RNA–Protein interactions for RNA: ENST00000498548.1

NR1H3-227, Transcript of nuclear receptor subfamily 1 group H member 3, humanhuman

TSL 3

Gene NR1H3, Length 559 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H3-227ENST00000498548 NISCHQ9Y2I1 1504 aa39.68■■■■□ 3.94
NR1H3-227ENST00000498548 CCDC180Q9P1Z9 1646 aa35.36■■■■□ 3.25
NR1H3-227ENST00000498548 ABCC9O60706 1549 aa35.11■■■■□ 3.21
NR1H3-227ENST00000498548 RB1CC1Q8TDY2 1594 aa33.51■■■□□ 2.95
NR1H3-227ENST00000498548 DCAF8L2P0C7V8 631 aa33.5■■■□□ 2.95
NR1H3-227ENST00000498548 NACADO15069 1562 aa33.35■■■□□ 2.93
NR1H3-227ENST00000498548 MYO15BQ96JP2 1530 aa32.95■■■□□ 2.87
NR1H3-227ENST00000498548 ZCCHC6Q5VYS8 1495 aaKnown RBP32.94■■■□□ 2.86
NR1H3-227ENST00000498548 UNC13AQ9UPW8 1703 aa32.84■■■□□ 2.85
NR1H3-227ENST00000498548 PABPN1Q86U42 306 aaKnown RBP eCLIP32.83■■■□□ 2.85
NR1H3-227ENST00000498548 DCAF1Q9Y4B6 1507 aa32.71■■■□□ 2.83
NR1H3-227ENST00000498548 DNAJC5BQ9UF47 199 aa32.65■■■□□ 2.82
NR1H3-227ENST00000498548 BICRAQ9NZM4 1560 aa32.56■■■□□ 2.8
NR1H3-227ENST00000498548 SCRIBQ14160 1630 aa32.37■■■□□ 2.77
NR1H3-227ENST00000498548 SHROOM4Q9ULL8 1493 aa31.99■■■□□ 2.71
NR1H3-227ENST00000498548 EIF4G1Q04637 1599 aaKnown RBP31.71■■■□□ 2.67
NR1H3-227ENST00000498548 CC2D2AQ9P2K1 1620 aa31.71■■■□□ 2.67
NR1H3-227ENST00000498548 CECR2Q9BXF3 1484 aa31.54■■■□□ 2.64
NR1H3-227ENST00000498548 SMARCA4P51532 1647 aa30.87■■■□□ 2.53
NR1H3-227ENST00000498548 NCAPD3P42695 1498 aa30.8■■■□□ 2.52
NR1H3-227ENST00000498548 ATAD2BQ9ULI0 1458 aa30.8■■■□□ 2.52
NR1H3-227ENST00000498548 BAZ1AQ9NRL2 1556 aaPredicted RBP30.74■■■□□ 2.51
NR1H3-227ENST00000498548 SMARCA2P51531 1590 aa30.69■■■□□ 2.5
NR1H3-227ENST00000498548 MROH2BQ7Z745 1585 aa30.62■■■□□ 2.49
NR1H3-227ENST00000498548 HMGXB3Q12766 1538 aa30.57■■■□□ 2.49
NR1H3-227ENST00000498548 BAZ1BQ9UIG0 1483 aaKnown RBP30.52■■■□□ 2.48
NR1H3-227ENST00000498548 PEG3Q9GZU2 1588 aa30.49■■■□□ 2.47
NR1H3-227ENST00000498548 WIZO95785 1651 aa30.31■■■□□ 2.44
NR1H3-227ENST00000498548 NESP48681 1621 aa30.3■■■□□ 2.44
NR1H3-227ENST00000498548 ERCC6Q03468 1493 aa30.25■■■□□ 2.43
NR1H3-227ENST00000498548 RSF1Q96T23 1441 aaPredicted RBP30.13■■■□□ 2.41
NR1H3-227ENST00000498548 LAMC3Q9Y6N6 1575 aa30.03■■■□□ 2.4
NR1H3-227ENST00000498548 CUX2O14529 1486 aa29.99■■■□□ 2.39
NR1H3-227ENST00000498548 CADPSQ9ULU8 1353 aa29.91■■■□□ 2.38
NR1H3-227ENST00000498548 KIF21AQ7Z4S6 1674 aa29.9■■■□□ 2.38
NR1H3-227ENST00000498548 TOP2AP11388 1531 aaKnown RBP29.87■■■□□ 2.37
NR1H3-227ENST00000498548 PDS5BQ9NTI5 1447 aa29.87■■■□□ 2.37
NR1H3-227ENST00000498548 THOC2Q8NI27 1593 aaKnown RBP29.82■■■□□ 2.36
NR1H3-227ENST00000498548 CFTRP13569 1480 aa29.64■■■□□ 2.34
NR1H3-227ENST00000498548 MRC2Q9UBG0 1479 aa29.6■■■□□ 2.33
NR1H3-227ENST00000498548 DNAJC5Q9H3Z4 198 aa29.59■■■□□ 2.33
NR1H3-227ENST00000498548 CCDC88BA6NC98 1476 aa29.59■■■□□ 2.33
NR1H3-227ENST00000498548 FANCD2Q9BXW9 1451 aa29.59■■■□□ 2.33
NR1H3-227ENST00000498548 CEP164Q9UPV0 1460 aa29.56■■■□□ 2.32
NR1H3-227ENST00000498548 WDR62O43379 1518 aa29.49■■■□□ 2.31
NR1H3-227ENST00000498548 PRDM2Q13029 1718 aa29.39■■■□□ 2.3
NR1H3-227ENST00000498548 URB2Q14146 1524 aaKnown RBP29.34■■■□□ 2.29
NR1H3-227ENST00000498548 SUPT5HO00267 1087 aaKnown RBP29.23■■■□□ 2.27
NR1H3-227ENST00000498548 TOPBP1Q92547 1522 aa29.08■■■□□ 2.25
NR1H3-227ENST00000498548 ABCC8Q09428 1581 aa28.97■■■□□ 2.23
NR1H3-227ENST00000498548 DNMBPQ6XZF7 1577 aa28.97■■■□□ 2.23
NR1H3-227ENST00000498548 IFT140Q96RY7 1462 aa28.95■■■□□ 2.22
NR1H3-227ENST00000498548 ZNF608Q9ULD9 1512 aaPredicted RBP28.93■■■□□ 2.22
NR1H3-227ENST00000498548 POLA1P09884 1462 aaPredicted RBP28.8■■■□□ 2.2
NR1H3-227ENST00000498548 TARBP1Q13395 1621 aaKnown RBP28.77■■■□□ 2.2
NR1H3-227ENST00000498548 OSCARQ8IYS5 282 aa28.77■■■□□ 2.2
NR1H3-227ENST00000498548 RAD54L2Q9Y4B4 1467 aa28.76■■■□□ 2.19
NR1H3-227ENST00000498548 CUX1P39880 1505 aa28.74■■■□□ 2.19
NR1H3-227ENST00000498548 EIF4G3O43432 1585 aaKnown RBP28.74■■■□□ 2.19
NR1H3-227ENST00000498548 AQRO60306 1485 aaKnown RBP eCLIP28.73■■■□□ 2.191e-7■■■□□ 16.7
NR1H3-227ENST00000498548 SOGA1O94964 1423 aa28.7■■■□□ 2.19
NR1H3-227ENST00000498548 FGD5Q6ZNL6 1462 aa28.69■■■□□ 2.18
NR1H3-227ENST00000498548 TDRD9Q8NDG6 1382 aaKnown RBP28.63■■■□□ 2.17
NR1H3-227ENST00000498548 TRIM41Q8WV44 630 aa28.57■■■□□ 2.16
NR1H3-227ENST00000498548 FBLN2P98095 1184 aa28.52■■■□□ 2.16
NR1H3-227ENST00000498548 CHD1O14646 1710 aa28.5■■■□□ 2.15
NR1H3-227ENST00000498548 WDR97A6NE52 1622 aa28.43■■■□□ 2.14
NR1H3-227ENST00000498548 SNAPC4Q5SXM2 1469 aa28.42■■■□□ 2.14
NR1H3-227ENST00000498548 WRNQ14191 1432 aaPredicted RBP eCLIP28.4■■■□□ 2.14
NR1H3-227ENST00000498548 SYNJ1O43426 1573 aa28.37■■■□□ 2.13
NR1H3-227ENST00000498548 GRIN2BQ13224 1484 aa28.36■■■□□ 2.13
NR1H3-227ENST00000498548 RIMBP3CA6NJZ7 1639 aa28.36■■■□□ 2.13
NR1H3-227ENST00000498548 RIMBP3BA6NNM3 1639 aa28.36■■■□□ 2.13
NR1H3-227ENST00000498548 RIMBP3Q9UFD9 1639 aa28.36■■■□□ 2.13
NR1H3-227ENST00000498548 ABCA10Q8WWZ4 1543 aa28.35■■■□□ 2.13
NR1H3-227ENST00000498548 TOP2BQ02880 1626 aa28.35■■■□□ 2.13
NR1H3-227ENST00000498548 BIVM-ERCC5R4GMW8 1640 aa28.35■■■□□ 2.13
NR1H3-227ENST00000498548 GAPVD1Q14C86 1478 aa28.34■■■□□ 2.13
NR1H3-227ENST00000498548 CHMP7Q8WUX9 453 aaPredicted RBP28.32■■■□□ 2.12
NR1H3-227ENST00000498548 PBRM1Q86U86 1689 aa28.32■■■□□ 2.12
NR1H3-227ENST00000498548 MAGI1Q96QZ7 1491 aaPredicted RBP28.29■■■□□ 2.12
NR1H3-227ENST00000498548 ARHGEF11O15085 1522 aa28.28■■■□□ 2.12
NR1H3-227ENST00000498548 ABCA5Q8WWZ7 1642 aa28.27■■■□□ 2.12
NR1H3-227ENST00000498548 SYNJ2O15056 1496 aa28.21■■■□□ 2.11
NR1H3-227ENST00000498548 CYB5RLQ6IPT4 315 aa28.14■■■□□ 2.1
NR1H3-227ENST00000498548 CLASP1Q7Z460 1538 aa28.12■■■□□ 2.09
NR1H3-227ENST00000498548 ARAP1Q96P48 1450 aa28.04■■■□□ 2.08
NR1H3-227ENST00000498548 ADAMTS12P58397 1594 aa28.03■■■□□ 2.08
NR1H3-227ENST00000498548 GRIN2AQ12879 1464 aa28■■■□□ 2.07
NR1H3-227ENST00000498548 ERICH3Q5RHP9 1530 aa27.98■■■□□ 2.07
NR1H3-227ENST00000498548 FHAD1B1AJZ9 1412 aa27.98■■■□□ 2.07
NR1H3-227ENST00000498548 CEP170Q5SW79 1584 aa27.92■■■□□ 2.06
NR1H3-227ENST00000498548 NUP160Q12769 1436 aa27.88■■■□□ 2.05
NR1H3-227ENST00000498548 KIF27Q86VH2 1401 aa27.82■■■□□ 2.04
NR1H3-227ENST00000498548 ERCC6L2Q5T890 1561 aa27.81■■■□□ 2.04
NR1H3-227ENST00000498548 IGF1RP08069 1367 aa27.8■■■□□ 2.04
NR1H3-227ENST00000498548 SHROOM2Q13796 1616 aa27.7■■■□□ 2.03
NR1H3-227ENST00000498548 TRHP20396 242 aaPredicted RBP27.7■■■□□ 2.02
NR1H3-227ENST00000498548 JPH4Q96JJ6 628 aa27.68■■■□□ 2.02
NR1H3-227ENST00000498548 CUL7Q14999 1698 aa27.66■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms