RNA–Protein interactions for RNA: ENST00000498539.1

LRCH4-210, Transcript of leucine rich repeats and calponin homology domain containing 4, humanhuman

TSL 3

Gene LRCH4, Length 819 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH4-210ENST00000498539 NISCHQ9Y2I1 1504 aa39.74■■■■□ 3.95
LRCH4-210ENST00000498539 ABCC9O60706 1549 aa35.73■■■■□ 3.31
LRCH4-210ENST00000498539 CCDC180Q9P1Z9 1646 aa35.72■■■■□ 3.31
LRCH4-210ENST00000498539 RB1CC1Q8TDY2 1594 aa33.94■■■■□ 3.02
LRCH4-210ENST00000498539 NACADO15069 1562 aa33.68■■■□□ 2.98
LRCH4-210ENST00000498539 DNAJC5BQ9UF47 199 aa33.47■■■□□ 2.95
LRCH4-210ENST00000498539 DCAF8L2P0C7V8 631 aa33.44■■■□□ 2.94
LRCH4-210ENST00000498539 UNC13AQ9UPW8 1703 aa33.35■■■□□ 2.93
LRCH4-210ENST00000498539 PABPN1Q86U42 306 aaKnown RBP eCLIP33.19■■■□□ 2.9
LRCH4-210ENST00000498539 MYO15BQ96JP2 1530 aa33.18■■■□□ 2.9
LRCH4-210ENST00000498539 BICRAQ9NZM4 1560 aa33.05■■■□□ 2.88
LRCH4-210ENST00000498539 ZCCHC6Q5VYS8 1495 aaKnown RBP32.98■■■□□ 2.87
LRCH4-210ENST00000498539 DCAF1Q9Y4B6 1507 aa32.77■■■□□ 2.84
LRCH4-210ENST00000498539 SCRIBQ14160 1630 aa32.62■■■□□ 2.81
LRCH4-210ENST00000498539 SHROOM4Q9ULL8 1493 aa32.46■■■□□ 2.79
LRCH4-210ENST00000498539 CC2D2AQ9P2K1 1620 aa32.29■■■□□ 2.76
LRCH4-210ENST00000498539 EIF4G1Q04637 1599 aaKnown RBP32.2■■■□□ 2.75
LRCH4-210ENST00000498539 CECR2Q9BXF3 1484 aa32.14■■■□□ 2.74
LRCH4-210ENST00000498539 NCAPD3P42695 1498 aa31.07■■■□□ 2.56
LRCH4-210ENST00000498539 SMARCA4P51532 1647 aa31.06■■■□□ 2.56
LRCH4-210ENST00000498539 ATAD2BQ9ULI0 1458 aa31.02■■■□□ 2.56
LRCH4-210ENST00000498539 SMARCA2P51531 1590 aa30.93■■■□□ 2.54
LRCH4-210ENST00000498539 HMGXB3Q12766 1538 aa30.91■■■□□ 2.54
LRCH4-210ENST00000498539 BAZ1AQ9NRL2 1556 aaPredicted RBP30.83■■■□□ 2.53
LRCH4-210ENST00000498539 ERCC6Q03468 1493 aa30.79■■■□□ 2.52
LRCH4-210ENST00000498539 BAZ1BQ9UIG0 1483 aaKnown RBP30.74■■■□□ 2.51
LRCH4-210ENST00000498539 NESP48681 1621 aa30.72■■■□□ 2.51
LRCH4-210ENST00000498539 CUX2O14529 1486 aa30.71■■■□□ 2.51
LRCH4-210ENST00000498539 PEG3Q9GZU2 1588 aa30.71■■■□□ 2.51
LRCH4-210ENST00000498539 MROH2BQ7Z745 1585 aa30.68■■■□□ 2.5
LRCH4-210ENST00000498539 DNAJC5Q9H3Z4 198 aa30.63■■■□□ 2.49
LRCH4-210ENST00000498539 THOC2Q8NI27 1593 aaKnown RBP30.45■■■□□ 2.46
LRCH4-210ENST00000498539 LAMC3Q9Y6N6 1575 aa30.42■■■□□ 2.46
LRCH4-210ENST00000498539 KIF21AQ7Z4S6 1674 aa30.38■■■□□ 2.45
LRCH4-210ENST00000498539 WIZO95785 1651 aa30.35■■■□□ 2.45
LRCH4-210ENST00000498539 PDS5BQ9NTI5 1447 aa30.17■■■□□ 2.42
LRCH4-210ENST00000498539 CADPSQ9ULU8 1353 aa30.11■■■□□ 2.41
LRCH4-210ENST00000498539 MRC2Q9UBG0 1479 aa30■■■□□ 2.39
LRCH4-210ENST00000498539 RSF1Q96T23 1441 aaPredicted RBP29.97■■■□□ 2.39
LRCH4-210ENST00000498539 WDR62O43379 1518 aa29.96■■■□□ 2.39
LRCH4-210ENST00000498539 TOP2AP11388 1531 aaKnown RBP29.91■■■□□ 2.38
LRCH4-210ENST00000498539 CEP164Q9UPV0 1460 aa29.88■■■□□ 2.37
LRCH4-210ENST00000498539 FANCD2Q9BXW9 1451 aa29.84■■■□□ 2.37
LRCH4-210ENST00000498539 CFTRP13569 1480 aa29.81■■■□□ 2.36
LRCH4-210ENST00000498539 PRDM2Q13029 1718 aa29.65■■■□□ 2.34
LRCH4-210ENST00000498539 URB2Q14146 1524 aaKnown RBP29.65■■■□□ 2.34
LRCH4-210ENST00000498539 CCDC88BA6NC98 1476 aa29.53■■■□□ 2.32
LRCH4-210ENST00000498539 TRIM41Q8WV44 630 aa29.37■■■□□ 2.29
LRCH4-210ENST00000498539 TOPBP1Q92547 1522 aa29.3■■■□□ 2.28
LRCH4-210ENST00000498539 ZNF608Q9ULD9 1512 aaPredicted RBP29.3■■■□□ 2.28
LRCH4-210ENST00000498539 IFT140Q96RY7 1462 aa29.24■■■□□ 2.27
LRCH4-210ENST00000498539 DNMBPQ6XZF7 1577 aa29.21■■■□□ 2.27
LRCH4-210ENST00000498539 OSCARQ8IYS5 282 aa29.2■■■□□ 2.26
LRCH4-210ENST00000498539 EIF4G3O43432 1585 aaKnown RBP29.18■■■□□ 2.26
LRCH4-210ENST00000498539 ABCC8Q09428 1581 aa29.1■■■□□ 2.25
LRCH4-210ENST00000498539 TARBP1Q13395 1621 aaKnown RBP29.08■■■□□ 2.25
LRCH4-210ENST00000498539 RIMBP3CA6NJZ7 1639 aa29.05■■■□□ 2.24
LRCH4-210ENST00000498539 RIMBP3BA6NNM3 1639 aa29.05■■■□□ 2.24
LRCH4-210ENST00000498539 RIMBP3Q9UFD9 1639 aa29.05■■■□□ 2.24
LRCH4-210ENST00000498539 POLA1P09884 1462 aaPredicted RBP29■■■□□ 2.23
LRCH4-210ENST00000498539 CHD1O14646 1710 aa28.99■■■□□ 2.23
LRCH4-210ENST00000498539 AQRO60306 1485 aaKnown RBP eCLIP28.97■■■□□ 2.23
LRCH4-210ENST00000498539 ARHGEF11O15085 1522 aa28.91■■■□□ 2.22
LRCH4-210ENST00000498539 RAD54L2Q9Y4B4 1467 aa28.91■■■□□ 2.22
LRCH4-210ENST00000498539 CUX1P39880 1505 aa28.84■■■□□ 2.21
LRCH4-210ENST00000498539 FGD5Q6ZNL6 1462 aa28.83■■■□□ 2.21
LRCH4-210ENST00000498539 SOGA1O94964 1423 aa28.78■■■□□ 2.2
LRCH4-210ENST00000498539 TDRD9Q8NDG6 1382 aaKnown RBP28.76■■■□□ 2.2
LRCH4-210ENST00000498539 SNAPC4Q5SXM2 1469 aa28.72■■■□□ 2.19
LRCH4-210ENST00000498539 WDR97A6NE52 1622 aa28.72■■■□□ 2.19
LRCH4-210ENST00000498539 FBLN2P98095 1184 aa28.71■■■□□ 2.19
LRCH4-210ENST00000498539 ARAP1Q96P48 1450 aa28.65■■■□□ 2.18
LRCH4-210ENST00000498539 PBRM1Q86U86 1689 aa28.61■■■□□ 2.17
LRCH4-210ENST00000498539 SUPT5HO00267 1087 aaKnown RBP28.6■■■□□ 2.17
LRCH4-210ENST00000498539 CLASP1Q7Z460 1538 aa28.59■■■□□ 2.17
LRCH4-210ENST00000498539 CYB5RLQ6IPT4 315 aa28.58■■■□□ 2.17
LRCH4-210ENST00000498539 GRIN2BQ13224 1484 aa28.57■■■□□ 2.16
LRCH4-210ENST00000498539 MAGI1Q96QZ7 1491 aaPredicted RBP28.57■■■□□ 2.16
LRCH4-210ENST00000498539 SYNJ1O43426 1573 aa28.51■■■□□ 2.15
LRCH4-210ENST00000498539 ABCA5Q8WWZ7 1642 aa28.51■■■□□ 2.15
LRCH4-210ENST00000498539 SYNJ2O15056 1496 aa28.48■■■□□ 2.15
LRCH4-210ENST00000498539 GAPVD1Q14C86 1478 aa28.47■■■□□ 2.15
LRCH4-210ENST00000498539 ABCA10Q8WWZ4 1543 aa28.46■■■□□ 2.15
LRCH4-210ENST00000498539 CHMP7Q8WUX9 453 aaPredicted RBP28.45■■■□□ 2.14
LRCH4-210ENST00000498539 BIVM-ERCC5R4GMW8 1640 aa28.38■■■□□ 2.13
LRCH4-210ENST00000498539 TOP2BQ02880 1626 aa28.33■■■□□ 2.13
LRCH4-210ENST00000498539 ADAMTS12P58397 1594 aa28.3■■■□□ 2.12
LRCH4-210ENST00000498539 WRNQ14191 1432 aaPredicted RBP eCLIP28.28■■■□□ 2.12
LRCH4-210ENST00000498539 TRHP20396 242 aaPredicted RBP28.25■■■□□ 2.11
LRCH4-210ENST00000498539 GRIN2AQ12879 1464 aa28.24■■■□□ 2.11
LRCH4-210ENST00000498539 CEP170Q5SW79 1584 aa28.2■■■□□ 2.11
LRCH4-210ENST00000498539 ERCC6L2Q5T890 1561 aa28.2■■■□□ 2.11
LRCH4-210ENST00000498539 NUP160Q12769 1436 aa28.13■■■□□ 2.09
LRCH4-210ENST00000498539 ERICH3Q5RHP9 1530 aa28.09■■■□□ 2.09
LRCH4-210ENST00000498539 FHAD1B1AJZ9 1412 aa28.09■■■□□ 2.09
LRCH4-210ENST00000498539 SHROOM2Q13796 1616 aa28.07■■■□□ 2.08
LRCH4-210ENST00000498539 RUSC2Q8N2Y8 1516 aa27.92■■■□□ 2.06
LRCH4-210ENST00000498539 PRG4Q92954 1404 aaPredicted RBP27.84■■■□□ 2.05
LRCH4-210ENST00000498539 KIF13AQ9H1H9 1805 aa27.74■■■□□ 2.03
LRCH4-210ENST00000498539 CUL7Q14999 1698 aa27.73■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms