7 1491 aaPredicted RBP23.26■■□□□ 1.31
CHFR-207ENST00000502279 ERICH3Q5RHP9 1530 aa23.24■■□□□ 1.31
CHFR-207ENST00000502279 SNAPC4Q5SXM2 1469 aa23.24■■□□□ 1.31
CHFR-207ENST00000502279 ADAMTS12P58397 1594 aa23.21■■□□□ 1.31
CHFR-207ENST00000502279 KIF27Q86VH2 1401 aa23.18■■□□□ 1.3
CHFR-207ENST00000502279 CUL7Q14999 1698 aa23.14■■□□□ 1.3
CHFR-207ENST00000502279 SYNJ2O15056 1496 aa23.14■■□□□ 1.29
CHFR-207ENST00000502279 TRIM41Q8WV44 630 aa23.14■■□□□ 1.29
CHFR-207ENST00000502279 AEBP2Q6ZN18 517 aaPredicted RBP23.08■■□□□ 1.28
CHFR-207ENST00000502279 FHAD1B1AJZ9 1412 aa23.06■■□□□ 1.28
CHFR-207ENST00000502279 GRIN2AQ12879 1464 aa23.02■■□□□ 1.28
CHFR-207ENST00000502279 CHIC1Q5VXU3 224 aa22.99■■□□□ 1.27
CHFR-207ENST00000502279 IGF1RP08069 1367 aa22.99■■□□□ 1.27
CHFR-207ENST00000502279 RUSC2Q8N2Y8 1516 aa22.99■■□□□ 1.27
CHFR-207ENST00000502279 CLASP1Q7Z460 1538 aa22.97■■□□□ 1.27
CHFR-207ENST00000502279 OSCARQ8IYS5 282 aa22.97■■□□□ 1.27
CHFR-207ENST00000502279 CHMP7Q8WUX9 453 aaPredicted RBP22.96■■□□□ 1.27
CHFR-207ENST00000502279 FBLN2P98095 1184 aa22.95■■□□□ 1.26
CHFR-207ENST00000502279 DNAJC5Q9H3Z4 198 aa22.94■■□□□ 1.26
CHFR-207ENST00000502279 CEP170Q5SW79 1584 aa22.94■■□□□ 1.26
CHFR-207ENST00000502279 EEA1Q15075 1411 aa22.92■■□□□ 1.26
CHFR-207ENST00000502279 NUP160Q12769 1436 aa22.91■■□□□ 1.26
CHFR-207ENST00000502279 CARMIL1Q5VZK9 1371 aa22.87■■□□□ 1.25
CHFR-207ENST00000502279 RAPGEF2Q9Y4G8 1499 aa22.82■■□□□ 1.24
CHFR-207ENST00000502279 SHROOM2Q13796 1616 aa22.82■■□□□ 1.24
CHFR-207ENST00000502279 PRXQ9BXM0 1461 aa22.81■■□□□ 1.24
CHFR-207ENST00000502279 CTTNBP2Q8WZ74 1663 aa22.8■■□□□ 1.24
CHFR-207ENST00000502279 RIMBP3CA6NJZ7 1639 aa22.78■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms