RNA–Protein interactions for RNA: ENST00000498645.1

LSAMP-206, Transcript of limbic system associated membrane protein, humanhuman

TSL 3

Gene LSAMP, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSAMP-206ENST00000498645 NISCHQ9Y2I1 1504 aa27.52■■■□□ 2
LSAMP-206ENST00000498645 CCDC180Q9P1Z9 1646 aa24.71■■□□□ 1.55
LSAMP-206ENST00000498645 ABCC9O60706 1549 aa24.67■■□□□ 1.54
LSAMP-206ENST00000498645 RB1CC1Q8TDY2 1594 aa23.48■■□□□ 1.35
LSAMP-206ENST00000498645 NACADO15069 1562 aa23.31■■□□□ 1.32
LSAMP-206ENST00000498645 DCAF8L2P0C7V8 631 aa23.29■■□□□ 1.32
LSAMP-206ENST00000498645 DNAJC5BQ9UF47 199 aa23.01■■□□□ 1.27
LSAMP-206ENST00000498645 UNC13AQ9UPW8 1703 aa23.01■■□□□ 1.27
LSAMP-206ENST00000498645 PABPN1Q86U42 306 aaKnown RBP eCLIP22.96■■□□□ 1.27
LSAMP-206ENST00000498645 MYO15BQ96JP2 1530 aa22.95■■□□□ 1.26
LSAMP-206ENST00000498645 ZCCHC6Q5VYS8 1495 aaKnown RBP22.83■■□□□ 1.25
LSAMP-206ENST00000498645 BICRAQ9NZM4 1560 aa22.78■■□□□ 1.24
LSAMP-206ENST00000498645 DCAF1Q9Y4B6 1507 aa22.69■■□□□ 1.22
LSAMP-206ENST00000498645 SCRIBQ14160 1630 aa22.58■■□□□ 1.21
LSAMP-206ENST00000498645 SHROOM4Q9ULL8 1493 aa22.43■■□□□ 1.18
LSAMP-206ENST00000498645 CC2D2AQ9P2K1 1620 aa22.28■■□□□ 1.16
LSAMP-206ENST00000498645 EIF4G1Q04637 1599 aaKnown RBP22.23■■□□□ 1.15
LSAMP-206ENST00000498645 CECR2Q9BXF3 1484 aa22.19■■□□□ 1.14
LSAMP-206ENST00000498645 SMARCA4P51532 1647 aa21.49■■□□□ 1.03
LSAMP-206ENST00000498645 NCAPD3P42695 1498 aa21.48■■□□□ 1.03
LSAMP-206ENST00000498645 ATAD2BQ9ULI0 1458 aa21.45■■□□□ 1.03
LSAMP-206ENST00000498645 SMARCA2P51531 1590 aa21.42■■□□□ 1.02
LSAMP-206ENST00000498645 BAZ1AQ9NRL2 1556 aaPredicted RBP21.38■■□□□ 1.01
LSAMP-206ENST00000498645 HMGXB3Q12766 1538 aa21.37■■□□□ 1.01
LSAMP-206ENST00000498645 ERCC6Q03468 1493 aa21.31■■□□□ 1
LSAMP-206ENST00000498645 BAZ1BQ9UIG0 1483 aaKnown RBP21.3■■□□□ 1
LSAMP-206ENST00000498645 MROH2BQ7Z745 1585 aa21.23■□□□□ 0.99
LSAMP-206ENST00000498645 PEG3Q9GZU2 1588 aa21.23■□□□□ 0.99
LSAMP-206ENST00000498645 NESP48681 1621 aa21.2■□□□□ 0.98
LSAMP-206ENST00000498645 CUX2O14529 1486 aa21.18■□□□□ 0.98
LSAMP-206ENST00000498645 DNAJC5Q9H3Z4 198 aa21.06■□□□□ 0.96
LSAMP-206ENST00000498645 LAMC3Q9Y6N6 1575 aa21.04■□□□□ 0.96
LSAMP-206ENST00000498645 WIZO95785 1651 aa21.02■□□□□ 0.96
LSAMP-206ENST00000498645 KIF21AQ7Z4S6 1674 aa20.97■□□□□ 0.95
LSAMP-206ENST00000498645 THOC2Q8NI27 1593 aaKnown RBP20.97■□□□□ 0.95
LSAMP-206ENST00000498645 PDS5BQ9NTI5 1447 aa20.9■□□□□ 0.94
LSAMP-206ENST00000498645 CADPSQ9ULU8 1353 aa20.85■□□□□ 0.93
LSAMP-206ENST00000498645 RSF1Q96T23 1441 aaPredicted RBP20.78■□□□□ 0.92
LSAMP-206ENST00000498645 MRC2Q9UBG0 1479 aa20.74■□□□□ 0.91
LSAMP-206ENST00000498645 TOP2AP11388 1531 aaKnown RBP20.73■□□□□ 0.91
LSAMP-206ENST00000498645 CEP164Q9UPV0 1460 aa20.69■□□□□ 0.9
LSAMP-206ENST00000498645 WDR62O43379 1518 aa20.68■□□□□ 0.9
LSAMP-206ENST00000498645 FANCD2Q9BXW9 1451 aa20.65■□□□□ 0.9
LSAMP-206ENST00000498645 CFTRP13569 1480 aa20.62■□□□□ 0.89
LSAMP-206ENST00000498645 PRDM2Q13029 1718 aa20.53■□□□□ 0.88
LSAMP-206ENST00000498645 URB2Q14146 1524 aaKnown RBP20.48■□□□□ 0.87
LSAMP-206ENST00000498645 CCDC88BA6NC98 1476 aa20.48■□□□□ 0.87
LSAMP-206ENST00000498645 TRIM41Q8WV44 630 aa20.28■□□□□ 0.84
LSAMP-206ENST00000498645 TOPBP1Q92547 1522 aa20.27■□□□□ 0.84
LSAMP-206ENST00000498645 IFT140Q96RY7 1462 aa20.24■□□□□ 0.83
LSAMP-206ENST00000498645 ZNF608Q9ULD9 1512 aaPredicted RBP20.23■□□□□ 0.83
LSAMP-206ENST00000498645 OSCARQ8IYS5 282 aa20.22■□□□□ 0.83
LSAMP-206ENST00000498645 DNMBPQ6XZF7 1577 aa20.21■□□□□ 0.83
LSAMP-206ENST00000498645 ABCC8Q09428 1581 aa20.19■□□□□ 0.82
LSAMP-206ENST00000498645 EIF4G3O43432 1585 aaKnown RBP20.15■□□□□ 0.82
LSAMP-206ENST00000498645 TARBP1Q13395 1621 aaKnown RBP20.09■□□□□ 0.81
LSAMP-206ENST00000498645 POLA1P09884 1462 aaPredicted RBP20.06■□□□□ 0.8
LSAMP-206ENST00000498645 AQRO60306 1485 aaKnown RBP eCLIP20.05■□□□□ 0.8
LSAMP-206ENST00000498645 CHD1O14646 1710 aa20.02■□□□□ 0.79
LSAMP-206ENST00000498645 RIMBP3CA6NJZ7 1639 aa20.02■□□□□ 0.79
LSAMP-206ENST00000498645 RIMBP3BA6NNM3 1639 aa20.02■□□□□ 0.79
LSAMP-206ENST00000498645 RIMBP3Q9UFD9 1639 aa20.02■□□□□ 0.79
LSAMP-206ENST00000498645 RAD54L2Q9Y4B4 1467 aa20.01■□□□□ 0.79
LSAMP-206ENST00000498645 SUPT5HO00267 1087 aaKnown RBP20■□□□□ 0.79
LSAMP-206ENST00000498645 SOGA1O94964 1423 aa19.97■□□□□ 0.79
LSAMP-206ENST00000498645 FGD5Q6ZNL6 1462 aa19.97■□□□□ 0.79
LSAMP-206ENST00000498645 CUX1P39880 1505 aa19.96■□□□□ 0.79
LSAMP-206ENST00000498645 FBLN2P98095 1184 aa19.95■□□□□ 0.78
LSAMP-206ENST00000498645 TDRD9Q8NDG6 1382 aaKnown RBP19.94■□□□□ 0.78
LSAMP-206ENST00000498645 ARHGEF11O15085 1522 aa19.93■□□□□ 0.78
LSAMP-206ENST00000498645 SNAPC4Q5SXM2 1469 aa19.86■□□□□ 0.77
LSAMP-206ENST00000498645 WDR97A6NE52 1622 aa19.86■□□□□ 0.77
LSAMP-206ENST00000498645 PBRM1Q86U86 1689 aa19.79■□□□□ 0.76
LSAMP-206ENST00000498645 GRIN2BQ13224 1484 aa19.79■□□□□ 0.76
LSAMP-206ENST00000498645 CYB5RLQ6IPT4 315 aa19.78■□□□□ 0.76
LSAMP-206ENST00000498645 MAGI1Q96QZ7 1491 aaPredicted RBP19.78■□□□□ 0.76
LSAMP-206ENST00000498645 CHMP7Q8WUX9 453 aaPredicted RBP19.77■□□□□ 0.76
LSAMP-206ENST00000498645 SYNJ1O43426 1573 aa19.74■□□□□ 0.75
LSAMP-206ENST00000498645 GAPVD1Q14C86 1478 aa19.73■□□□□ 0.75
LSAMP-206ENST00000498645 ARAP1Q96P48 1450 aa19.73■□□□□ 0.75
LSAMP-206ENST00000498645 SYNJ2O15056 1496 aa19.72■□□□□ 0.75
LSAMP-206ENST00000498645 CLASP1Q7Z460 1538 aa19.71■□□□□ 0.75
LSAMP-206ENST00000498645 ABCA10Q8WWZ4 1543 aa19.71■□□□□ 0.75
LSAMP-206ENST00000498645 ABCA5Q8WWZ7 1642 aa19.71■□□□□ 0.75
LSAMP-206ENST00000498645 BIVM-ERCC5R4GMW8 1640 aa19.66■□□□□ 0.74
LSAMP-206ENST00000498645 TOP2BQ02880 1626 aa19.65■□□□□ 0.74
LSAMP-206ENST00000498645 WRNQ14191 1432 aaPredicted RBP eCLIP19.65■□□□□ 0.74
LSAMP-206ENST00000498645 TRHP20396 242 aaPredicted RBP19.58■□□□□ 0.72
LSAMP-206ENST00000498645 ADAMTS12P58397 1594 aa19.57■□□□□ 0.72
LSAMP-206ENST00000498645 GRIN2AQ12879 1464 aa19.54■□□□□ 0.72
LSAMP-206ENST00000498645 CEP170Q5SW79 1584 aa19.49■□□□□ 0.71
LSAMP-206ENST00000498645 ERICH3Q5RHP9 1530 aa19.47■□□□□ 0.71
LSAMP-206ENST00000498645 FHAD1B1AJZ9 1412 aa19.47■□□□□ 0.71
LSAMP-206ENST00000498645 ERCC6L2Q5T890 1561 aa19.45■□□□□ 0.7
LSAMP-206ENST00000498645 NUP160Q12769 1436 aa19.44■□□□□ 0.7
LSAMP-206ENST00000498645 SHROOM2Q13796 1616 aa19.38■□□□□ 0.69
LSAMP-206ENST00000498645 RUSC2Q8N2Y8 1516 aa19.3■□□□□ 0.68
LSAMP-206ENST00000498645 PRG4Q92954 1404 aaPredicted RBP19.28■□□□□ 0.68
LSAMP-206ENST00000498645 KIF27Q86VH2 1401 aa19.25■□□□□ 0.67
LSAMP-206ENST00000498645 JPH4Q96JJ6 628 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms