RNA–Protein interactions for RNA: ENST00000498808.5

HDAC6-236, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-236ENST00000498808 NISCHQ9Y2I1 1504 aa40.12■■■■■ 4.01
HDAC6-236ENST00000498808 ABCC9O60706 1549 aa36.8■■■■□ 3.48
HDAC6-236ENST00000498808 CCDC180Q9P1Z9 1646 aa36.24■■■■□ 3.39
HDAC6-236ENST00000498808 DNAJC5BQ9UF47 199 aa35.04■■■■□ 3.2
HDAC6-236ENST00000498808 RB1CC1Q8TDY2 1594 aa34.74■■■■□ 3.15
HDAC6-236ENST00000498808 NACADO15069 1562 aa34.38■■■■□ 3.09
HDAC6-236ENST00000498808 PABPN1Q86U42 306 aaKnown RBP eCLIP34.15■■■■□ 3.061e-7■■■□□ 17.3
HDAC6-236ENST00000498808 DCAF8L2P0C7V8 631 aa34.03■■■■□ 3.04
HDAC6-236ENST00000498808 UNC13AQ9UPW8 1703 aa34.01■■■■□ 3.04
HDAC6-236ENST00000498808 BICRAQ9NZM4 1560 aa33.82■■■■□ 3
HDAC6-236ENST00000498808 MYO15BQ96JP2 1530 aa33.74■■■□□ 2.99
HDAC6-236ENST00000498808 SHROOM4Q9ULL8 1493 aa33.25■■■□□ 2.91
HDAC6-236ENST00000498808 CC2D2AQ9P2K1 1620 aa33.21■■■□□ 2.91
HDAC6-236ENST00000498808 CECR2Q9BXF3 1484 aa33.19■■■□□ 2.9
HDAC6-236ENST00000498808 ZCCHC6Q5VYS8 1495 aaKnown RBP33.15■■■□□ 2.9
HDAC6-236ENST00000498808 DCAF1Q9Y4B6 1507 aa33.1■■■□□ 2.89
HDAC6-236ENST00000498808 EIF4G1Q04637 1599 aaKnown RBP33■■■□□ 2.87
HDAC6-236ENST00000498808 SCRIBQ14160 1630 aa32.99■■■□□ 2.87
HDAC6-236ENST00000498808 DNAJC5Q9H3Z4 198 aa32.53■■■□□ 2.8
HDAC6-236ENST00000498808 CUX2O14529 1486 aa31.92■■■□□ 2.7
HDAC6-236ENST00000498808 ERCC6Q03468 1493 aa31.77■■■□□ 2.68
HDAC6-236ENST00000498808 NCAPD3P42695 1498 aa31.76■■■□□ 2.67
HDAC6-236ENST00000498808 ATAD2BQ9ULI0 1458 aa31.59■■■□□ 2.65
HDAC6-236ENST00000498808 HMGXB3Q12766 1538 aa31.48■■■□□ 2.63
HDAC6-236ENST00000498808 NESP48681 1621 aa31.47■■■□□ 2.63
HDAC6-236ENST00000498808 SMARCA2P51531 1590 aa31.45■■■□□ 2.63
HDAC6-236ENST00000498808 SMARCA4P51532 1647 aa31.42■■■□□ 2.62
HDAC6-236ENST00000498808 THOC2Q8NI27 1593 aaKnown RBP31.26■■■□□ 2.6
HDAC6-236ENST00000498808 BAZ1BQ9UIG0 1483 aaKnown RBP31.23■■■□□ 2.59
HDAC6-236ENST00000498808 BAZ1AQ9NRL2 1556 aaPredicted RBP31.17■■■□□ 2.58
HDAC6-236ENST00000498808 PEG3Q9GZU2 1588 aa31.13■■■□□ 2.57
HDAC6-236ENST00000498808 LAMC3Q9Y6N6 1575 aa31.12■■■□□ 2.57
HDAC6-236ENST00000498808 KIF21AQ7Z4S6 1674 aa31.03■■■□□ 2.56
HDAC6-236ENST00000498808 PDS5BQ9NTI5 1447 aa30.94■■■□□ 2.54
HDAC6-236ENST00000498808 MROH2BQ7Z745 1585 aa30.93■■■□□ 2.54
HDAC6-236ENST00000498808 TRIM41Q8WV44 630 aa30.86■■■□□ 2.53
HDAC6-236ENST00000498808 CADPSQ9ULU8 1353 aa30.76■■■□□ 2.51
HDAC6-236ENST00000498808 MRC2Q9UBG0 1479 aa30.74■■■□□ 2.51
HDAC6-236ENST00000498808 WDR62O43379 1518 aa30.7■■■□□ 2.51
HDAC6-236ENST00000498808 WIZO95785 1651 aa30.52■■■□□ 2.48
HDAC6-236ENST00000498808 CEP164Q9UPV0 1460 aa30.5■■■□□ 2.47
HDAC6-236ENST00000498808 FANCD2Q9BXW9 1451 aa30.42■■■□□ 2.46
HDAC6-236ENST00000498808 OSCARQ8IYS5 282 aa30.33■■■□□ 2.45
HDAC6-236ENST00000498808 CFTRP13569 1480 aa30.31■■■□□ 2.44
HDAC6-236ENST00000498808 URB2Q14146 1524 aaKnown RBP30.23■■■□□ 2.43
HDAC6-236ENST00000498808 TOP2AP11388 1531 aaKnown RBP30.09■■■□□ 2.41
HDAC6-236ENST00000498808 RSF1Q96T23 1441 aaPredicted RBP30.07■■■□□ 2.4
HDAC6-236ENST00000498808 RIMBP3CA6NJZ7 1639 aa30.06■■■□□ 2.4
HDAC6-236ENST00000498808 RIMBP3BA6NNM3 1639 aa30.06■■■□□ 2.4
HDAC6-236ENST00000498808 RIMBP3Q9UFD9 1639 aa30.06■■■□□ 2.4
HDAC6-236ENST00000498808 PRDM2Q13029 1718 aa29.95■■■□□ 2.38
HDAC6-236ENST00000498808 ZNF608Q9ULD9 1512 aaPredicted RBP29.95■■■□□ 2.38
HDAC6-236ENST00000498808 ARHGEF11O15085 1522 aa29.91■■■□□ 2.38
HDAC6-236ENST00000498808 IFT140Q96RY7 1462 aa29.9■■■□□ 2.38
HDAC6-236ENST00000498808 TOPBP1Q92547 1522 aa29.79■■■□□ 2.36
HDAC6-236ENST00000498808 CCDC88BA6NC98 1476 aa29.75■■■□□ 2.35
HDAC6-236ENST00000498808 EIF4G3O43432 1585 aaKnown RBP29.75■■■□□ 2.35
HDAC6-236ENST00000498808 CYB5RLQ6IPT4 315 aa29.68■■■□□ 2.34
HDAC6-236ENST00000498808 ABCC8Q09428 1581 aa29.64■■■□□ 2.33
HDAC6-236ENST00000498808 CHD1O14646 1710 aa29.63■■■□□ 2.33
HDAC6-236ENST00000498808 DNMBPQ6XZF7 1577 aa29.63■■■□□ 2.33
HDAC6-236ENST00000498808 AQRO60306 1485 aaKnown RBP eCLIP29.59■■■□□ 2.33
HDAC6-236ENST00000498808 ARAP1Q96P48 1450 aa29.59■■■□□ 2.33
HDAC6-236ENST00000498808 TARBP1Q13395 1621 aaKnown RBP29.58■■■□□ 2.33
HDAC6-236ENST00000498808 TRHP20396 242 aaPredicted RBP29.5■■■□□ 2.31
HDAC6-236ENST00000498808 POLA1P09884 1462 aaPredicted RBP29.46■■■□□ 2.31
HDAC6-236ENST00000498808 FBLN2P98095 1184 aa29.45■■■□□ 2.31
HDAC6-236ENST00000498808 RAD54L2Q9Y4B4 1467 aa29.36■■■□□ 2.29
HDAC6-236ENST00000498808 TDRD9Q8NDG6 1382 aaKnown RBP29.31■■■□□ 2.28
HDAC6-236ENST00000498808 CLASP1Q7Z460 1538 aa29.29■■■□□ 2.28
HDAC6-236ENST00000498808 SNAPC4Q5SXM2 1469 aa29.28■■■□□ 2.28
HDAC6-236ENST00000498808 SOGA1O94964 1423 aa29.28■■■□□ 2.28
HDAC6-236ENST00000498808 WDR97A6NE52 1622 aa29.2■■■□□ 2.27
HDAC6-236ENST00000498808 FGD5Q6ZNL6 1462 aa29.19■■■□□ 2.26
HDAC6-236ENST00000498808 SYNJ1O43426 1573 aa29.18■■■□□ 2.26
HDAC6-236ENST00000498808 MAGI1Q96QZ7 1491 aaPredicted RBP29.16■■■□□ 2.26
HDAC6-236ENST00000498808 CHMP7Q8WUX9 453 aaPredicted RBP29.15■■■□□ 2.26
HDAC6-236ENST00000498808 GRIN2BQ13224 1484 aa29.1■■■□□ 2.25
HDAC6-236ENST00000498808 CUX1P39880 1505 aa29.09■■■□□ 2.25
HDAC6-236ENST00000498808 SYNJ2O15056 1496 aa29.07■■■□□ 2.24
HDAC6-236ENST00000498808 AEBP2Q6ZN18 517 aaPredicted RBP29.03■■■□□ 2.24
HDAC6-236ENST00000498808 GAPVD1Q14C86 1478 aa28.98■■■□□ 2.23
HDAC6-236ENST00000498808 PBRM1Q86U86 1689 aa28.96■■■□□ 2.23
HDAC6-236ENST00000498808 ABCA5Q8WWZ7 1642 aa28.85■■■□□ 2.21
HDAC6-236ENST00000498808 ABCA10Q8WWZ4 1543 aa28.82■■■□□ 2.2
HDAC6-236ENST00000498808 ERCC6L2Q5T890 1561 aa28.81■■■□□ 2.2
HDAC6-236ENST00000498808 GRIN2AQ12879 1464 aa28.73■■■□□ 2.19
HDAC6-236ENST00000498808 CEP170Q5SW79 1584 aa28.69■■■□□ 2.18
HDAC6-236ENST00000498808 NUP160Q12769 1436 aa28.68■■■□□ 2.18
HDAC6-236ENST00000498808 ADAMTS12P58397 1594 aa28.67■■■□□ 2.18
HDAC6-236ENST00000498808 SHROOM2Q13796 1616 aa28.61■■■□□ 2.17
HDAC6-236ENST00000498808 WRNQ14191 1432 aaPredicted RBP eCLIP28.57■■■□□ 2.16
HDAC6-236ENST00000498808 KIF13AQ9H1H9 1805 aa28.55■■■□□ 2.16
HDAC6-236ENST00000498808 FHAD1B1AJZ9 1412 aa28.53■■■□□ 2.16
HDAC6-236ENST00000498808 BIVM-ERCC5R4GMW8 1640 aa28.47■■■□□ 2.15
HDAC6-236ENST00000498808 TOP2BQ02880 1626 aa28.46■■■□□ 2.15
HDAC6-236ENST00000498808 ERICH3Q5RHP9 1530 aa28.43■■■□□ 2.14
HDAC6-236ENST00000498808 PRG4Q92954 1404 aaPredicted RBP28.42■■■□□ 2.14
HDAC6-236ENST00000498808 JPH4Q96JJ6 628 aa28.34■■■□□ 2.13
HDAC6-236ENST00000498808 ABCC10Q5T3U5 1492 aa28.31■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms