RNA–Protein interactions for RNA: ENST00000498579.5

ECM1-207, Transcript of extracellular matrix protein 1, humanhuman

TSL 3

Gene ECM1, Length 943 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECM1-207ENST00000498579 NISCHQ9Y2I1 1504 aa46.34■■■■■ 5.01
ECM1-207ENST00000498579 CCDC180Q9P1Z9 1646 aa41.36■■■■■ 4.21
ECM1-207ENST00000498579 ABCC9O60706 1549 aa40.98■■■■■ 4.15
ECM1-207ENST00000498579 RB1CC1Q8TDY2 1594 aa39.25■■■■□ 3.87
ECM1-207ENST00000498579 NACADO15069 1562 aa39.1■■■■□ 3.85
ECM1-207ENST00000498579 DCAF8L2P0C7V8 631 aa38.95■■■■□ 3.83
ECM1-207ENST00000498579 MYO15BQ96JP2 1530 aa38.75■■■■□ 3.79
ECM1-207ENST00000498579 ZCCHC6Q5VYS8 1495 aaKnown RBP38.5■■■■□ 3.75
ECM1-207ENST00000498579 DCAF1Q9Y4B6 1507 aa38.38■■■■□ 3.73
ECM1-207ENST00000498579 PABPN1Q86U42 306 aaKnown RBP eCLIP38.22■■■■□ 3.71
ECM1-207ENST00000498579 UNC13AQ9UPW8 1703 aa38.09■■■■□ 3.69
ECM1-207ENST00000498579 DNAJC5BQ9UF47 199 aa38.03■■■■□ 3.68
ECM1-207ENST00000498579 BICRAQ9NZM4 1560 aa37.96■■■■□ 3.67
ECM1-207ENST00000498579 SHROOM4Q9ULL8 1493 aa37.75■■■■□ 3.63
ECM1-207ENST00000498579 SCRIBQ14160 1630 aa37.68■■■■□ 3.62
ECM1-207ENST00000498579 EIF4G1Q04637 1599 aaKnown RBP37.08■■■■□ 3.53
ECM1-207ENST00000498579 CC2D2AQ9P2K1 1620 aa37.02■■■■□ 3.52
ECM1-207ENST00000498579 CECR2Q9BXF3 1484 aa36.94■■■■□ 3.5
ECM1-207ENST00000498579 NCAPD3P42695 1498 aa36.11■■■■□ 3.37
ECM1-207ENST00000498579 ATAD2BQ9ULI0 1458 aa36.02■■■■□ 3.36
ECM1-207ENST00000498579 SMARCA4P51532 1647 aa36.01■■■■□ 3.35
ECM1-207ENST00000498579 BAZ1AQ9NRL2 1556 aaPredicted RBP35.98■■■■□ 3.35
ECM1-207ENST00000498579 SMARCA2P51531 1590 aa35.98■■■■□ 3.35
ECM1-207ENST00000498579 HMGXB3Q12766 1538 aa35.86■■■■□ 3.33
ECM1-207ENST00000498579 PEG3Q9GZU2 1588 aa35.72■■■■□ 3.31
ECM1-207ENST00000498579 BAZ1BQ9UIG0 1483 aaKnown RBP35.71■■■■□ 3.31
ECM1-207ENST00000498579 MROH2BQ7Z745 1585 aa35.65■■■■□ 3.3
ECM1-207ENST00000498579 ERCC6Q03468 1493 aa35.45■■■■□ 3.27
ECM1-207ENST00000498579 NESP48681 1621 aa35.27■■■■□ 3.24
ECM1-207ENST00000498579 CUX2O14529 1486 aa35.27■■■■□ 3.24
ECM1-207ENST00000498579 LAMC3Q9Y6N6 1575 aa35.2■■■■□ 3.23
ECM1-207ENST00000498579 WIZO95785 1651 aa35.17■■■■□ 3.22
ECM1-207ENST00000498579 RSF1Q96T23 1441 aaPredicted RBP35.12■■■■□ 3.21
ECM1-207ENST00000498579 PDS5BQ9NTI5 1447 aa35.06■■■■□ 3.2
ECM1-207ENST00000498579 CADPSQ9ULU8 1353 aa35.04■■■■□ 3.2
ECM1-207ENST00000498579 TOP2AP11388 1531 aaKnown RBP34.89■■■■□ 3.18
ECM1-207ENST00000498579 THOC2Q8NI27 1593 aaKnown RBP34.84■■■■□ 3.17
ECM1-207ENST00000498579 DNAJC5Q9H3Z4 198 aa34.76■■■■□ 3.16
ECM1-207ENST00000498579 KIF21AQ7Z4S6 1674 aa34.75■■■■□ 3.15
ECM1-207ENST00000498579 CFTRP13569 1480 aa34.71■■■■□ 3.15
ECM1-207ENST00000498579 MRC2Q9UBG0 1479 aa34.67■■■■□ 3.14
ECM1-207ENST00000498579 CEP164Q9UPV0 1460 aa34.62■■■■□ 3.13
ECM1-207ENST00000498579 FANCD2Q9BXW9 1451 aa34.6■■■■□ 3.13
ECM1-207ENST00000498579 WDR62O43379 1518 aa34.55■■■■□ 3.12
ECM1-207ENST00000498579 CCDC88BA6NC98 1476 aa34.46■■■■□ 3.11
ECM1-207ENST00000498579 URB2Q14146 1524 aaKnown RBP34.23■■■■□ 3.07
ECM1-207ENST00000498579 PRDM2Q13029 1718 aa34.2■■■■□ 3.07
ECM1-207ENST00000498579 ABCC8Q09428 1581 aa34.03■■■■□ 3.04
ECM1-207ENST00000498579 TOPBP1Q92547 1522 aa33.97■■■■□ 3.03
ECM1-207ENST00000498579 IFT140Q96RY7 1462 aa33.95■■■■□ 3.02
ECM1-207ENST00000498579 DNMBPQ6XZF7 1577 aa33.88■■■■□ 3.01
ECM1-207ENST00000498579 SUPT5HO00267 1087 aaKnown RBP33.86■■■■□ 3.01
ECM1-207ENST00000498579 OSCARQ8IYS5 282 aa33.74■■■□□ 2.99
ECM1-207ENST00000498579 ZNF608Q9ULD9 1512 aaPredicted RBP33.73■■■□□ 2.99
ECM1-207ENST00000498579 POLA1P09884 1462 aaPredicted RBP33.65■■■□□ 2.98
ECM1-207ENST00000498579 EIF4G3O43432 1585 aaKnown RBP33.56■■■□□ 2.96
ECM1-207ENST00000498579 TARBP1Q13395 1621 aaKnown RBP33.56■■■□□ 2.96
ECM1-207ENST00000498579 SOGA1O94964 1423 aa33.54■■■□□ 2.96
ECM1-207ENST00000498579 AQRO60306 1485 aaKnown RBP eCLIP33.5■■■□□ 2.95
ECM1-207ENST00000498579 FGD5Q6ZNL6 1462 aa33.49■■■□□ 2.95
ECM1-207ENST00000498579 CUX1P39880 1505 aa33.48■■■□□ 2.95
ECM1-207ENST00000498579 RAD54L2Q9Y4B4 1467 aa33.47■■■□□ 2.95
ECM1-207ENST00000498579 WDR97A6NE52 1622 aa33.39■■■□□ 2.94
ECM1-207ENST00000498579 TDRD9Q8NDG6 1382 aaKnown RBP33.38■■■□□ 2.93
ECM1-207ENST00000498579 TRIM41Q8WV44 630 aa33.36■■■□□ 2.93
ECM1-207ENST00000498579 FBLN2P98095 1184 aa33.27■■■□□ 2.92
ECM1-207ENST00000498579 GRIN2BQ13224 1484 aa33.22■■■□□ 2.91
ECM1-207ENST00000498579 SNAPC4Q5SXM2 1469 aa33.2■■■□□ 2.91
ECM1-207ENST00000498579 MAGI1Q96QZ7 1491 aaPredicted RBP33.19■■■□□ 2.9
ECM1-207ENST00000498579 ABCA10Q8WWZ4 1543 aa33.18■■■□□ 2.9
ECM1-207ENST00000498579 WRNQ14191 1432 aaPredicted RBP eCLIP33.17■■■□□ 2.9
ECM1-207ENST00000498579 CHD1O14646 1710 aa33.14■■■□□ 2.89
ECM1-207ENST00000498579 GAPVD1Q14C86 1478 aa33.13■■■□□ 2.89
ECM1-207ENST00000498579 CHMP7Q8WUX9 453 aaPredicted RBP33.13■■■□□ 2.89
ECM1-207ENST00000498579 ARHGEF11O15085 1522 aa33.11■■■□□ 2.89
ECM1-207ENST00000498579 RIMBP3CA6NJZ7 1639 aa33.1■■■□□ 2.89
ECM1-207ENST00000498579 RIMBP3BA6NNM3 1639 aa33.1■■■□□ 2.89
ECM1-207ENST00000498579 RIMBP3Q9UFD9 1639 aa33.1■■■□□ 2.89
ECM1-207ENST00000498579 TOP2BQ02880 1626 aa33.08■■■□□ 2.89
ECM1-207ENST00000498579 SYNJ2O15056 1496 aa33.05■■■□□ 2.88
ECM1-207ENST00000498579 BIVM-ERCC5R4GMW8 1640 aa33.03■■■□□ 2.88
ECM1-207ENST00000498579 ABCA5Q8WWZ7 1642 aa33■■■□□ 2.87
ECM1-207ENST00000498579 SYNJ1O43426 1573 aa32.99■■■□□ 2.87
ECM1-207ENST00000498579 PBRM1Q86U86 1689 aa32.94■■■□□ 2.86
ECM1-207ENST00000498579 CLASP1Q7Z460 1538 aa32.89■■■□□ 2.86
ECM1-207ENST00000498579 CYB5RLQ6IPT4 315 aa32.87■■■□□ 2.85
ECM1-207ENST00000498579 ARAP1Q96P48 1450 aa32.8■■■□□ 2.84
ECM1-207ENST00000498579 ERICH3Q5RHP9 1530 aa32.77■■■□□ 2.84
ECM1-207ENST00000498579 FHAD1B1AJZ9 1412 aa32.77■■■□□ 2.84
ECM1-207ENST00000498579 GRIN2AQ12879 1464 aa32.76■■■□□ 2.84
ECM1-207ENST00000498579 ADAMTS12P58397 1594 aa32.75■■■□□ 2.83
ECM1-207ENST00000498579 NUP160Q12769 1436 aa32.66■■■□□ 2.82
ECM1-207ENST00000498579 KIF27Q86VH2 1401 aa32.55■■■□□ 2.8
ECM1-207ENST00000498579 CEP170Q5SW79 1584 aa32.54■■■□□ 2.8
ECM1-207ENST00000498579 IGF1RP08069 1367 aa32.44■■■□□ 2.78
ECM1-207ENST00000498579 TRHP20396 242 aaPredicted RBP32.4■■■□□ 2.78
ECM1-207ENST00000498579 SHROOM2Q13796 1616 aa32.37■■■□□ 2.77
ECM1-207ENST00000498579 JPH4Q96JJ6 628 aa32.35■■■□□ 2.77
ECM1-207ENST00000498579 CUL7Q14999 1698 aa32.33■■■□□ 2.77
ECM1-207ENST00000498579 ERCC6L2Q5T890 1561 aa32.32■■■□□ 2.76
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms