RNA–Protein interactions for RNA: ENST00000499045.2

CHFR-206, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 2

Gene CHFR, Length 505 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-206ENST00000499045 NISCHQ9Y2I1 1504 aa61.71■■■■■ 7.47
CHFR-206ENST00000499045 CCDC180Q9P1Z9 1646 aa54.89■■■■■ 6.38
CHFR-206ENST00000499045 ABCC9O60706 1549 aa53.76■■■■■ 6.2
CHFR-206ENST00000499045 RB1CC1Q8TDY2 1594 aa51.69■■■■■ 5.86
CHFR-206ENST00000499045 NACADO15069 1562 aa51.64■■■■■ 5.86
CHFR-206ENST00000499045 DCAF8L2P0C7V8 631 aa51.47■■■■■ 5.83
CHFR-206ENST00000499045 ZCCHC6Q5VYS8 1495 aaKnown RBP51.4■■■■■ 5.82
CHFR-206ENST00000499045 MYO15BQ96JP2 1530 aa51.34■■■■■ 5.81
CHFR-206ENST00000499045 DCAF1Q9Y4B6 1507 aa51.09■■■■■ 5.77
CHFR-206ENST00000499045 UNC13AQ9UPW8 1703 aa50.56■■■■■ 5.68
CHFR-206ENST00000499045 PABPN1Q86U42 306 aaKnown RBP eCLIP50.22■■■■■ 5.63
CHFR-206ENST00000499045 BICRAQ9NZM4 1560 aa50.19■■■■■ 5.63
CHFR-206ENST00000499045 SCRIBQ14160 1630 aa50.03■■■■■ 5.6
CHFR-206ENST00000499045 SHROOM4Q9ULL8 1493 aa49.63■■■■■ 5.54
CHFR-206ENST00000499045 DNAJC5BQ9UF47 199 aa49.48■■■■■ 5.51
CHFR-206ENST00000499045 EIF4G1Q04637 1599 aaKnown RBP48.83■■■■■ 5.41
CHFR-206ENST00000499045 CC2D2AQ9P2K1 1620 aa48.65■■■■■ 5.38
CHFR-206ENST00000499045 CECR2Q9BXF3 1484 aa48.33■■■■■ 5.33
CHFR-206ENST00000499045 SMARCA4P51532 1647 aa47.89■■■■■ 5.26
CHFR-206ENST00000499045 BAZ1AQ9NRL2 1556 aaPredicted RBP47.82■■■■■ 5.25
CHFR-206ENST00000499045 NCAPD3P42695 1498 aa47.67■■■■■ 5.22
CHFR-206ENST00000499045 ATAD2BQ9ULI0 1458 aa47.67■■■■■ 5.22
CHFR-206ENST00000499045 SMARCA2P51531 1590 aa47.58■■■■■ 5.21
CHFR-206ENST00000499045 MROH2BQ7Z745 1585 aa47.56■■■■■ 5.2
CHFR-206ENST00000499045 PEG3Q9GZU2 1588 aa47.47■■■■■ 5.19
CHFR-206ENST00000499045 HMGXB3Q12766 1538 aa47.41■■■■■ 5.18
CHFR-206ENST00000499045 BAZ1BQ9UIG0 1483 aaKnown RBP47.23■■■■■ 5.15
CHFR-206ENST00000499045 WIZO95785 1651 aa47.03■■■■■ 5.12
CHFR-206ENST00000499045 RSF1Q96T23 1441 aaPredicted RBP46.98■■■■■ 5.11
CHFR-206ENST00000499045 TOP2AP11388 1531 aaKnown RBP46.53■■■■■ 5.04
CHFR-206ENST00000499045 NESP48681 1621 aa46.52■■■■■ 5.04
CHFR-206ENST00000499045 LAMC3Q9Y6N6 1575 aa46.39■■■■■ 5.02
CHFR-206ENST00000499045 ERCC6Q03468 1493 aa46.31■■■■■ 5
CHFR-206ENST00000499045 CADPSQ9ULU8 1353 aa46.25■■■■■ 4.99
CHFR-206ENST00000499045 PDS5BQ9NTI5 1447 aa46.06■■■■■ 4.96
CHFR-206ENST00000499045 CCDC88BA6NC98 1476 aa45.99■■■■■ 4.95
CHFR-206ENST00000499045 CFTRP13569 1480 aa45.98■■■■■ 4.95
CHFR-206ENST00000499045 KIF21AQ7Z4S6 1674 aa45.95■■■■■ 4.95
CHFR-206ENST00000499045 CUX2O14529 1486 aa45.91■■■■■ 4.94
CHFR-206ENST00000499045 THOC2Q8NI27 1593 aaKnown RBP45.85■■■■■ 4.93
CHFR-206ENST00000499045 FANCD2Q9BXW9 1451 aa45.71■■■■■ 4.91
CHFR-206ENST00000499045 CEP164Q9UPV0 1460 aa45.64■■■■■ 4.9
CHFR-206ENST00000499045 SUPT5HO00267 1087 aaKnown RBP45.63■■■■■ 4.9
CHFR-206ENST00000499045 MRC2Q9UBG0 1479 aa45.61■■■■■ 4.89
CHFR-206ENST00000499045 PRDM2Q13029 1718 aa45.6■■■■■ 4.89
CHFR-206ENST00000499045 WDR62O43379 1518 aa45.49■■■■■ 4.87
CHFR-206ENST00000499045 URB2Q14146 1524 aaKnown RBP45.28■■■■■ 4.84
CHFR-206ENST00000499045 TOPBP1Q92547 1522 aa44.98■■■■■ 4.79
CHFR-206ENST00000499045 ABCC8Q09428 1581 aa44.95■■■■■ 4.79
CHFR-206ENST00000499045 DNMBPQ6XZF7 1577 aa44.91■■■■■ 4.78
CHFR-206ENST00000499045 IFT140Q96RY7 1462 aa44.71■■■■■ 4.75
CHFR-206ENST00000499045 DNAJC5Q9H3Z4 198 aa44.62■■■■■ 4.73
CHFR-206ENST00000499045 CUX1P39880 1505 aa44.61■■■■■ 4.73
CHFR-206ENST00000499045 POLA1P09884 1462 aaPredicted RBP44.59■■■■■ 4.73
CHFR-206ENST00000499045 ZNF608Q9ULD9 1512 aaPredicted RBP44.53■■■■■ 4.72
CHFR-206ENST00000499045 TARBP1Q13395 1621 aaKnown RBP44.52■■■■■ 4.72
CHFR-206ENST00000499045 FGD5Q6ZNL6 1462 aa44.46■■■■■ 4.71
CHFR-206ENST00000499045 SOGA1O94964 1423 aa44.39■■■■■ 4.7
CHFR-206ENST00000499045 RAD54L2Q9Y4B4 1467 aa44.39■■■■■ 4.7
CHFR-206ENST00000499045 EIF4G3O43432 1585 aaKnown RBP44.33■■■■■ 4.69
CHFR-206ENST00000499045 WRNQ14191 1432 aaPredicted RBP eCLIP44.27■■■■■ 4.68
CHFR-206ENST00000499045 AQRO60306 1485 aaKnown RBP eCLIP44.25■■■■■ 4.67
CHFR-206ENST00000499045 TOP2BQ02880 1626 aa44.21■■■■■ 4.67
CHFR-206ENST00000499045 BIVM-ERCC5R4GMW8 1640 aa44.21■■■■■ 4.67
CHFR-206ENST00000499045 SYNJ1O43426 1573 aa44.19■■■■■ 4.66
CHFR-206ENST00000499045 TDRD9Q8NDG6 1382 aaKnown RBP44.15■■■■■ 4.66
CHFR-206ENST00000499045 WDR97A6NE52 1622 aa44.14■■■■■ 4.66
CHFR-206ENST00000499045 ABCA10Q8WWZ4 1543 aa44.04■■■■■ 4.64
CHFR-206ENST00000499045 OSCARQ8IYS5 282 aa43.96■■■■■ 4.63
CHFR-206ENST00000499045 GRIN2BQ13224 1484 aa43.89■■■■■ 4.62
CHFR-206ENST00000499045 ABCA5Q8WWZ7 1642 aa43.88■■■■■ 4.62
CHFR-206ENST00000499045 GAPVD1Q14C86 1478 aa43.87■■■■■ 4.61
CHFR-206ENST00000499045 SNAPC4Q5SXM2 1469 aa43.83■■■■■ 4.61
CHFR-206ENST00000499045 CHD1O14646 1710 aa43.79■■■■■ 4.6
CHFR-206ENST00000499045 PBRM1Q86U86 1689 aa43.78■■■■■ 4.6
CHFR-206ENST00000499045 MAGI1Q96QZ7 1491 aaPredicted RBP43.78■■■■■ 4.6
CHFR-206ENST00000499045 FBLN2P98095 1184 aa43.66■■■■■ 4.58
CHFR-206ENST00000499045 SYNJ2O15056 1496 aa43.62■■■■■ 4.57
CHFR-206ENST00000499045 CHMP7Q8WUX9 453 aaPredicted RBP43.56■■■■■ 4.56
CHFR-206ENST00000499045 ERICH3Q5RHP9 1530 aa43.51■■■■■ 4.56
CHFR-206ENST00000499045 ADAMTS12P58397 1594 aa43.46■■■■■ 4.55
CHFR-206ENST00000499045 FHAD1B1AJZ9 1412 aa43.37■■■■■ 4.53
CHFR-206ENST00000499045 CLASP1Q7Z460 1538 aa43.35■■■■■ 4.53
CHFR-206ENST00000499045 KIF27Q86VH2 1401 aa43.34■■■■■ 4.53
CHFR-206ENST00000499045 GRIN2AQ12879 1464 aa43.33■■■■■ 4.53
CHFR-206ENST00000499045 RIMBP3CA6NJZ7 1639 aa43.29■■■■■ 4.52
CHFR-206ENST00000499045 RIMBP3BA6NNM3 1639 aa43.29■■■■■ 4.52
CHFR-206ENST00000499045 RIMBP3Q9UFD9 1639 aa43.29■■■■■ 4.52
CHFR-206ENST00000499045 ARHGEF11O15085 1522 aa43.28■■■■■ 4.52
CHFR-206ENST00000499045 IGF1RP08069 1367 aa43.22■■■■■ 4.51
CHFR-206ENST00000499045 NUP160Q12769 1436 aa43.17■■■■■ 4.5
CHFR-206ENST00000499045 CEP170Q5SW79 1584 aa43.13■■■■■ 4.5
CHFR-206ENST00000499045 TRIM41Q8WV44 630 aa43.11■■■■■ 4.49
CHFR-206ENST00000499045 CUL7Q14999 1698 aa43.08■■■■■ 4.49
CHFR-206ENST00000499045 RUSC2Q8N2Y8 1516 aa42.97■■■■■ 4.47
CHFR-206ENST00000499045 ARAP1Q96P48 1450 aa42.94■■■■■ 4.46
CHFR-206ENST00000499045 CARMIL1Q5VZK9 1371 aa42.93■■■■■ 4.46
CHFR-206ENST00000499045 SHROOM2Q13796 1616 aa42.86■■■■■ 4.45
CHFR-206ENST00000499045 CYB5RLQ6IPT4 315 aa42.84■■■■■ 4.45
CHFR-206ENST00000499045 ERCC6L2Q5T890 1561 aa42.73■■■■■ 4.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms