RNA–Protein interactions for RNA: ENST00000499006.6

LINC01550-201, Transcript of long intergenic non-protein coding RNA 1550, humanhuman

TSL 1 (best)

Gene LINC01550, Length 1,458 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01550-201ENST00000499006 NISCHQ9Y2I1 1504 aa46.28■■■■■ 5
LINC01550-201ENST00000499006 CCDC180Q9P1Z9 1646 aa40.88■■■■■ 4.13
LINC01550-201ENST00000499006 ABCC9O60706 1549 aa39.17■■■■□ 3.86
LINC01550-201ENST00000499006 ZCCHC6Q5VYS8 1495 aaKnown RBP38.72■■■■□ 3.79
LINC01550-201ENST00000499006 DCAF1Q9Y4B6 1507 aa38.35■■■■□ 3.73
LINC01550-201ENST00000499006 DCAF8L2P0C7V8 631 aa38.23■■■■□ 3.71
LINC01550-201ENST00000499006 MYO15BQ96JP2 1530 aa38.23■■■■□ 3.71
LINC01550-201ENST00000499006 NACADO15069 1562 aa38.2■■■■□ 3.71
LINC01550-201ENST00000499006 RB1CC1Q8TDY2 1594 aa38.05■■■■□ 3.68
LINC01550-201ENST00000499006 UNC13AQ9UPW8 1703 aa37.37■■■■□ 3.57
LINC01550-201ENST00000499006 SCRIBQ14160 1630 aa37.31■■■■□ 3.56
LINC01550-201ENST00000499006 SHROOM4Q9ULL8 1493 aa36.94■■■■□ 3.5
LINC01550-201ENST00000499006 BICRAQ9NZM4 1560 aa36.93■■■■□ 3.5
LINC01550-201ENST00000499006 PABPN1Q86U42 306 aaKnown RBP eCLIP36.69■■■■□ 3.46
LINC01550-201ENST00000499006 CECR2Q9BXF3 1484 aa35.96■■■■□ 3.35
LINC01550-201ENST00000499006 EIF4G1Q04637 1599 aaKnown RBP35.86■■■■□ 3.33
LINC01550-201ENST00000499006 BAZ1AQ9NRL2 1556 aaPredicted RBP35.81■■■■□ 3.32
LINC01550-201ENST00000499006 SMARCA4P51532 1647 aa35.78■■■■□ 3.32
LINC01550-201ENST00000499006 MROH2BQ7Z745 1585 aa35.69■■■■□ 3.3
LINC01550-201ENST00000499006 CC2D2AQ9P2K1 1620 aa35.54■■■■□ 3.28
LINC01550-201ENST00000499006 RSF1Q96T23 1441 aaPredicted RBP35.53■■■■□ 3.28
LINC01550-201ENST00000499006 PEG3Q9GZU2 1588 aa35.44■■■■□ 3.26
LINC01550-201ENST00000499006 WIZO95785 1651 aa35.39■■■■□ 3.26
LINC01550-201ENST00000499006 ATAD2BQ9ULI0 1458 aa35.36■■■■□ 3.25
LINC01550-201ENST00000499006 SMARCA2P51531 1590 aa35.35■■■■□ 3.25
LINC01550-201ENST00000499006 DNAJC5BQ9UF47 199 aa35.29■■■■□ 3.24
LINC01550-201ENST00000499006 NCAPD3P42695 1498 aa35.22■■■■□ 3.23
LINC01550-201ENST00000499006 HMGXB3Q12766 1538 aa35.14■■■■□ 3.22
LINC01550-201ENST00000499006 SUPT5HO00267 1087 aaKnown RBP35.11■■■■□ 3.21
LINC01550-201ENST00000499006 BAZ1BQ9UIG0 1483 aaKnown RBP35.08■■■■□ 3.21
LINC01550-201ENST00000499006 TOP2AP11388 1531 aaKnown RBP35.01■■■■□ 3.19
LINC01550-201ENST00000499006 CCDC88BA6NC98 1476 aa34.58■■■■□ 3.13
LINC01550-201ENST00000499006 CADPSQ9ULU8 1353 aa34.2■■■■□ 3.07
LINC01550-201ENST00000499006 LAMC3Q9Y6N6 1575 aa34.2■■■■□ 3.06
LINC01550-201ENST00000499006 CFTRP13569 1480 aa34.19■■■■□ 3.06
LINC01550-201ENST00000499006 PRDM2Q13029 1718 aa34.15■■■■□ 3.06
LINC01550-201ENST00000499006 NESP48681 1621 aa34.15■■■■□ 3.06
LINC01550-201ENST00000499006 PDS5BQ9NTI5 1447 aa33.88■■■■□ 3.01
LINC01550-201ENST00000499006 KIF21AQ7Z4S6 1674 aa33.85■■■■□ 3.01
LINC01550-201ENST00000499006 FANCD2Q9BXW9 1451 aa33.83■■■■□ 3.01
LINC01550-201ENST00000499006 CEP164Q9UPV0 1460 aa33.71■■■□□ 2.99
LINC01550-201ENST00000499006 ERCC6Q03468 1493 aa33.67■■■□□ 2.98
LINC01550-201ENST00000499006 ABCC8Q09428 1581 aa33.57■■■□□ 2.97
LINC01550-201ENST00000499006 THOC2Q8NI27 1593 aaKnown RBP33.53■■■□□ 2.96
LINC01550-201ENST00000499006 MRC2Q9UBG0 1479 aa33.5■■■□□ 2.95
LINC01550-201ENST00000499006 URB2Q14146 1524 aaKnown RBP33.47■■■□□ 2.95
LINC01550-201ENST00000499006 WRNQ14191 1432 aaPredicted RBP eCLIP33.45■■■□□ 2.95
LINC01550-201ENST00000499006 CUX1P39880 1505 aa33.44■■■□□ 2.94
LINC01550-201ENST00000499006 DNMBPQ6XZF7 1577 aa33.43■■■□□ 2.94
LINC01550-201ENST00000499006 WDR62O43379 1518 aa33.41■■■□□ 2.94
LINC01550-201ENST00000499006 SYNJ1O43426 1573 aa33.4■■■□□ 2.94
LINC01550-201ENST00000499006 TOPBP1Q92547 1522 aa33.4■■■□□ 2.94
LINC01550-201ENST00000499006 BIVM-ERCC5R4GMW8 1640 aa33.39■■■□□ 2.94
LINC01550-201ENST00000499006 TOP2BQ02880 1626 aa33.37■■■□□ 2.93
LINC01550-201ENST00000499006 CHIC1Q5VXU3 224 aa33.25■■■□□ 2.91
LINC01550-201ENST00000499006 FGD5Q6ZNL6 1462 aa33.18■■■□□ 2.9
LINC01550-201ENST00000499006 POLA1P09884 1462 aaPredicted RBP33.15■■■□□ 2.9
LINC01550-201ENST00000499006 TRIM41Q8WV44 630 aa33.13■■■□□ 2.89
LINC01550-201ENST00000499006 CUX2O14529 1486 aa33.09■■■□□ 2.89
LINC01550-201ENST00000499006 TARBP1Q13395 1621 aaKnown RBP33.02■■■□□ 2.88
LINC01550-201ENST00000499006 SOGA1O94964 1423 aa32.99■■■□□ 2.87
LINC01550-201ENST00000499006 RAD54L2Q9Y4B4 1467 aa32.99■■■□□ 2.87
LINC01550-201ENST00000499006 WDR97A6NE52 1622 aa32.98■■■□□ 2.87
LINC01550-201ENST00000499006 IFT140Q96RY7 1462 aa32.97■■■□□ 2.87
LINC01550-201ENST00000499006 ABCA10Q8WWZ4 1543 aa32.91■■■□□ 2.86
LINC01550-201ENST00000499006 ZNF608Q9ULD9 1512 aaPredicted RBP32.77■■■□□ 2.84
LINC01550-201ENST00000499006 ABCA5Q8WWZ7 1642 aa32.76■■■□□ 2.83
LINC01550-201ENST00000499006 EIF4G3O43432 1585 aaKnown RBP32.72■■■□□ 2.83
LINC01550-201ENST00000499006 TDRD9Q8NDG6 1382 aaKnown RBP32.7■■■□□ 2.83
LINC01550-201ENST00000499006 KIF27Q86VH2 1401 aa32.68■■■□□ 2.82
LINC01550-201ENST00000499006 RUSC2Q8N2Y8 1516 aa32.67■■■□□ 2.82
LINC01550-201ENST00000499006 AQRO60306 1485 aaKnown RBP eCLIP32.67■■■□□ 2.82
LINC01550-201ENST00000499006 GAPVD1Q14C86 1478 aa32.65■■■□□ 2.82
LINC01550-201ENST00000499006 PBRM1Q86U86 1689 aa32.64■■■□□ 2.82
LINC01550-201ENST00000499006 EEA1Q15075 1411 aa32.57■■■□□ 2.8
LINC01550-201ENST00000499006 ERICH3Q5RHP9 1530 aa32.54■■■□□ 2.8
LINC01550-201ENST00000499006 GRIN2BQ13224 1484 aa32.53■■■□□ 2.8
LINC01550-201ENST00000499006 IGF1RP08069 1367 aa32.48■■■□□ 2.79
LINC01550-201ENST00000499006 CUL7Q14999 1698 aa32.41■■■□□ 2.78
LINC01550-201ENST00000499006 FAM9AQ8IZU1 332 aaPredicted RBP32.41■■■□□ 2.78
LINC01550-201ENST00000499006 SNAPC4Q5SXM2 1469 aa32.39■■■□□ 2.78
LINC01550-201ENST00000499006 MAGI1Q96QZ7 1491 aaPredicted RBP32.38■■■□□ 2.77
LINC01550-201ENST00000499006 CSRNP3Q8WYN3 585 aa32.38■■■□□ 2.77
LINC01550-201ENST00000499006 ADAMTS12P58397 1594 aa32.36■■■□□ 2.77
LINC01550-201ENST00000499006 PRXQ9BXM0 1461 aa32.29■■■□□ 2.76
LINC01550-201ENST00000499006 CARMIL1Q5VZK9 1371 aa32.29■■■□□ 2.76
LINC01550-201ENST00000499006 FHAD1B1AJZ9 1412 aa32.28■■■□□ 2.76
LINC01550-201ENST00000499006 KIF21BO75037 1637 aa32.24■■■□□ 2.75
LINC01550-201ENST00000499006 SYNJ2O15056 1496 aa32.23■■■□□ 2.75
LINC01550-201ENST00000499006 CHD1O14646 1710 aa32.21■■■□□ 2.75
LINC01550-201ENST00000499006 RAPGEF2Q9Y4G8 1499 aa32.2■■■□□ 2.74
LINC01550-201ENST00000499006 GRIN2AQ12879 1464 aa32.14■■■□□ 2.74
LINC01550-201ENST00000499006 CHMP7Q8WUX9 453 aaPredicted RBP32.1■■■□□ 2.73
LINC01550-201ENST00000499006 FBLN2P98095 1184 aa32.05■■■□□ 2.72
LINC01550-201ENST00000499006 GOLGA3Q08378 1498 aa32.05■■■□□ 2.72
LINC01550-201ENST00000499006 CEP170Q5SW79 1584 aa31.98■■■□□ 2.71
LINC01550-201ENST00000499006 NUP160Q12769 1436 aa31.97■■■□□ 2.71
LINC01550-201ENST00000499006 CTTNBP2Q8WZ74 1663 aa31.96■■■□□ 2.71
LINC01550-201ENST00000499006 EHMT2Q96KQ7 1210 aa31.91■■■□□ 2.7
LINC01550-201ENST00000499006 LOC105371045A0A1W2PR82 267 aa31.89■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms